Rh2DG302400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0017025
Physical Location & Seq
Reverse (-)
36089470 .. 36097558
8089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG302400.1

Sequence Viewer

Length: 471 bp
ATGGTGTCGAGATTTGCAGTTTCTGATTCTTTGATTTCTTCGATTTATGATTCTTTGGTGCTGTTTGAATTTGGGTTTCTGGATGCAGGTAGATTTCCAAGGACTGTCTTCTTGATGCTCTCTTTGGTTGCTCAGATGGGCTACATGCACTTTGGCACAGTCAAGATATATGGTTCTGAGGCTGCCCTTATAAACACTTTAACAGAGACGTTTGGAATTCTCAACAGTATATGTTATGGGTTGGCATCAAGTTTGGCTCCAAATGCTAATGACCAGCCTGAAGATCAACATGAGGAGGTTGAACATGAGGCTGTGCAGCAGGAGGTTCAAAATGAAGAGGTGCCAACTGATAATGTGCAGCAAGAGGTTCAAGCTGAGGAAAGCATTCCATCCCCTGATTTTGTGCCTTTTATGCAGTCACAACAGTCCACCAATGTATTCTGGGCAACACAGTTGGCCATTATAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.38

Weight (kDa)

4.05

Isoelectric Point (pI)

53.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 191, 464
Acc36I ACCTGC 1 cut(s) 77
AccB1I GGYRCC 1 cut(s) 340
AcoI YGGCCR 1 cut(s) 456
AcsI RAATTY 2 cut(s) 68, 216
AcuI CTGAAG 1 cut(s) 300
AgsI TTSAA 4 cut(s) 68, 302, 329, 371
AluBI AGCT 1 cut(s) 374
AluI AGCT 1 cut(s) 374
Alw26I GTCTC 1 cut(s) 200
AlwNI CAGNNNCTG 1 cut(s) 23
AoxI GGCC 1 cut(s) 456
ApeKI GCWGC 3 cut(s) 182, 316, 358
ApoI RAATTY 2 cut(s) 68, 216
Asp700I GAANNNNTTC 1 cut(s) 384
BalI TGGCCA 1 cut(s) 458
BanI GGYRCC 1 cut(s) 340
BbsI GAAGAC 1 cut(s) 100
BbvCI CCTCAGC 1 cut(s) 375
BbvI GCAGC 3 cut(s) 169, 328, 370
BccI CCATC 2 cut(s) 130, 397
BcoDI GTCTC 1 cut(s) 200
BfuAI ACCTGC 1 cut(s) 77
BisI GCNGC 3 cut(s) 183, 317, 359
BlsI GCNGC 3 cut(s) 184, 318, 360
BmiI GGNNCC 2 cut(s) 258, 342
BmsI GCATC 3 cut(s) 73, 105, 254
BpiI GAAGAC 1 cut(s) 100
Bpu10I CCTNAGC 1 cut(s) 375
BsaJI CCNNGG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 98
BseGI GGATG 2 cut(s) 88, 389
BseMII CTCAG 3 cut(s) 146, 168, 366
BseRI GAGGAG 1 cut(s) 308
BseXI GCAGC 3 cut(s) 169, 328, 370
BsgI GTGCAG 2 cut(s) 335, 377
BshFI GGCC 1 cut(s) 458
BshNI GGYRCC 1 cut(s) 340
BsmAI GTCTC 1 cut(s) 200
BsmBI CGTCTC 1 cut(s) 200
BsmI GAATGC 1 cut(s) 384
BsnI GGCC 1 cut(s) 458
Bsp143I GATC 1 cut(s) 283
BspANI GGCC 1 cut(s) 458
BspCNI CTCAG 3 cut(s) 145, 169, 367
BspLI GGNNCC 2 cut(s) 258, 342
BspMI ACCTGC 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 340
BssECI CCNNGG 1 cut(s) 98
BssMI GATC 1 cut(s) 283
BssT1I CCWWGG 1 cut(s) 98
Bst4CI ACNGT 5 cut(s) 106, 160, 227, 426, 453
Bst6I CTCTTC 1 cut(s) 330
BstDEI CTNAG 3 cut(s) 132, 177, 375
BstF5I GGATG 2 cut(s) 88, 389
BstKTI GATC 1 cut(s) 286
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 1 cut(s) 283
BstMWI GCNNNNNNNGC 2 cut(s) 263, 412
BstNSI RCATGY 1 cut(s) 148
BstV1I GCAGC 3 cut(s) 169, 328, 370
BstV2I GAAGAC 1 cut(s) 100
BsuRI GGCC 1 cut(s) 458
BtsCI GGATG 2 cut(s) 88, 389
BveI ACCTGC 1 cut(s) 77
CaiI CAGNNNCTG 1 cut(s) 23
CviAII CATG 3 cut(s) 145, 290, 305
CviJI RGCY 7 cut(s) 141, 182, 257, 277, 311, 374, 458
