No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000013391 |
| rosa_roxburghii | Rroxscaffold_2G00135960 |
| rosa_samantha | Rh1DG101500 Rh1DG101600 Rh1DG164400 Rh2AG635500 Rh2DG302400 Rh3CG100000 Rh4DG139300 Rh5AG332000 Rh6AG211300 Rh6BG107400 |
| rosa_wichuraiana | Rw0G022730 Rw6G009690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 151, 193 |
| AcsI | RAATTY | 1 cut(s) | 332 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 49 |
| AflIII | ACRYGT | 1 cut(s) | 303 |
| AgsI | TTSAA | 5 cut(s) | 71, 98, 140, 182, 224 |
| AluBI | AGCT | 3 cut(s) | 46, 185, 227 |
| AluI | AGCT | 3 cut(s) | 46, 185, 227 |
| Ama87I | CYCGRG | 1 cut(s) | 47 |
| AoxI | GGCC | 2 cut(s) | 12, 243 |
| ApeKI | GCWGC | 3 cut(s) | 127, 169, 211 |
| ApoI | RAATTY | 1 cut(s) | 332 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 237 |
| AspS9I | GGNCC | 1 cut(s) | 244 |
| AvaI | CYCGRG | 1 cut(s) | 47 |
| BanI | GGYRCC | 2 cut(s) | 151, 193 |
| BbvCI | CCTCAGC | 1 cut(s) | 228 |
| BbvI | GCAGC | 3 cut(s) | 139, 181, 223 |
| BisI | GCNGC | 3 cut(s) | 128, 170, 212 |
| BlsI | GCNGC | 3 cut(s) | 129, 171, 213 |
| BmeT110I | CYCGRG | 1 cut(s) | 47 |
| BmgT120I | GGNCC | 1 cut(s) | 244 |
| BmiI | GGNNCC | 5 cut(s) | 27, 111, 153, 195, 246 |
| BmrI | ACTGGG | 1 cut(s) | 303 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BmuI | ACTGGG | 1 cut(s) | 303 |
| Bpu10I | CCTNAGC | 1 cut(s) | 228 |
| BpuEI | CTTGAG | 1 cut(s) | 171 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 49 |
| Bse1I | ACTGG | 1 cut(s) | 298 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 49 |
| BseMII | CTCAG | 1 cut(s) | 219 |
| BseNI | ACTGG | 1 cut(s) | 298 |
| BseRI | GAGGAG | 1 cut(s) | 119 |
| BseXI | GCAGC | 3 cut(s) | 139, 181, 223 |
| BsgI | GTGCAG | 3 cut(s) | 146, 188, 230 |
| BshFI | GGCC | 2 cut(s) | 14, 245 |
| BshNI | GGYRCC | 2 cut(s) | 151, 193 |
| BsiHKCI | CYCGRG | 1 cut(s) | 47 |
| BsiSI | CCGG | 1 cut(s) | 242 |
| BslFI | GGGAC | 1 cut(s) | 241 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 49 |
| BsmFI | GGGAC | 1 cut(s) | 241 |
| BsmI | GAATGC | 1 cut(s) | 237 |
| BsnI | GGCC | 2 cut(s) | 14, 245 |
| BsoBI | CYCGRG | 1 cut(s) | 47 |
| BspANI | GGCC | 2 cut(s) | 14, 245 |
| BspCNI | CTCAG | 1 cut(s) | 220 |
| BspLI | GGNNCC | 5 cut(s) | 27, 111, 153, 195, 246 |
| BspT107I | GGYRCC | 2 cut(s) | 151, 193 |
| BsrI | ACTGG | 1 cut(s) | 298 |
| Bst4CI | ACNGT | 1 cut(s) | 278 |
| Bst6I | CTCTTC | 1 cut(s) | 141 |
| BstC8I | GCNNGC | 1 cut(s) | 328 |
| BstDEI | CTNAG | 2 cut(s) | 228, 342 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 32 |
| BstNSI | RCATGY | 1 cut(s) | 307 |
| BstV1I | GCAGC | 3 cut(s) | 139, 181, 223 |
| BsuRI | GGCC | 2 cut(s) | 14, 245 |
| Cac8I | GCNNGC | 1 cut(s) | 328 |
| Cfr13I | GGNCC | 1 cut(s) | 244 |
| CviAII | CATG | 3 cut(s) | 74, 173, 304 |
| CviJI | RGCY | 8 cut(s) | 14, 26, 46, 53, 80, 185, 227, 245 |
