Rw0G022730

receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01055
OG0017025
Physical Location & Seq
Reverse (-)
108142 .. 111435
3294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G022730.1

Sequence Viewer

Length: 816 bp
ATGTGCAAATTTGTACCTCAGACAACCAAGATTTTAGAAATGTACATTGTGTGCTTAGCAGAAAGGAAGCTGTTTATTGAAGAGGAATTAAAGGTGTTTCAAGAGGATCTGGAACATATTAGTTTCATTGGCCATGTAATTGAAGATATAGAAGATGGCCCAAATATTATGGGAGCTGAAGAAAATGATAATGGTGTTGGGCCAACTGGCGGTGAAGCTAGACCAACTGTGCCAACTTATGGTGTTGAGCTGAGGGAAGCCAATTCAAGACAGAGGGCCCATGGACCAAATGCAATAGTGACTCTCAAGAGCAAGAAGAGGGCCATGGATAAAGGGAAAAGGCCTGTAGTTGAAGAAGCAGTGAACAAGACTAAGAAAATGAGTTCCAGGGCCAATAAAAGATGTGTGCAAAGAGGTGAAGTGGAACCACCTACTGGATTAACCAAGCTGCCCAGAGTCTATTACACTCAAGTTAAATGTGGCATCTGTAAGAAGAAAGGCCACAATAGGAGGACATGTCAAAGCAGAAATCAAGCTCCAAATGACAATGACCAAGCTGAAGCTCAACATGAGGCTGTGCAGCAGGAGGTTCAAAATGAAGAGGTGCCCACTGATAATGTGCAGCAGGAGGTTCAAGCTGAGGAAAGCATTCCAGCCCCTGGTTCTGTGCCTTTTATGCAGTCACAACAGTCCACCAATGTATTCTGGGCAACACAGTCCAGTCAAGCTCAAGAGAGCTCCTCATCCAGGCTTGGGTTCGCACATAAGAGGTTCAAATCCCTTGCACACAGAAAATCAAAATCTCAGAACACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8

Protein Analysis

271

Amino Acids

30.37

Weight (kDa)

8.66

Isoelectric Point (pI)

