Rh6AG211300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0017025
Physical Location & Seq
Forward (+)
37688187 .. 37692853
4667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG211300.1

Sequence Viewer

Length: 678 bp
ATGAGGGGTTATTTGGTTAGGGCGGTGGGACTGAGATTGAGGTTTAATGTTGCACCACGTACTGCTGAGTTGTTTGCAATTAAGGAGGATCTGGATCATATTGGCTTCATTGGCCATTATATTGAAGATATAGAAGATGGCCCAAATATTATCGACCTTCAAGATGACAGTGTTGGTCCTGATGTAGGGTTTGAATATGGGGATGGGCATTTTCCTTTTGGAGAAGATTTTGGATCAACTGATGATGAAGAAGAGCATGATGGTTTAGGGTCAGATAGGGAGGTTAATGTTGATGGTGATGCAGAAAGGGAAGTTGGGACTGATGGGCAAGATAGGGAAGTTAGGACTGATGGGCCAGATAAGGAAACTGGGCCACATAAGGAAACTGGGCCAGAAAGTGGTGTTGGGCCAACTGGGCCATATAGGAAAACTGGGCCAACTGGGTCACCTAGAGAAACTGGGCAAACATCGACAGCTACACATGGGCCAAATGCAAGAGTGACACTGAAATCTAAGAAGAGGACCATAGACAAAGGGAAAAGGCTTGCAGTCGAAGAAGAAGCAGTGAAGAAGACTAAGAAACAAACTGCTAAGACTAAGAAAGGAAATGCAAAAAGGTATTCAACAAGGTCTGCTGGGGAGAGTTCTACAACAGTTAACAGGCAGTCTGACGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

24.5

Weight (kDa)

5.21

Isoelectric Point (pI)

