Rh2AG635500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0017025
Physical Location & Seq
Reverse (-)
86090769 .. 86092567
1799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG635500.1

Sequence Viewer

Length: 486 bp
ATGGCAAAATACTGGCGATACTTTGGTTTGGATGGGGAGCGAGGCCACTATTCAGATATAGAAGATGGCCCAAATATAATCAACCATGAAGATAAAGGTGTTGATCCTGATGTAGGGTTTGAATATGGGGATGGGTCTTTTCCTTTTGGAGAAGATTTTGGATCAATTGATGATGAAGAAGAGCATGACGGTTTAGAGTCAGATAGGGAGGTTAATGTTGATGGTGATGTAGAAAGGGATGTTGGGACTGATGGGCAAGATAGGGAAGTTAGGAATGGTAGGCCAGATAGGGAAACTGGGCCAACTCGGCCACATAAGGAAACTGGGCCAGATAGGAAAACTGGGCCAACTGGGCCACCTAGAGAAACTGGGCAAACATCGACAGCTACACAGAGGGCCCATGGGCCAAATGCAAAAGTGACACTGAAATCTAAGAAGAAGGCCATGGATAAGGGAAAAGGCCTGCAGTCAAAGAAGAAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.81

Weight (kDa)

5.08

Isoelectric Point (pI)