63.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 604
AccB7I CCANNNNNTGG 3 cut(s) 239, 434, 659
AciI CCGC 1 cut(s) 210
AclWI GGATC 1 cut(s) 114
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 1 cut(s) 8
AcuI CTGAAG 2 cut(s) 198, 579
AfaI GTAC 2 cut(s) 15, 44
AfiI CCNNNNNNNGG 6 cut(s) 209, 239, 434, 659, 747, 753
AflIII ACRYGT 1 cut(s) 515
AgsI TTSAA 8 cut(s) 80, 101, 143, 267, 353, 593, 635, 775
AjnI CCWGG 3 cut(s) 386, 658, 746
Alw21I GWGCWC 1 cut(s) 740
AlwI GGATC 1 cut(s) 114
AlwNI CAGNNNCTG 1 cut(s) 659
AoxI GGCC 8 cut(s) 130, 157, 200, 276, 321, 341, 390, 499
ApaI GGGCCC 1 cut(s) 280
ApeKI GCWGC 3 cut(s) 448, 580, 622
ApoI RAATTY 1 cut(s) 8
Asp700I GAANNNNTTC 1 cut(s) 648
AspS9I GGNCC 7 cut(s) 158, 200, 276, 277, 284, 321, 390
AsuHPI GGTGA 2 cut(s) 224, 428
AvaII GGWCC 1 cut(s) 284
BaeGI GKGCMC 2 cut(s) 280, 609
BalI TGGCCA 1 cut(s) 132
BanI GGYRCC 1 cut(s) 604
BanII GRGCYC 2 cut(s) 280, 740
Bbv12I GWGCWC 1 cut(s) 740
BbvCI CCTCAGC 2 cut(s) 251, 639
BbvI GCAGC 3 cut(s) 435, 592, 634
BccI CCATC 1 cut(s) 149
BciT130I CCWGG 3 cut(s) 388, 660, 748
BfaI CTAG 1 cut(s) 219
BfmI CTRYAG 1 cut(s) 345
BisI GCNGC 3 cut(s) 449, 581, 623
BlpI GCTNAGC 1 cut(s) 55
BlsI GCNGC 3 cut(s) 450, 582, 624
Bme1390I CCNGG 3 cut(s) 388, 660, 748
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 7 cut(s) 158, 200, 276, 277, 284, 321, 390
BmiI GGNNCC 3 cut(s) 278, 426, 606
BmrFI CCNGG 3 cut(s) 388, 660, 748
BmsI GCATC 1 cut(s) 492
BplI GAGNNNNNCTC 2 cut(s) 725, 757
Bpu10I CCTNAGC 2 cut(s) 251, 639
Bpu1102I GCTNAGC 1 cut(s) 55
BpuEI CTTGAG 3 cut(s) 290, 453, 714
BsaJI CCNNGG 4 cut(s) 280, 324, 387, 658
BsaXI ACNNNNNCTCC 2 cut(s) 502, 532
Bsc4I CCNNNNNNNGG 6 cut(s) 209, 239, 434, 659, 747, 753
Bse1I ACTGG 3 cut(s) 211, 439, 720
BseBI CCWGG 3 cut(s) 388, 660, 748
BseDI CCNNGG 4 cut(s) 280, 324, 387, 658
BseGI GGATG 1 cut(s) 743
BseLI CCNNNNNNNGG 6 cut(s) 209, 239, 434, 659, 747, 753
BseMII CTCAG 3 cut(s) 32, 242, 630
BseNI ACTGG 3 cut(s) 211, 439, 720
BseRI GAGGAG 1 cut(s) 730
BseSI GKGCMC 2 cut(s) 280, 609
BseXI GCAGC 3 cut(s) 435, 592, 634
BsgI GTGCAG 2 cut(s) 599, 641
BshFI GGCC 8 cut(s) 132, 159, 202, 278, 323, 343, 392, 501
BshNI GGYRCC 1 cut(s) 604
BsiHKAI GWGCWC 1 cut(s) 740
BslI CCNNNNNNNGG 6 cut(s) 209, 239, 434, 659, 747, 753
BsmI GAATGC 1 cut(s) 648
BsnI GGCC 8 cut(s) 132, 159, 202, 278, 323, 343, 392, 501
Bsp120I GGGCCC 1 cut(s) 276
Bsp1286I GDGCHC 3 cut(s) 280, 609, 740
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 1 cut(s) 106
Bsp1720I GCTNAGC 1 cut(s) 55
Bsp19I CCATGG 2 cut(s) 280, 324
BspACI CCGC 1 cut(s) 210
BspANI GGCC 8 cut(s) 132, 159, 202, 278, 323, 343, 392, 501
BspCNI CTCAG 3 cut(s) 31, 243, 631
BspLI GGNNCC 3 cut(s) 278, 426, 606