38.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 398
AciI CCGC 1 cut(s) 23
AclWI GGATC 3 cut(s) 96, 102, 241
AcoI YGGCCR 1 cut(s) 112
AfaI GTAC 1 cut(s) 61
AfiI CCNNNNNNNGG 2 cut(s) 185, 398
AgsI TTSAA 4 cut(s) 125, 161, 194, 624
AjuI GAANNNNNNNTTGG 4 cut(s) 297, 329, 387, 419
AluBI AGCT 1 cut(s) 476
AluI AGCT 1 cut(s) 476
AlwI GGATC 3 cut(s) 96, 102, 241
AoxI GGCC 9 cut(s) 112, 139, 353, 371, 389, 407, 416, 434, 485
AsuHPI GGTGA 2 cut(s) 308, 438
AvaII GGWCC 2 cut(s) 176, 522
BalI TGGCCA 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 578
BccI CCATC 6 cut(s) 131, 197, 254, 287, 317, 344
BfaI CTAG 1 cut(s) 450
BglI GCCNNNNNGGC 1 cut(s) 415
Bme18I GGWCC 2 cut(s) 176, 522
BmrI ACTGGG 6 cut(s) 378, 396, 423, 441, 450, 468
BmsI GCATC 1 cut(s) 289
BmuI ACTGGG 6 cut(s) 378, 396, 423, 441, 450, 468
BpiI GAAGAC 1 cut(s) 578
BsaAI YACGTR 1 cut(s) 59
BsaBI GATNNNNATC 1 cut(s) 93
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 398
Bse1I ACTGG 6 cut(s) 373, 391, 418, 436, 445, 463
Bse8I GATNNNNATC 1 cut(s) 93
BseGI GGATG 1 cut(s) 208
BseJI GATNNNNATC 1 cut(s) 93
BseLI CCNNNNNNNGG 2 cut(s) 185, 398
BseMII CTCAG 2 cut(s) 23, 57
BseNI ACTGG 6 cut(s) 373, 391, 418, 436, 445, 463
BseYI CCCAGC 1 cut(s) 635
BshFI GGCC 9 cut(s) 114, 141, 355, 373, 391, 409, 418, 436, 487
BslFI GGGAC 2 cut(s) 42, 331
BslI CCNNNNNNNGG 2 cut(s) 185, 398
BsmFI GGGAC 2 cut(s) 42, 331
BsnI GGCC 9 cut(s) 114, 141, 355, 373, 391, 409, 418, 436, 487
Bsp143I GATC 3 cut(s) 88, 94, 233
BspACI CCGC 1 cut(s) 23
BspANI GGCC 9 cut(s) 114, 141, 355, 373, 391, 409, 418, 436, 487
BspCNI CTCAG 2 cut(s) 24, 58
BspPI GGATC 3 cut(s) 96, 102, 241
BspQI GCTCTTC 1 cut(s) 246
BsrI ACTGG 6 cut(s) 373, 391, 418, 436, 445, 463
BssMI GATC 3 cut(s) 88, 94, 233
Bst4CI ACNGT 2 cut(s) 170, 655
Bst6I CTCTTC 2 cut(s) 246, 512
BstBAI YACGTR 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 546
BstDEI CTNAG 6 cut(s) 32, 66, 513, 576, 591, 597
BstEII GGTNACC 1 cut(s) 444
BstENI CCTNNNNNAGG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 208
BstKTI GATC 3 cut(s) 91, 97, 236
BstMBI GATC 3 cut(s) 88, 94, 233
BstMWI GCNNNNNNNGC 2 cut(s) 111, 415
BstPI GGTNACC 1 cut(s) 444
BstV2I GAAGAC 1 cut(s) 578
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BsuRI GGCC 9 cut(s) 114, 141, 355, 373, 391, 409, 418, 436, 487
BtsCI GGATG 1 cut(s) 208
BtsI GCAGTG 1 cut(s) 570
BtsIMutI CAGTG 3 cut(s) 175, 503, 570
Cac8I GCNNGC 1 cut(s) 546
Csp6I GTAC 1 cut(s) 60
CviAII CATG 2 cut(s) 257, 482
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 6 cut(s) 32, 66, 513, 576, 591, 597
DpnI GATC 3 cut(s) 90, 96, 235
DpnII GATC 3 cut(s) 88, 94, 233
EaeI YGGCCR 1 cut(s) 112
Eam1104I CTCTTC 2 cut(s) 246, 512
EarI CTCTTC 2 cut(s) 246, 512
Eco47I GGWCC 2 cut(s) 176, 522
Eco91I GGTNACC 1 cut(s) 444
EcoNI CCTNNNNNAGG 1 cut(s) 183
EcoO65I GGTNACC 1 cut(s) 444
FaeI CATG 2 cut(s) 260, 485
FaqI GGGAC 2 cut(s) 42, 331
FatI CATG 2 cut(s) 256, 481
FokI GGATG 1 cut(s) 215
FspBI CTAG 1 cut(s) 450
GsaI CCCAGC 1 cut(s) 639
HaeIII GGCC 9 cut(s) 114, 141, 355, 373, 391, 409, 418, 436, 487
Hin1II CATG 2 cut(s) 260, 485
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HpaI GTTAAC 1 cut(s) 658
HphI GGTGA 2 cut(s) 308, 438
Hpy166II GTNNAC 1 cut(s) 658
Hpy188I TCNGA 2 cut(s) 274, 670
Hpy188III TCNNGA 3 cut(s) 92, 161, 179
Hpy8I GTNNAC 1 cut(s) 658
HpyAV CCTTC 1 cut(s) 167
HpyCH4III ACNGT 2 cut(s) 170, 655
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 6 cut(s) 53, 77, 302, 494, 548, 611
HpyF10VI GCNNNNNNNGC 2 cut(s) 111, 415
HpyF3I CTNAG 6 cut(s) 32, 66, 513, 576, 591, 597
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 2 cut(s) 260, 485
KspAI GTTAAC 1 cut(s) 658
Kzo9I GATC 3 cut(s) 88, 94, 233
LguI GCTCTTC 1 cut(s) 246
LweI GCATC 1 cut(s) 289
MaeI CTAG 1 cut(s) 450
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 2 cut(s) 444, 499
MalI GATC 3 cut(s) 90, 96, 235
MboI GATC 3 cut(s) 88, 94, 233
MflI RGATCY 1 cut(s) 88
MlsI TGGCCA 1 cut(s) 114
MluCI AATT 1 cut(s) 78
MluNI TGGCCA 1 cut(s) 114
MnlI CCTC 4 cut(s) 33, 79, 274, 513
Mox20I TGGCCA 1 cut(s) 114
MscI TGGCCA 1 cut(s) 114
MseI TTAA 4 cut(s) 45, 81, 285, 657
Msp20I TGGCCA 1 cut(s) 114
MwoI GCNNNNNNNGC 2 cut(s) 111, 415
NdeII GATC 3 cut(s) 88, 94, 233
NlaIII CATG 2 cut(s) 260, 485
NmuCI GTSAC 2 cut(s) 444, 499
PciSI GCTCTTC 1 cut(s) 246
PflMI CCANNNNNTGG 1 cut(s) 398
Ppu21I YACGTR 1 cut(s) 59
PspEI GGTNACC 1 cut(s) 444
PspFI CCCAGC 1 cut(s) 635
PsuI RGATCY 1 cut(s) 88
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SapI GCTCTTC 1 cut(s) 246
SaqAI TTAA 4 cut(s) 45, 81, 285, 657
Sau3AI GATC 3 cut(s) 88, 94, 233
SetI ASST 8 cut(s) 44, 61, 159, 285, 451, 478, 620, 632
SfaNI GCATC 1 cut(s) 289
SfiI GGCCNNNNNGGCC 1 cut(s) 415
SinI GGWCC 2 cut(s) 176, 522
Sse9I AATT 1 cut(s) 78
SsiI CCGC 1 cut(s) 23
SspI AATATT 1 cut(s) 148
SspMI CTAG 1 cut(s) 450
TaaI ACNGT 2 cut(s) 170, 655
TaiI ACGT 1 cut(s) 61
TaqI TCGA 3 cut(s) 153, 470, 552
TasI AATT 1 cut(s) 78
Tru1I TTAA 4 cut(s) 45, 81, 285, 657
Tru9I TTAA 4 cut(s) 45, 81, 285, 657
TscAI CASTG 3 cut(s) 175, 510, 570
TseFI GTSAC 2 cut(s) 444, 499
Tsp45I GTSAC 2 cut(s) 444, 499
TspDTI ATGAA 2 cut(s) 97, 261
TspRI CASTG 3 cut(s) 175, 510, 570
Van91I CCANNNNNTGG 1 cut(s) 398
VpaK11BI GGWCC 2 cut(s) 176, 522
XagI CCTNNNNNAGG 1 cut(s) 183
XspI CTAG 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.