Rh1DG164400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0017025
Physical Location & Seq
Forward (+)
33783466 .. 33800738
17273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG164400.1

Sequence Viewer

Length: 363 bp
ATGGTTATCCAGCTCTTGGCTAGGGGCCTAGGGTTTGAAGACTTACCTTCTGAGCGTAAGGCACAGGCTCCAAATGCCAATGACCAGGCTGAAGCTCAACATGAGGAGGTTCAACATGAGGCTGTGCAGCAGGAGGTTCAAAATGAAGAGGTGCCCACTGATAATGTGCAGCAGGAGGTTCAAGCTGAGGAAAGCATTCCAGCTCCTGGTTCTGTGCCTTTTATGCAGTCACAACAGTCCACCAATGTATTCTGGGCAACACAGTCCAGTCAAGCTCCAGGGAGTTCCTCATCCAGGCTTGGGTTCGCACATAAGAGGTTCAAATCCCTTGCACACAGAAAATCAAAATCTCAGAACACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.24

Weight (kDa)

5.29

Isoelectric Point (pI)

65.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 151
AccB7I CCANNNNNTGG 2 cut(s) 16, 206
AcuI CTGAAG 1 cut(s) 111
AfiI CCNNNNNNNGG 4 cut(s) 16, 206, 294, 300
AgsI TTSAA 5 cut(s) 38, 113, 140, 182, 322
AjnI CCWGG 4 cut(s) 84, 205, 277, 293
AluBI AGCT 5 cut(s) 13, 95, 185, 203, 275
AluI AGCT 5 cut(s) 13, 95, 185, 203, 275
AlwNI CAGNNNCTG 1 cut(s) 206
AoxI GGCC 1 cut(s) 25
ApeKI GCWGC 2 cut(s) 127, 169
Asp700I GAANNNNTTC 1 cut(s) 195
AspA2I CCTAGG 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 25
AvrII CCTAGG 1 cut(s) 28
BaeGI GKGCMC 1 cut(s) 156
BanI GGYRCC 1 cut(s) 151
BbsI GAAGAC 1 cut(s) 45
BbvCI CCTCAGC 1 cut(s) 186
BbvI GCAGC 2 cut(s) 139, 181
BciT130I CCWGG 4 cut(s) 86, 207, 279, 295
BfaI CTAG 2 cut(s) 21, 29
BisI GCNGC 2 cut(s) 128, 170
BlnI CCTAGG 1 cut(s) 28
BlsI GCNGC 2 cut(s) 129, 171
Bme1390I CCNGG 4 cut(s) 86, 207, 279, 295
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 3 cut(s) 26, 69, 153
BmrFI CCNGG 4 cut(s) 86, 207, 279, 295
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 261
Bpu10I CCTNAGC 1 cut(s) 186
BsaJI CCNNGG 2 cut(s) 28, 278
Bsc4I CCNNNNNNNGG 4 cut(s) 16, 206, 294, 300
Bse1I ACTGG 1 cut(s) 267
BseBI CCWGG 4 cut(s) 86, 207, 279, 295
BseDI CCNNGG 2 cut(s) 28, 278
BseGI GGATG 1 cut(s) 290
BseLI CCNNNNNNNGG 4 cut(s) 16, 206, 294, 300
BseMII CTCAG 2 cut(s) 42, 177
BseNI ACTGG 1 cut(s) 267
BseRI GAGGAG 1 cut(s) 119
BseSI GKGCMC 1 cut(s) 156
BseXI GCAGC 2 cut(s) 139, 181
BsgI GTGCAG 2 cut(s) 146, 188
BshFI GGCC 1 cut(s) 27
BshNI GGYRCC 1 cut(s) 151
BslI CCNNNNNNNGG 4 cut(s) 16, 206, 294, 300
BsmI GAATGC 1 cut(s) 195
BsnI GGCC 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 156
BspANI GGCC 1 cut(s) 27
BspCNI CTCAG 2 cut(s) 43, 178
BspLI GGNNCC 3 cut(s) 26, 69, 153
BspT107I GGYRCC 1 cut(s) 151
BsrI ACTGG 1 cut(s) 267
BssECI CCNNGG 2 cut(s) 28, 278
BssT1I CCWWGG 1 cut(s) 28
Bst2UI CCWGG 4 cut(s) 86, 207, 279, 295
Bst4CI ACNGT 2 cut(s) 237, 264
Bst6I CTCTTC 1 cut(s) 141
BstDEI CTNAG 3 cut(s) 51, 186, 351
BstENI CCTNNNNNAGG 1 cut(s) 292
