Rh3CG100000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0017025
Physical Location & Seq
Forward (+)
7883232 .. 7893454
10223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG100000.1

Sequence Viewer

Length: 795 bp
ATGACGGAAGAGCTTGATCAGATGGTGTTCTGCGGCTGTAATTTGCTTTTATGTTATGATATAGAAGATGGCCCAAATGTTATCGACCTTCAAGATGAAGGTGTTGGTCCTGATGTAGGGTTTGAATATGGGGACGGGCCTTTTCCTTTTGGAGAAGATTTTGGATCAACTGATGATGAAGAAAAGTATGATGGTTTAGGGTCAGATAGGGAGGTTAATGTTGATGGTGATGCAGAAAGGGAAGTTGGGACTGATGGGCCTGATAGGGAAGTTAGAACTGATGGGCCAGATAGGGAAACTGGGCCATCTGGGCCACATAAGGAAACTGGGCCAGAAAGTGGTGTTGGGCCAACTGGGCCACCTAGAGAAACTAGGCAAACATCGACAGCTACACATGGGCCAAATGCAAGAGTGACACTGAAATCTAAGAAGAGGACCATGGACAAAGGGAAAAGGCCTGCAGTCAAAGAAGAAGCAGTGAAGAAGACTAAGAAACAAACTGCTAAGACCAAGAAAGGAAATGCAAAGAGGTATTCAACAAGGTCTGCTGGGGAGAGTTCTACAACAGCTAACAGGCAGTCTGACGAGAAAGCTCCAAATGATAATGACCAGTCTGAGCCTCAACATGAGGAGGTTGAACATCAGGCTGTGCAACAGGAGTCACAACAGTCCACCAATGGAAACTGGGCAACACAGTCGAGTCAAGCTCCACAGAGTTCCTCATCTAGGCTTGGGTTCACACACAGGACGTTCAAATCCCTTGCACACAGAAAACCAAAGACTCAGAACATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

264

Amino Acids

28.82

Weight (kDa)

