Rh1DG101500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0017025
Physical Location & Seq
Forward (+)
18948111 .. 18950330
2220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG101500.1

Sequence Viewer

Length: 303 bp
ATGGACCACGCTCCCAAACCAACATCCTCTCCCAGTCCGGACACAGTGGCGATCGACCTGGAGAGATCACACAAAGCTACCTGGTTTGAATATGGGGATGGGCATTTTCCTTTTGGAGAAGAGTTTGGATCAACTGATGATGAAGAAGAGCATGACGGTTTAGGGTCAGATAGGGAGGTTAATGTTGATGGTGATGCAGAAAGGGAAGTTGGGACTGAAGTGCCTAGACATGGGCCAGATAGTGGTTTAGGGCCAACTGGGCCAGATAGGGAAGTTAGGACTGATGGCCTGGACATGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.81

Weight (kDa)

4.24

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 242
AccIII TCCGGA 1 cut(s) 37
AclWI GGATC 1 cut(s) 136
AcuI CTGAAG 1 cut(s) 237
AfiI CCNNNNNNNGG 3 cut(s) 230, 242, 295
AgsI TTSAA 1 cut(s) 89
AjnI CCWGG 3 cut(s) 57, 80, 288
AjuI GAANNNNNNNTTGG 2 cut(s) 192, 224
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
AlwI GGATC 1 cut(s) 136
Aor13HI TCCGGA 1 cut(s) 37
AoxI GGCC 4 cut(s) 233, 251, 260, 286
AspS9I GGNCC 4 cut(s) 4, 233, 251, 260
AsuHPI GGTGA 1 cut(s) 203
AvaII GGWCC 1 cut(s) 4
BccI CCATC 3 cut(s) 92, 182, 278
BciT130I CCWGG 3 cut(s) 59, 82, 290
BfaI CTAG 2 cut(s) 225, 301
BglI GCCNNNNNGGC 1 cut(s) 259
Bme1390I CCNGG 3 cut(s) 59, 82, 290
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 4 cut(s) 4, 233, 251, 260
BmrFI CCNGG 3 cut(s) 59, 82, 290
BmrI ACTGGG 2 cut(s) 27, 267
BmsI GCATC 1 cut(s) 184
BmuI ACTGGG 2 cut(s) 27, 267
BpmI CTGGAG 1 cut(s) 80
BsaWI WCCGGW 1 cut(s) 37
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 3 cut(s) 230, 242, 295
Bse1I ACTGG 2 cut(s) 33, 262
BseAI TCCGGA 1 cut(s) 37
BseBI CCWGG 3 cut(s) 59, 82, 290
BseGI GGATG 2 cut(s) 23, 103
BseLI CCNNNNNNNGG 3 cut(s) 230, 242, 295
BseNI ACTGG 2 cut(s) 33, 262
Bsh1285I CGRYCG 1 cut(s) 54
BshFI GGCC 4 cut(s) 235, 253, 262, 288
BsiEI CGRYCG 1 cut(s) 54
BsiSI CCGG 1 cut(s) 38
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 3 cut(s) 230, 242, 295
BsmFI GGGAC 1 cut(s) 226
BsnI GGCC 4 cut(s) 235, 253, 262, 288
Bsp13I TCCGGA 1 cut(s) 37
Bsp143I GATC 3 cut(s) 51, 65, 128
BspANI GGCC 4 cut(s) 235, 253, 262, 288
BspEI TCCGGA 1 cut(s) 37
BspPI GGATC 1 cut(s) 136
BspQI GCTCTTC 1 cut(s) 141
BsrI ACTGG 2 cut(s) 33, 262
BssMI GATC 3 cut(s) 51, 65, 128
Bst2UI CCWGG 3 cut(s) 59, 82, 290
Bst4CI ACNGT 2 cut(s) 46, 158
Bst6I CTCTTC 2 cut(s) 114, 141
BstF5I GGATG 2 cut(s) 23, 103
BstKTI GATC 3 cut(s) 54, 68, 131
BstMBI GATC 3 cut(s) 51, 65, 128
BstMCI CGRYCG 1 cut(s) 54
BstMWI GCNNNNNNNGC 1 cut(s) 259
BstNI CCWGG 3 cut(s) 59, 82, 290