BspPI GGATC 1 cut(s) 114
BspT107I GGYRCC 1 cut(s) 604
BsrGI TGTACA 1 cut(s) 42
BsrI ACTGG 3 cut(s) 211, 439, 720
BssECI CCNNGG 4 cut(s) 280, 324, 387, 658
BssMI GATC 1 cut(s) 106
BssT1I CCWWGG 2 cut(s) 280, 324
Bst2UI CCWGG 3 cut(s) 388, 660, 748
Bst4CI ACNGT 3 cut(s) 229, 690, 717
Bst6I CTCTTC 3 cut(s) 75, 311, 594
BstAUI TGTACA 1 cut(s) 42
BstDEI CTNAG 6 cut(s) 18, 55, 251, 372, 639, 804
BstDSI CCRYGG 2 cut(s) 280, 324
BstENI CCTNNNNNAGG 1 cut(s) 745
BstF5I GGATG 1 cut(s) 743
BstKTI GATC 1 cut(s) 109
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 676
BstNI CCWGG 3 cut(s) 388, 660, 748
BstNSI RCATGY 1 cut(s) 519
BstSCI CCNGG 3 cut(s) 386, 658, 746
BstSFI CTRYAG 1 cut(s) 345
BstSLI GKGCMC 2 cut(s) 280, 609
BstV1I GCAGC 3 cut(s) 435, 592, 634
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BsuRI GGCC 8 cut(s) 132, 159, 202, 278, 323, 343, 392, 501
BtgI CCRYGG 2 cut(s) 280, 324
BtsCI GGATG 1 cut(s) 743
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 2 cut(s) 366, 609
CaiI CAGNNNCTG 1 cut(s) 659
Cfr13I GGNCC 7 cut(s) 158, 200, 276, 277, 284, 321, 390
Csp6I GTAC 2 cut(s) 14, 43
CviAII CATG 6 cut(s) 134, 281, 325, 516, 569, 813
CviQI GTAC 2 cut(s) 14, 43
DdeI CTNAG 6 cut(s) 18, 55, 251, 372, 639, 804
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 3 cut(s) 75, 311, 594
EarI CTCTTC 3 cut(s) 75, 311, 594
Ecl136II GAGCTC 1 cut(s) 738
Eco130I CCWWGG 2 cut(s) 280, 324
Eco147I AGGCCT 1 cut(s) 343
Eco24I GRGCYC 2 cut(s) 280, 740
Eco47I GGWCC 1 cut(s) 284
Eco53kI GAGCTC 1 cut(s) 738
Eco57I CTGAAG 2 cut(s) 198, 579
EcoICRI GAGCTC 1 cut(s) 738
EcoNI CCTNNNNNAGG 1 cut(s) 745
EcoO109I RGGNCCY 1 cut(s) 276
EcoRII CCWGG 3 cut(s) 386, 658, 746
EcoT14I CCWWGG 2 cut(s) 280, 324
EcoT38I GRGCYC 2 cut(s) 280, 740
ErhI CCWWGG 2 cut(s) 280, 324
FaeI CATG 6 cut(s) 137, 284, 328, 519, 572, 816
FatI CATG 6 cut(s) 133, 280, 324, 515, 568, 812
Fnu4HI GCNGC 3 cut(s) 449, 581, 623
FokI GGATG 1 cut(s) 730
FriOI GRGCYC 2 cut(s) 280, 740
Fsp4HI GCNGC 3 cut(s) 449, 581, 623
FspBI CTAG 1 cut(s) 219
GluI GCNGC 3 cut(s) 449, 581, 623
HaeIII GGCC 8 cut(s) 132, 159, 202, 278, 323, 343, 392, 501
Hin1II CATG 6 cut(s) 137, 284, 328, 519, 572, 816
HinfI GANTC 2 cut(s) 301, 456
HphI GGTGA 2 cut(s) 224, 428
Hpy166II GTNNAC 2 cut(s) 364, 693
Hpy188I TCNGA 2 cut(s) 21, 807
Hpy188III TCNNGA 5 cut(s) 101, 110, 267, 307, 731
Hpy8I GTNNAC 2 cut(s) 364, 693
HpyCH4III ACNGT 3 cut(s) 229, 690, 717
HpyCH4V TGCA 7 cut(s) 6, 293, 409, 580, 622, 679, 785
HpyF10VI GCNNNNNNNGC 1 cut(s) 676
HpyF3I CTNAG 6 cut(s) 18, 55, 251, 372, 639, 804
Hsp92II CATG 6 cut(s) 137, 284, 328, 519, 572, 816
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 3 cut(s) 173, 541, 743