5.15

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 338
AciI CCGC 1 cut(s) 33
AclWI GGATC 1 cut(s) 172
AfiI CCNNNNNNNGG 3 cut(s) 116, 338, 726
AgsI TTSAA 5 cut(s) 92, 125, 537, 638, 754
AjuI GAANNNNNNNTTGG 4 cut(s) 228, 260, 327, 359
AluBI AGCT 5 cut(s) 13, 389, 569, 593, 707
AluI AGCT 5 cut(s) 13, 389, 569, 593, 707
AlwI GGATC 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 239
AvaII GGWCC 2 cut(s) 107, 435
BbsI GAAGAC 1 cut(s) 491
BccI CCATC 7 cut(s) 16, 62, 185, 218, 248, 275, 313
BcgI CGANNNNNNTGC 2 cut(s) 678, 712
BclI TGATCA 1 cut(s) 16
BfaI CTAG 3 cut(s) 363, 372, 726
BfmI CTRYAG 1 cut(s) 459
BglI GCCNNNNNGGC 2 cut(s) 310, 355
BisI GCNGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 35
Bme18I GGWCC 2 cut(s) 107, 435
BmrI ACTGGG 4 cut(s) 309, 336, 363, 694
BmsI GCATC 1 cut(s) 220
BmuI ACTGGG 4 cut(s) 309, 336, 363, 694
BpiI GAAGAC 1 cut(s) 491
BplI GAGNNNNNCTC 2 cut(s) 691, 723
BsaJI CCNNGG 1 cut(s) 438
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 338, 726
Bse1I ACTGG 5 cut(s) 304, 331, 358, 610, 689
BseDI CCNNGG 1 cut(s) 438
BseLI CCNNNNNNNGG 3 cut(s) 116, 338, 726
BseMII CTCAG 1 cut(s) 606
BseNI ACTGG 5 cut(s) 304, 331, 358, 610, 689
BseRI GAGGAG 1 cut(s) 644
BseYI CCCAGC 1 cut(s) 548
BslFI GGGAC 2 cut(s) 146, 262
BslI CCNNNNNNNGG 3 cut(s) 116, 338, 726
BsmFI GGGAC 2 cut(s) 146, 262
Bsp143I GATC 2 cut(s) 16, 164
Bsp19I CCATGG 1 cut(s) 438
BspACI CCGC 1 cut(s) 33
BspCNI CTCAG 1 cut(s) 607
BspMAI CTGCAG 1 cut(s) 463
BspPI GGATC 1 cut(s) 172
BspQI GCTCTTC 1 cut(s) 3
BsrI ACTGG 5 cut(s) 304, 331, 358, 610, 689
BssECI CCNNGG 1 cut(s) 438
BssMI GATC 2 cut(s) 16, 164
BssT1I CCWWGG 1 cut(s) 438
Bst4CI ACNGT 2 cut(s) 669, 696
Bst6I CTCTTC 2 cut(s) 3, 425
BstC8I GCNNGC 1 cut(s) 459
BstDEI CTNAG 5 cut(s) 426, 489, 504, 615, 783
BstDSI CCRYGG 1 cut(s) 438
BstENI CCTNNNNNAGG 2 cut(s) 114, 724
BstKTI GATC 2 cut(s) 19, 167
BstMBI GATC 2 cut(s) 16, 164
BstMWI GCNNNNNNNGC 2 cut(s) 310, 355
BstSFI CTRYAG 1 cut(s) 459
BstV2I GAAGAC 1 cut(s) 491
BtgI CCRYGG 1 cut(s) 438
BtsI GCAGTG 1 cut(s) 483
BtsIMutI CAGTG 2 cut(s) 416, 483
Cac8I GCNNGC 1 cut(s) 459
CviAII CATG 3 cut(s) 395, 439, 626
DdeI CTNAG 5 cut(s) 426, 489, 504, 615, 783
DpnI GATC 2 cut(s) 18, 166
DpnII GATC 2 cut(s) 16, 164
Eam1104I CTCTTC 2 cut(s) 3, 425
EarI CTCTTC 2 cut(s) 3, 425
Eco130I CCWWGG 1 cut(s) 438
Eco147I AGGCCT 1 cut(s) 457
Eco47I GGWCC 2 cut(s) 107, 435
EcoNI CCTNNNNNAGG 2 cut(s) 114, 724
EcoT14I CCWWGG 1 cut(s) 438
ErhI CCWWGG 1 cut(s) 438
FaeI CATG 3 cut(s) 398, 442, 629
FaiI YATR 9 cut(s) 52, 57, 62, 129, 189, 318, 396, 440, 627
FaqI GGGAC 2 cut(s) 146, 262
FatI CATG 3 cut(s) 394, 438, 625
FbaI TGATCA 1 cut(s) 16
Fnu4HI GCNGC 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 34
FspBI CTAG 3 cut(s) 363, 372, 726
GluI GCNGC 1 cut(s) 34
GsaI CCCAGC 1 cut(s) 552
Hin1II CATG 3 cut(s) 398, 442, 629
HinfI GANTC 3 cut(s) 659, 700, 781
HphI GGTGA 1 cut(s) 239
Hpy166II GTNNAC 2 cut(s) 672, 738
Hpy188I TCNGA 6 cut(s) 21, 205, 583, 616, 786, 794
Hpy188III TCNNGA 2 cut(s) 92, 110
Hpy8I GTNNAC 2 cut(s) 672, 738
HpyAV CCTTC 2 cut(s) 92, 98
HpyCH4III ACNGT 2 cut(s) 669, 696
HpyCH4IV ACGT 1 cut(s) 749
HpyCH4V TGCA 6 cut(s) 233, 407, 461, 524, 652, 764
HpyF10VI GCNNNNNNNGC 2 cut(s) 310, 355
HpyF3I CTNAG 5 cut(s) 426, 489, 504, 615, 783
HpySE526I ACGT 1 cut(s) 749
Hsp92II CATG 3 cut(s) 398, 442, 629
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 2 cut(s) 16, 164
LguI GCTCTTC 1 cut(s) 3
LmnI GCTCC 2 cut(s) 598, 712
LweI GCATC 1 cut(s) 220
MaeI CTAG 3 cut(s) 363, 372, 726
MaeII ACGT 1 cut(s) 749
MaeIII GTNAC 2 cut(s) 412, 660
MalI GATC 2 cut(s) 18, 166
MboI GATC 2 cut(s) 16, 164
MboII GAAGA 8 cut(s) 20, 77, 167, 191, 442, 482, 493, 496
MluCI AATT 1 cut(s) 40
MlyI GAGTC 3 cut(s) 668, 709, 775
MnlI CCTC 7 cut(s) 205, 426, 522, 622, 625, 630, 730
MseI TTAA 1 cut(s) 216
MwoI GCNNNNNNNGC 2 cut(s) 310, 355
NcoI CCATGG 1 cut(s) 438
NdeII GATC 2 cut(s) 16, 164
NlaIII CATG 3 cut(s) 398, 442, 629
NmuCI GTSAC 2 cut(s) 412, 660
PceI AGGCCT 1 cut(s) 457
PciSI GCTCTTC 1 cut(s) 3
PflMI CCANNNNNTGG 1 cut(s) 338
PkrI GCNGC 1 cut(s) 35
PleI GAGTC 3 cut(s) 667, 708, 775
PpsI GAGTC 3 cut(s) 667, 708, 775
PspFI CCCAGC 1 cut(s) 548
PstI CTGCAG 1 cut(s) 463
SapI GCTCTTC 1 cut(s) 3
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 1 cut(s) 34
Sau3AI GATC 2 cut(s) 16, 164
SchI GAGTC 3 cut(s) 668, 709, 775
SfaNI GCATC 1 cut(s) 220
SfcI CTRYAG 1 cut(s) 459
SfiI GGCCNNNNNGGCC 2 cut(s) 310, 355
SinI GGWCC 2 cut(s) 107, 435
Sse9I AATT 1 cut(s) 40
SseBI AGGCCT 1 cut(s) 457
SsiI CCGC 1 cut(s) 33
SspMI CTAG 3 cut(s) 363, 372, 726
StuI AGGCCT 1 cut(s) 457
StyI CCWWGG 1 cut(s) 438
TaaI ACNGT 2 cut(s) 669, 696
TaiI ACGT 1 cut(s) 752
TaqI TCGA 3 cut(s) 84, 383, 698
TasI AATT 1 cut(s) 40
TauI GCSGC 1 cut(s) 36
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 2 cut(s) 423, 483
TseFI GTSAC 2 cut(s) 412, 660
Tsp45I GTSAC 2 cut(s) 412, 660
TspDTI ATGAA 2 cut(s) 111, 192
TspGWI ACGGA 1 cut(s) 20
TspRI CASTG 2 cut(s) 423, 483
Van91I CCANNNNNTGG 1 cut(s) 338
VpaK11BI GGWCC 2 cut(s) 107, 435
XagI CCTNNNNNAGG 2 cut(s) 114, 724
XspI CTAG 3 cut(s) 363, 372, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.