Rh4DG139300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0017025
Physical Location & Seq
Reverse (-)
27705851 .. 27721466
15616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG139300.1

Sequence Viewer

Length: 285 bp
ATGGCTCCAAATGACAATGACCAAGCTGAAGCTCAACATGAGGCTGTGCAGCAGGAGGTTCAAAATGAAGAGGTGCCCACTGATAATGTGCAGCAGGAGGTTCAAGCTGAGGAAAGCATTCCAGCCCCTGGTTCTGTGCCTTTTATGCAGTCACAACAGTCCACCAATGTATTCTGGGCAACACAGTCCAGTCAAGCTCAAGAGAGCTCCTCATCCAGGCTTGGGTTCGCACATAAGAGGTTCAAATCCCTTGCACACAGAAAATCAAAATCTCAGAACACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.44

Weight (kDa)

5.0

Isoelectric Point (pI)

73.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 73
AccB7I CCANNNNNTGG 1 cut(s) 128
AcuI CTGAAG 1 cut(s) 48
AfiI CCNNNNNNNGG 3 cut(s) 128, 216, 222
AgsI TTSAA 3 cut(s) 62, 104, 244
AjnI CCWGG 2 cut(s) 127, 215
AluBI AGCT 5 cut(s) 26, 32, 107, 197, 207
AluI AGCT 5 cut(s) 26, 32, 107, 197, 207
Alw21I GWGCWC 1 cut(s) 209
AlwNI CAGNNNCTG 1 cut(s) 128
ApeKI GCWGC 2 cut(s) 49, 91
Asp700I GAANNNNTTC 1 cut(s) 117
BaeGI GKGCMC 1 cut(s) 78
BanI GGYRCC 1 cut(s) 73
BanII GRGCYC 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 209
BbvCI CCTCAGC 1 cut(s) 108
BbvI GCAGC 2 cut(s) 61, 103
BciT130I CCWGG 2 cut(s) 129, 217
BisI GCNGC 2 cut(s) 50, 92
BlsI GCNGC 2 cut(s) 51, 93
Bme1390I CCNGG 2 cut(s) 129, 217
BmiI GGNNCC 2 cut(s) 6, 75
BmrFI CCNGG 2 cut(s) 129, 217
BplI GAGNNNNNCTC 2 cut(s) 194, 226
Bpu10I CCTNAGC 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 127
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 216, 222
Bse1I ACTGG 1 cut(s) 189
BseBI CCWGG 2 cut(s) 129, 217
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 212
BseLI CCNNNNNNNGG 3 cut(s) 128, 216, 222
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 1 cut(s) 189
BseRI GAGGAG 1 cut(s) 199
BseSI GKGCMC 1 cut(s) 78
BseXI GCAGC 2 cut(s) 61, 103
BsgI GTGCAG 2 cut(s) 68, 110
BshNI GGYRCC 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 209
BslI CCNNNNNNNGG 3 cut(s) 128, 216, 222
BsmI GAATGC 1 cut(s) 117
Bsp1286I GDGCHC 2 cut(s) 78, 209
BspCNI CTCAG 1 cut(s) 100
BspLI GGNNCC 2 cut(s) 6, 75
BspT107I GGYRCC 1 cut(s) 73
BsrI ACTGG 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 127
Bst2UI CCWGG 2 cut(s) 129, 217
Bst4CI ACNGT 2 cut(s) 159, 186
Bst6I CTCTTC 1 cut(s) 63
BstDEI CTNAG 2 cut(s) 108, 273
BstENI CCTNNNNNAGG 1 cut(s) 214
BstF5I GGATG 1 cut(s) 212
BstMWI GCNNNNNNNGC 1 cut(s) 145
BstNI CCWGG 2 cut(s) 129, 217
BstSCI CCNGG 2 cut(s) 127, 215
BstSLI GKGCMC 1 cut(s) 78