Lsp1109I GCAGC 3 cut(s) 435, 592, 634
LweI GCATC 1 cut(s) 492
MaeI CTAG 1 cut(s) 219
MaeIII GTNAC 2 cut(s) 298, 681
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 8 cut(s) 92, 155, 164, 191, 328, 365, 505, 611
MflI RGATCY 1 cut(s) 106
MhlI GDGCHC 3 cut(s) 280, 609, 740
MlsI TGGCCA 1 cut(s) 132
MluCI AATT 4 cut(s) 8, 86, 138, 262
MluNI TGGCCA 1 cut(s) 132
MlyI GAGTC 2 cut(s) 295, 465
Mox20I TGGCCA 1 cut(s) 132
MroXI GAANNNNTTC 1 cut(s) 648
MscI TGGCCA 1 cut(s) 132
MseI TTAA 3 cut(s) 89, 440, 474
Msp20I TGGCCA 1 cut(s) 132
MspR9I CCNGG 3 cut(s) 388, 660, 748
Mva1269I GAATGC 1 cut(s) 648
MvaI CCWGG 3 cut(s) 388, 660, 748
MwoI GCNNNNNNNGC 1 cut(s) 676
NcoI CCATGG 2 cut(s) 280, 324
NdeII GATC 1 cut(s) 106
NlaIII CATG 6 cut(s) 137, 284, 328, 519, 572, 816
NlaIV GGNNCC 3 cut(s) 278, 426, 606
NmuCI GTSAC 2 cut(s) 298, 681
NspI RCATGY 1 cut(s) 519
PceI AGGCCT 1 cut(s) 343
PciI ACATGT 1 cut(s) 515
PctI GAATGC 1 cut(s) 648
PdmI GAANNNNTTC 1 cut(s) 648
PflMI CCANNNNNTGG 3 cut(s) 239, 434, 659
PkrI GCNGC 3 cut(s) 450, 582, 624
PleI GAGTC 2 cut(s) 295, 464
PpsI GAGTC 2 cut(s) 295, 464
PscI ACATGT 1 cut(s) 515
Psp124BI GAGCTC 1 cut(s) 740
Psp6I CCWGG 3 cut(s) 386, 658, 746
PspGI CCWGG 3 cut(s) 386, 658, 746
PspN4I GGNNCC 3 cut(s) 278, 426, 606
PspOMI GGGCCC 1 cut(s) 276
PspPI GGNCC 7 cut(s) 158, 200, 276, 277, 284, 321, 390
PstNI CAGNNNCTG 1 cut(s) 659
PsuI RGATCY 1 cut(s) 106
RsaI GTAC 2 cut(s) 15, 44
RsaNI GTAC 2 cut(s) 14, 43
SacI GAGCTC 1 cut(s) 740
SaqAI TTAA 3 cut(s) 89, 440, 474
SatI GCNGC 3 cut(s) 449, 581, 623
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 7 cut(s) 158, 200, 276, 277, 284, 321, 390
SchI GAGTC 2 cut(s) 295, 465
ScrFI CCNGG 3 cut(s) 388, 660, 748
SduI GDGCHC 3 cut(s) 280, 609, 740
SfaNI GCATC 1 cut(s) 492
SfcI CTRYAG 1 cut(s) 345
SinI GGWCC 1 cut(s) 284
SmlI CTYRAG 3 cut(s) 305, 468, 729
SmoI CTYRAG 3 cut(s) 305, 468, 729
Sse9I AATT 4 cut(s) 8, 86, 138, 262
SseBI AGGCCT 1 cut(s) 343
SsiI CCGC 1 cut(s) 210
SspI AATATT 1 cut(s) 166
SspMI CTAG 1 cut(s) 219
SstI GAGCTC 1 cut(s) 740
StuI AGGCCT 1 cut(s) 343
StyD4I CCNGG 3 cut(s) 386, 658, 746
StyI CCWWGG 2 cut(s) 280, 324
TaaI ACNGT 3 cut(s) 229, 690, 717
TasI AATT 4 cut(s) 8, 86, 138, 262
TatI WGTACW 1 cut(s) 42
Tru1I TTAA 3 cut(s) 89, 440, 474
Tru9I TTAA 3 cut(s) 89, 440, 474
TscAI CASTG 2 cut(s) 366, 616
TseFI GTSAC 2 cut(s) 298, 681
TseI GCWGC 3 cut(s) 448, 580, 622
Tsp45I GTSAC 2 cut(s) 298, 681
TspDTI ATGAA 2 cut(s) 115, 612
TspRI CASTG 2 cut(s) 366, 616
Van91I CCANNNNNTGG 3 cut(s) 239, 434, 659
VpaK11BI GGWCC 1 cut(s) 284
XagI CCTNNNNNAGG 1 cut(s) 745
XapI RAATTY 1 cut(s) 8
XceI RCATGY 1 cut(s) 519
XmnI GAANNNNTTC 1 cut(s) 648
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.