CviKI_1 RGCY 7 cut(s) 141, 182, 257, 277, 311, 374, 458
DdeI CTNAG 3 cut(s) 132, 177, 375
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
EaeI YGGCCR 1 cut(s) 456
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Eco130I CCWWGG 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 300
EcoRI GAATTC 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 98
ErhI CCWWGG 1 cut(s) 98
Esp3I CGTCTC 1 cut(s) 200
FaeI CATG 3 cut(s) 148, 293, 308
FatI CATG 3 cut(s) 144, 289, 304
Fnu4HI GCNGC 3 cut(s) 183, 317, 359
FokI GGATG 2 cut(s) 95, 376
Fsp4HI GCNGC 3 cut(s) 183, 317, 359
GluI GCNGC 3 cut(s) 183, 317, 359
HaeIII GGCC 1 cut(s) 458
Hin1II CATG 3 cut(s) 148, 293, 308
HinfI GANTC 2 cut(s) 26, 50
Hpy166II GTNNAC 1 cut(s) 429
Hpy188I TCNGA 3 cut(s) 25, 135, 178
Hpy188III TCNNGA 4 cut(s) 9, 80, 112, 163
Hpy8I GTNNAC 1 cut(s) 429
HpyCH4III ACNGT 5 cut(s) 106, 160, 227, 426, 453
HpyCH4IV ACGT 1 cut(s) 209
HpyCH4V TGCA 6 cut(s) 17, 86, 148, 316, 358, 415
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 412
HpyF3I CTNAG 3 cut(s) 132, 177, 375
HpySE526I ACGT 1 cut(s) 209
Hsp92II CATG 3 cut(s) 148, 293, 308
Kzo9I GATC 1 cut(s) 283
LmnI GCTCC 1 cut(s) 262
LpnPI CCDG 7 cut(s) 65, 72, 287, 291, 305, 408, 427
Lsp1109I GCAGC 3 cut(s) 169, 328, 370
LweI GCATC 3 cut(s) 73, 105, 254
MaeII ACGT 1 cut(s) 209
MaeIII GTNAC 1 cut(s) 417
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MboII GAAGA 4 cut(s) 30, 100, 293, 347
MlsI TGGCCA 1 cut(s) 458
MluCI AATT 2 cut(s) 68, 216
MluNI TGGCCA 1 cut(s) 458
MnlI CCTC 8 cut(s) 172, 286, 289, 301, 316, 331, 358, 370
Mox20I TGGCCA 1 cut(s) 458
MroXI GAANNNNTTC 1 cut(s) 384
MscI TGGCCA 1 cut(s) 458
MseI TTAA 1 cut(s) 200
MslI CAYNNNNRTG 1 cut(s) 464
Msp20I TGGCCA 1 cut(s) 458
Mva1269I GAATGC 1 cut(s) 384
MwoI GCNNNNNNNGC 2 cut(s) 263, 412
NdeII GATC 1 cut(s) 283
NlaIII CATG 3 cut(s) 148, 293, 308
NlaIV GGNNCC 2 cut(s) 258, 342
NmuCI GTSAC 1 cut(s) 417
NspI RCATGY 1 cut(s) 148
PctI GAATGC 1 cut(s) 384
PdmI GAANNNNTTC 1 cut(s) 384
PfeI GAWTC 2 cut(s) 26, 50
PkrI GCNGC 3 cut(s) 184, 318, 360
PsiI TTATAA 2 cut(s) 191, 464
PspN4I GGNNCC 2 cut(s) 258, 342
PstNI CAGNNNCTG 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 464
SaqAI TTAA 1 cut(s) 200
SatI GCNGC 3 cut(s) 183, 317, 359
Sau3AI GATC 1 cut(s) 283
SetI ASST 7 cut(s) 91, 212, 300, 327, 342, 369, 376
SfaNI GCATC 3 cut(s) 73, 105, 254
SmiMI CAYNNNNRTG 1 cut(s) 464
Sse9I AATT 2 cut(s) 68, 216
StyI CCWWGG 1 cut(s) 98
TaaI ACNGT 5 cut(s) 106, 160, 227, 426, 453
TaiI ACGT 1 cut(s) 212
TaqI TCGA 2 cut(s) 8, 41
TasI AATT 2 cut(s) 68, 216
TfiI GAWTC 2 cut(s) 26, 50
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TseFI GTSAC 1 cut(s) 417
TseI GCWGC 3 cut(s) 182, 316, 358
Tsp45I GTSAC 1 cut(s) 417
TspDTI ATGAA 1 cut(s) 348
XapI RAATTY 2 cut(s) 68, 216
XceI RCATGY 1 cut(s) 148
XmnI GAANNNNTTC 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.