BstF5I GGATG 1 cut(s) 290
BstMWI GCNNNNNNNGC 2 cut(s) 74, 223
BstNI CCWGG 4 cut(s) 86, 207, 279, 295
BstSCI CCNGG 4 cut(s) 84, 205, 277, 293
BstSLI GKGCMC 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 139, 181
BstV2I GAAGAC 1 cut(s) 45
BsuRI GGCC 1 cut(s) 27
BtsCI GGATG 1 cut(s) 290
BtsIMutI CAGTG 1 cut(s) 156
CaiI CAGNNNCTG 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 25
CviAII CATG 3 cut(s) 101, 116, 360
DdeI CTNAG 3 cut(s) 51, 186, 351
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 111
EcoNI CCTNNNNNAGG 1 cut(s) 292
EcoO109I RGGNCCY 1 cut(s) 25
EcoRII CCWGG 4 cut(s) 84, 205, 277, 293
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 3 cut(s) 104, 119, 363
FaiI YATR 5 cut(s) 102, 117, 224, 312, 361
FatI CATG 3 cut(s) 100, 115, 359
Fnu4HI GCNGC 2 cut(s) 128, 170
FokI GGATG 1 cut(s) 277
Fsp4HI GCNGC 2 cut(s) 128, 170
FspBI CTAG 2 cut(s) 21, 29
GluI GCNGC 2 cut(s) 128, 170
GsuI CTGGAG 1 cut(s) 261
HaeIII GGCC 1 cut(s) 27
Hin1II CATG 3 cut(s) 104, 119, 363
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 2 cut(s) 52, 354
Hpy8I GTNNAC 1 cut(s) 240
HpyAV CCTTC 1 cut(s) 57
HpyCH4III ACNGT 2 cut(s) 237, 264
HpyCH4V TGCA 4 cut(s) 127, 169, 226, 332
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 223
HpyF3I CTNAG 3 cut(s) 51, 186, 351
Hsp92II CATG 3 cut(s) 104, 119, 363
LmnI GCTCC 3 cut(s) 73, 208, 280
Lsp1109I GCAGC 2 cut(s) 139, 181
MaeI CTAG 2 cut(s) 21, 29
MaeIII GTNAC 1 cut(s) 228
MboII GAAGA 2 cut(s) 50, 158
MhlI GDGCHC 1 cut(s) 156
MnlI CCTC 9 cut(s) 97, 100, 112, 127, 142, 169, 181, 298, 309
MroXI GAANNNNTTC 1 cut(s) 195
MspR9I CCNGG 4 cut(s) 86, 207, 279, 295
Mva1269I GAATGC 1 cut(s) 195
MvaI CCWGG 4 cut(s) 86, 207, 279, 295
MwoI GCNNNNNNNGC 2 cut(s) 74, 223
NlaIII CATG 3 cut(s) 104, 119, 363
NlaIV GGNNCC 3 cut(s) 26, 69, 153
NmuCI GTSAC 1 cut(s) 228
PctI GAATGC 1 cut(s) 195
PdmI GAANNNNTTC 1 cut(s) 195
PflMI CCANNNNNTGG 2 cut(s) 16, 206
PkrI GCNGC 2 cut(s) 129, 171
Psp6I CCWGG 4 cut(s) 84, 205, 277, 293
PspGI CCWGG 4 cut(s) 84, 205, 277, 293
PspN4I GGNNCC 3 cut(s) 26, 69, 153
PspPI GGNCC 1 cut(s) 25
PstNI CAGNNNCTG 1 cut(s) 206
SatI GCNGC 2 cut(s) 128, 170
Sau96I GGNCC 1 cut(s) 25
ScrFI CCNGG 4 cut(s) 86, 207, 279, 295
SduI GDGCHC 1 cut(s) 156
SspMI CTAG 2 cut(s) 21, 29
StyD4I CCNGG 4 cut(s) 84, 205, 277, 293
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 2 cut(s) 237, 264
TscAI CASTG 1 cut(s) 163
TseFI GTSAC 1 cut(s) 228
TseI GCWGC 2 cut(s) 127, 169
Tsp45I GTSAC 1 cut(s) 228
TspDTI ATGAA 1 cut(s) 159
TspRI CASTG 1 cut(s) 163
Van91I CCANNNNNTGG 2 cut(s) 16, 206
XagI CCTNNNNNAGG 1 cut(s) 292
XmaJI CCTAGG 1 cut(s) 28
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 2 cut(s) 21, 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.