BstSCI CCNGG 3 cut(s) 57, 80, 288
BsuRI GGCC 4 cut(s) 235, 253, 262, 288
BtsCI GGATG 2 cut(s) 23, 103
BtsIMutI CAGTG 1 cut(s) 51
Cfr13I GGNCC 4 cut(s) 4, 233, 251, 260
CsiI ACCWGGT 1 cut(s) 80
CviAII CATG 3 cut(s) 152, 230, 295
CviJI RGCY 6 cut(s) 77, 235, 253, 262, 288, 300
CviKI_1 RGCY 6 cut(s) 77, 235, 253, 262, 288, 300
DpnI GATC 3 cut(s) 53, 67, 130
DpnII GATC 3 cut(s) 51, 65, 128
Eam1104I CTCTTC 2 cut(s) 114, 141
EarI CTCTTC 2 cut(s) 114, 141
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 237
EcoRII CCWGG 3 cut(s) 57, 80, 288
FaeI CATG 3 cut(s) 155, 233, 298
FaiI YATR 4 cut(s) 93, 153, 231, 296
FaqI GGGAC 1 cut(s) 226
FatI CATG 3 cut(s) 151, 229, 294
FokI GGATG 2 cut(s) 10, 110
FspBI CTAG 2 cut(s) 225, 301
GsuI CTGGAG 1 cut(s) 80
HaeIII GGCC 4 cut(s) 235, 253, 262, 288
HapII CCGG 1 cut(s) 38
Hin1II CATG 3 cut(s) 155, 233, 298
HpaII CCGG 1 cut(s) 38
HphI GGTGA 1 cut(s) 203
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 1 cut(s) 38
HpyCH4III ACNGT 2 cut(s) 46, 158
HpyCH4V TGCA 1 cut(s) 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 259
Hsp92II CATG 3 cut(s) 155, 233, 298
Kpn2I TCCGGA 1 cut(s) 37
Kzo9I GATC 3 cut(s) 51, 65, 128
LguI GCTCTTC 1 cut(s) 141
LmnI GCTCC 1 cut(s) 16
LweI GCATC 1 cut(s) 184
MabI ACCWGGT 1 cut(s) 80
MaeI CTAG 2 cut(s) 225, 301
MalI GATC 3 cut(s) 53, 67, 130
MboI GATC 3 cut(s) 51, 65, 128
MboII GAAGA 3 cut(s) 131, 155, 158
MnlI CCTC 2 cut(s) 37, 169
MroI TCCGGA 1 cut(s) 37
MseI TTAA 1 cut(s) 180
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 3 cut(s) 59, 82, 290
MvaI CCWGG 3 cut(s) 59, 82, 290
MwoI GCNNNNNNNGC 1 cut(s) 259
NdeII GATC 3 cut(s) 51, 65, 128
NlaIII CATG 3 cut(s) 155, 233, 298
PciSI GCTCTTC 1 cut(s) 141
PflMI CCANNNNNTGG 1 cut(s) 242
Ple19I CGATCG 1 cut(s) 54
Psp6I CCWGG 3 cut(s) 57, 80, 288
PspGI CCWGG 3 cut(s) 57, 80, 288
PspPI GGNCC 4 cut(s) 4, 233, 251, 260
PvuI CGATCG 1 cut(s) 54
SapI GCTCTTC 1 cut(s) 141
SaqAI TTAA 1 cut(s) 180
Sau3AI GATC 3 cut(s) 51, 65, 128
Sau96I GGNCC 4 cut(s) 4, 233, 251, 260
ScrFI CCNGG 3 cut(s) 59, 82, 290
SetI ASST 4 cut(s) 60, 79, 83, 180
SexAI ACCWGGT 1 cut(s) 80
SfaNI GCATC 1 cut(s) 184
SfiI GGCCNNNNNGGCC 1 cut(s) 259
SinI GGWCC 1 cut(s) 4
SspMI CTAG 2 cut(s) 225, 301
StyD4I CCNGG 3 cut(s) 57, 80, 288
TaaI ACNGT 2 cut(s) 46, 158
TaqI TCGA 1 cut(s) 54
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 51
TspDTI ATGAA 1 cut(s) 156
TspRI CASTG 1 cut(s) 51
Van91I CCANNNNNTGG 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 4
XspI CTAG 2 cut(s) 225, 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.