| CviKI_1 | RGCY | 8 cut(s) | 14, 26, 46, 53, 80, 185, 227, 245 |
| DdeI | CTNAG | 2 cut(s) | 228, 342 |
| Eam1104I | CTCTTC | 1 cut(s) | 141 |
| EarI | CTCTTC | 1 cut(s) | 141 |
| Eco88I | CYCGRG | 1 cut(s) | 47 |
| FaeI | CATG | 3 cut(s) | 77, 176, 307 |
| FaiI | YATR | 7 cut(s) | 75, 162, 174, 305, 309, 356, 364 |
| FaqI | GGGAC | 1 cut(s) | 241 |
| FatI | CATG | 3 cut(s) | 73, 172, 303 |
| Fnu4HI | GCNGC | 3 cut(s) | 128, 170, 212 |
| Fsp4HI | GCNGC | 3 cut(s) | 128, 170, 212 |
| GluI | GCNGC | 3 cut(s) | 128, 170, 212 |
| HaeIII | GGCC | 2 cut(s) | 14, 245 |
| HapII | CCGG | 1 cut(s) | 242 |
| Hin1II | CATG | 3 cut(s) | 77, 176, 307 |
| HinfI | GANTC | 1 cut(s) | 250 |
| HpaII | CCGG | 1 cut(s) | 242 |
| Hpy166II | GTNNAC | 1 cut(s) | 281 |
| Hpy188III | TCNNGA | 2 cut(s) | 89, 188 |
| Hpy8I | GTNNAC | 1 cut(s) | 281 |
| HpyCH4III | ACNGT | 1 cut(s) | 278 |
| HpyCH4V | TGCA | 6 cut(s) | 85, 127, 169, 211, 267, 326 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 32 |
| HpyF3I | CTNAG | 2 cut(s) | 228, 342 |
| Hsp92II | CATG | 3 cut(s) | 77, 176, 307 |
| LmnI | GCTCC | 2 cut(s) | 6, 31 |
| LpnPI | CCDG | 6 cut(s) | 8, 56, 116, 200, 255, 279 |
| Lsp1109I | GCAGC | 3 cut(s) | 139, 181, 223 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeIII | GTNAC | 1 cut(s) | 269 |
| MboII | GAAGA | 1 cut(s) | 158 |
| MluCI | AATT | 1 cut(s) | 332 |
| MmeI | TCCRAC | 1 cut(s) | 137 |
| MroXI | GAANNNNTTC | 1 cut(s) | 237 |
| MspI | CCGG | 1 cut(s) | 242 |
| Mva1269I | GAATGC | 1 cut(s) | 237 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 32 |
| NlaIII | CATG | 3 cut(s) | 77, 176, 307 |
| NlaIV | GGNNCC | 5 cut(s) | 27, 111, 153, 195, 246 |
| NmuCI | GTSAC | 1 cut(s) | 269 |
| NspI | RCATGY | 1 cut(s) | 307 |
| PaeR7I | CTCGAG | 1 cut(s) | 47 |
| PciI | ACATGT | 1 cut(s) | 303 |
| PctI | GAATGC | 1 cut(s) | 237 |
| PdmI | GAANNNNTTC | 1 cut(s) | 237 |
| PfeI | GAWTC | 1 cut(s) | 250 |
| PkrI | GCNGC | 3 cut(s) | 129, 171, 213 |
| PscI | ACATGT | 1 cut(s) | 303 |
| PspN4I | GGNNCC | 5 cut(s) | 27, 111, 153, 195, 246 |
| PspPI | GGNCC | 1 cut(s) | 244 |
| PspXI | VCTCGAGB | 1 cut(s) | 47 |
| SatI | GCNGC | 3 cut(s) | 128, 170, 212 |
| Sau96I | GGNCC | 1 cut(s) | 244 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| Sfr274I | CTCGAG | 1 cut(s) | 47 |
| SlaI | CTCGAG | 1 cut(s) | 47 |
| SmlI | CTYRAG | 2 cut(s) | 47, 186 |
| SmoI | CTYRAG | 2 cut(s) | 47, 186 |
| Sse9I | AATT | 1 cut(s) | 332 |
| TaaI | ACNGT | 1 cut(s) | 278 |
| TaqI | TCGA | 1 cut(s) | 48 |
| TasI | AATT | 1 cut(s) | 332 |
| TfiI | GAWTC | 1 cut(s) | 250 |
| TseFI | GTSAC | 1 cut(s) | 269 |
| TseI | GCWGC | 3 cut(s) | 127, 169, 211 |
| Tsp45I | GTSAC | 1 cut(s) | 269 |
| TspDTI | ATGAA | 1 cut(s) | 159 |
| XapI | RAATTY | 1 cut(s) | 332 |
| XceI | RCATGY | 1 cut(s) | 307 |
| XhoI | CTCGAG | 1 cut(s) | 47 |
| XmnI | GAANNNNTTC | 1 cut(s) | 237 |