BstV1I GCAGC 2 cut(s) 61, 103
BtsCI GGATG 1 cut(s) 212
BtsIMutI CAGTG 1 cut(s) 78
CaiI CAGNNNCTG 1 cut(s) 128
CviAII CATG 2 cut(s) 38, 282
CviJI RGCY 9 cut(s) 5, 26, 32, 44, 107, 125, 197, 207, 220
CviKI_1 RGCY 9 cut(s) 5, 26, 32, 44, 107, 125, 197, 207, 220
DdeI CTNAG 2 cut(s) 108, 273
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Ecl136II GAGCTC 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 209
Eco53kI GAGCTC 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 48
EcoICRI GAGCTC 1 cut(s) 207
EcoNI CCTNNNNNAGG 1 cut(s) 214
EcoRII CCWGG 2 cut(s) 127, 215
EcoT38I GRGCYC 1 cut(s) 209
FaeI CATG 2 cut(s) 41, 285
FaiI YATR 4 cut(s) 39, 146, 234, 283
FatI CATG 2 cut(s) 37, 281
Fnu4HI GCNGC 2 cut(s) 50, 92
FokI GGATG 1 cut(s) 199
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 2 cut(s) 50, 92
GluI GCNGC 2 cut(s) 50, 92
Hin1II CATG 2 cut(s) 41, 285
Hpy166II GTNNAC 1 cut(s) 162
Hpy188I TCNGA 1 cut(s) 276
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 1 cut(s) 162
HpyCH4III ACNGT 2 cut(s) 159, 186
HpyCH4V TGCA 4 cut(s) 49, 91, 148, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 145
HpyF3I CTNAG 2 cut(s) 108, 273
Hsp92II CATG 2 cut(s) 41, 285
LmnI GCTCC 2 cut(s) 10, 212
LpnPI CCDG 9 cut(s) 38, 80, 114, 135, 141, 160, 202, 202, 229
Lsp1109I GCAGC 2 cut(s) 61, 103
MaeIII GTNAC 1 cut(s) 150
MboII GAAGA 1 cut(s) 80
MhlI GDGCHC 2 cut(s) 78, 209
MnlI CCTC 7 cut(s) 34, 49, 64, 91, 103, 220, 231
MroXI GAANNNNTTC 1 cut(s) 117
MspR9I CCNGG 2 cut(s) 129, 217
Mva1269I GAATGC 1 cut(s) 117
MvaI CCWGG 2 cut(s) 129, 217
MwoI GCNNNNNNNGC 1 cut(s) 145
NlaIII CATG 2 cut(s) 41, 285
NlaIV GGNNCC 2 cut(s) 6, 75
NmuCI GTSAC 1 cut(s) 150
PctI GAATGC 1 cut(s) 117
PdmI GAANNNNTTC 1 cut(s) 117
PflMI CCANNNNNTGG 1 cut(s) 128
PkrI GCNGC 2 cut(s) 51, 93
Psp124BI GAGCTC 1 cut(s) 209
Psp6I CCWGG 2 cut(s) 127, 215
PspGI CCWGG 2 cut(s) 127, 215
PspN4I GGNNCC 2 cut(s) 6, 75
PstNI CAGNNNCTG 1 cut(s) 128
SacI GAGCTC 1 cut(s) 209
SatI GCNGC 2 cut(s) 50, 92
ScrFI CCNGG 2 cut(s) 129, 217
SduI GDGCHC 2 cut(s) 78, 209
SetI ASST 9 cut(s) 28, 34, 60, 75, 102, 109, 199, 209, 242
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
SstI GAGCTC 1 cut(s) 209
StyD4I CCNGG 2 cut(s) 127, 215
TaaI ACNGT 2 cut(s) 159, 186
TscAI CASTG 1 cut(s) 85
TseFI GTSAC 1 cut(s) 150
TseI GCWGC 2 cut(s) 49, 91
Tsp45I GTSAC 1 cut(s) 150
TspDTI ATGAA 1 cut(s) 81
TspRI CASTG 1 cut(s) 85
Van91I CCANNNNNTGG 1 cut(s) 128
XagI CCTNNNNNAGG 1 cut(s) 214
XmnI GAANNNNTTC 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.