22.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 98, 169
AcoI YGGCCR 1 cut(s) 308
AfiI CCNNNNNNNGG 1 cut(s) 113
AgsI TTSAA 1 cut(s) 122
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AluBI AGCT 1 cut(s) 386
AluI AGCT 1 cut(s) 386
AlwI GGATC 2 cut(s) 98, 169
ApaI GGGCCC 1 cut(s) 400
AspS9I GGNCC 8 cut(s) 68, 299, 326, 344, 353, 396, 397, 404
AsuHPI GGTGA 1 cut(s) 236
BaeGI GKGCMC 1 cut(s) 400
BaeI ACNNNNGTAYC 2 cut(s) 10, 43
BanII GRGCYC 1 cut(s) 400
BccI CCATC 5 cut(s) 26, 59, 125, 215, 245
BfaI CTAG 1 cut(s) 360
BfmI CTRYAG 1 cut(s) 464
BglI GCCNNNNNGGC 2 cut(s) 307, 352
BmgT120I GGNCC 8 cut(s) 68, 299, 326, 344, 353, 396, 397, 404
BmiI GGNNCC 1 cut(s) 398
BmrI ACTGGG 5 cut(s) 306, 333, 351, 360, 378
BmuI ACTGGG 5 cut(s) 306, 333, 351, 360, 378
BsaJI CCNNGG 2 cut(s) 400, 444
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse1I ACTGG 6 cut(s) 17, 301, 328, 346, 355, 373
BseDI CCNNGG 2 cut(s) 400, 444
BseGI GGATG 3 cut(s) 37, 136, 244
BseLI CCNNNNNNNGG 1 cut(s) 113
BseNI ACTGG 6 cut(s) 17, 301, 328, 346, 355, 373
BseSI GKGCMC 1 cut(s) 400
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 259
Bsp120I GGGCCC 1 cut(s) 396
Bsp1286I GDGCHC 1 cut(s) 400
Bsp143I GATC 2 cut(s) 103, 161
Bsp19I CCATGG 2 cut(s) 400, 444
BspLI GGNNCC 1 cut(s) 398
BspMAI CTGCAG 1 cut(s) 468
BspPI GGATC 2 cut(s) 98, 169
BspQI GCTCTTC 1 cut(s) 174
BsrI ACTGG 6 cut(s) 17, 301, 328, 346, 355, 373
BssECI CCNNGG 2 cut(s) 400, 444
BssMI GATC 2 cut(s) 103, 161
BssT1I CCWWGG 2 cut(s) 400, 444
Bst4CI ACNGT 1 cut(s) 191
Bst6I CTCTTC 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 464
BstDEI CTNAG 1 cut(s) 432
BstDSI CCRYGG 2 cut(s) 400, 444
BstENI CCTNNNNNAGG 1 cut(s) 111
BstF5I GGATG 3 cut(s) 37, 136, 244
BstKTI GATC 2 cut(s) 106, 164
BstMBI GATC 2 cut(s) 103, 161
BstMWI GCNNNNNNNGC 2 cut(s) 307, 352
BstSFI CTRYAG 1 cut(s) 464
BstSLI GKGCMC 1 cut(s) 400
BtgI CCRYGG 2 cut(s) 400, 444
BtsCI GGATG 3 cut(s) 37, 136, 244
BtsIMutI CAGTG 1 cut(s) 422
Cac8I GCNNGC 1 cut(s) 464
Cfr13I GGNCC 8 cut(s) 68, 299, 326, 344, 353, 396, 397, 404
CviAII CATG 4 cut(s) 86, 185, 401, 445
DdeI CTNAG 1 cut(s) 432
DpnI GATC 2 cut(s) 105, 163
DpnII GATC 2 cut(s) 103, 161
EaeI YGGCCR 1 cut(s) 308
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco130I CCWWGG 2 cut(s) 400, 444
Eco147I AGGCCT 1 cut(s) 462
Eco24I GRGCYC 1 cut(s) 400
EcoNI CCTNNNNNAGG 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 396
EcoT14I CCWWGG 2 cut(s) 400, 444
EcoT38I GRGCYC 1 cut(s) 400
ErhI CCWWGG 2 cut(s) 400, 444
FaeI CATG 4 cut(s) 89, 188, 404, 448
FaiI YATR 8 cut(s) 59, 77, 87, 126, 186, 315, 402, 446
FaqI GGGAC 1 cut(s) 259
FatI CATG 4 cut(s) 85, 184, 400, 444
FokI GGATG 3 cut(s) 44, 143, 251
FriOI GRGCYC 1 cut(s) 400
FspBI CTAG 1 cut(s) 360
Hin1II CATG 4 cut(s) 89, 188, 404, 448
HinfI GANTC 1 cut(s) 197
HphI GGTGA 1 cut(s) 236
Hpy188I TCNGA 2 cut(s) 55, 202
Hpy188III TCNNGA 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 433
HpyCH4III ACNGT 1 cut(s) 191
HpyCH4V TGCA 2 cut(s) 413, 466
HpyF10VI GCNNNNNNNGC 2 cut(s) 307, 352
HpyF3I CTNAG 1 cut(s) 432
Hsp92II CATG 4 cut(s) 89, 188, 404, 448
Kzo9I GATC 2 cut(s) 103, 161
LguI GCTCTTC 1 cut(s) 174
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 9 cut(s) 120, 282, 297, 309, 327, 336, 342, 354, 476
MaeI CTAG 1 cut(s) 360
MaeIII GTNAC 1 cut(s) 418
MalI GATC 2 cut(s) 105, 163
MboI GATC 2 cut(s) 103, 161
MboII GAAGA 6 cut(s) 74, 101, 164, 188, 191, 448
MfeI CAATTG 1 cut(s) 165
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 1 cut(s) 165
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 3 cut(s) 35, 202, 387
MseI TTAA 1 cut(s) 213
MunI CAATTG 1 cut(s) 165
MwoI GCNNNNNNNGC 2 cut(s) 307, 352
NcoI CCATGG 2 cut(s) 400, 444
NdeII GATC 2 cut(s) 103, 161
NlaIII CATG 4 cut(s) 89, 188, 404, 448
NlaIV GGNNCC 1 cut(s) 398
NmeAIII GCCGAG 1 cut(s) 286
NmuCI GTSAC 1 cut(s) 418
PceI AGGCCT 1 cut(s) 462
PciSI GCTCTTC 1 cut(s) 174
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 398
PspOMI GGGCCC 1 cut(s) 396
PspPI GGNCC 8 cut(s) 68, 299, 326, 344, 353, 396, 397, 404
PstI CTGCAG 1 cut(s) 468
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 1 cut(s) 213
Sau3AI GATC 2 cut(s) 103, 161
Sau96I GGNCC 8 cut(s) 68, 299, 326, 344, 353, 396, 397, 404
SchI GAGTC 1 cut(s) 206
SduI GDGCHC 1 cut(s) 400
SetI ASST 4 cut(s) 100, 213, 361, 388
SfcI CTRYAG 1 cut(s) 464
SfiI GGCCNNNNNGGCC 2 cut(s) 307, 352
Sse9I AATT 1 cut(s) 165
SseBI AGGCCT 1 cut(s) 462
SspMI CTAG 1 cut(s) 360
StuI AGGCCT 1 cut(s) 462
StyI CCWWGG 2 cut(s) 400, 444
TaaI ACNGT 1 cut(s) 191
TaqI TCGA 1 cut(s) 380
TasI AATT 1 cut(s) 165
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 1 cut(s) 429
TseFI GTSAC 1 cut(s) 418
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 2 cut(s) 102, 189
TspRI CASTG 1 cut(s) 429
XagI CCTNNNNNAGG 1 cut(s) 111
XspI CTAG 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.