Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0017025

Physical Location & Seq

Genomic Coordinates Reverse (-)

16260092 .. 16266135

Gene Structure 6044 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G009690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGCACAGGACAACCAAGATGCTGGAAATGTACATGTGTGCTTAGTAGAAAAGAAGGTGTTTACTGAAGAGGAATTATGTGTGTTTCAGGAGGATCTGGATCATATTGGCTTCATTGGCCATTATATTGAAGATATAGAAGATGACCCAAATGTTATCGACCTTCAAGATGAAGGTGTTGGTCCTGATGTAGGGTTTGAATATGGGGATGGGCCTTTTCCTTTTGGAGAAGATTTTGGATCAACTGATGATGAAGAAGAGCATGATGGTTTATGGTCAGATAGGGAGGTTAATGTTGATGGTGATGCAGAAAGGGAAGTTGGGACTGATGGGCAAGATAGGGAAGTTAGGACTGATGGGCTAGATAGGGAAATTGGGTCATCTGGGCCACATAAGGAAACTGGGCCAGAACGTGGTGTTGGACAAACTGGGCCACCTAGAGAAACTAGGCAAACATCGACAGCTACACATGGGCCAAATGCAAGAGTGACACTGAAATCTAAGAAGAGGACCATGGATAAAGGGAAAAGGCCTGCAGTCGAAGAAGAAGCAGTGAAGAAGACTAAGAAACAAACTGCTAAGACCAAGAAAGGAAAGGCAAAGAGGTATTCAACAAGGTCTGCTAGGGAGAGTTCTACAACAGCTAACAGGCAGTCTGATGAGGCATATGAGCCAATCATGTACCCAATAACTGAAGTGCAAGAGTGGGAGATTATAAACAGGCCTATTGCCCCACCTCTTTATAGGAGACAGCTTGGGAGACCTAAGATGGCTAGAAATAAAGAAGCAGGTGAAGTGGAACCACCAGTTGGATTAACCAAGCTGCCCAAAGTTTATTACACTCAAGTTAAATGTGGCATCTGTAAGAAGAAAGGCCACAATAGGAGGACATGTCTCAGCAGAAATCAGGCTCCAAATGATAATGACCAGTCTGAGCCTCAACATGAGGAGGTTGAACATCAGGCTGTGCAGCAGGAGGTTCAAAATGAGGGGGTGCCAACTGATAATGTGCAGCAGGAGGTTCAAGCTCAAGAGGTGCCAACTGATAATGTGCAACAGGAGGTTCAAGTTGAAGAAAGCATTCCAGCATCTGATTCTGTGCCTTTTATGCAGTCACAACAGTCCACCAATGGAAACTGGGCAACACAGTTGAGTCAAGCTCCACAGAGTTCCTCATCTAGGCTTGGGTTCACACACAGGACGTTCAAATCCCTTGCACACAGAAAACCAAAGACTCAGAATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

415

Amino Acids

46.47

Weight (kDa)

5.15

Isoelectric Point (pI)

57.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017025)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000013391
rosa_roxburghii	Rroxscaffold_2G00135960
rosa_samantha	Rh1DG101500 Rh1DG101600 Rh1DG164400 Rh2AG635500 Rh2DG302400 Rh3CG100000 Rh4DG139300 Rh5AG332000 Rh6AG211300 Rh6BG107400
rosa_wichuraiana	Rw0G022730 Rw6G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	716
AarI	CACCTGC	1 cut(s)	779
Acc36I	ACCTGC	1 cut(s)	779
AccB1I	GGYRCC	2 cut(s)	994, 1036
AccB7I	CCANNNNNTGG	2 cut(s)	413, 809
AclWI	GGATC	3 cut(s)	102, 108, 247
AcoI	YGGCCR	1 cut(s)	118
AcuI	CTGAAG	2 cut(s)	87, 714
AfaI	GTAC	2 cut(s)	33, 683
AfiI	CCNNNNNNNGG	4 cut(s)	191, 413, 809, 1179
AflIII	ACRYGT	2 cut(s)	34, 890
AjuI	GAANNNNNNNTTGG	6 cut(s)	303, 335, 402, 434, 792, 824
AluBI	AGCT	6 cut(s)	464, 644, 754, 823, 1028, 1160
AluI	AGCT	6 cut(s)	464, 644, 754, 823, 1028, 1160
Alw26I	GTCTC	3 cut(s)	742, 754, 899
AlwI	GGATC	3 cut(s)	102, 108, 247
AlwNI	CAGNNNCTG	1 cut(s)	1091
AoxI	GGCC	9 cut(s)	118, 212, 386, 404, 431, 473, 530, 722, 874
ApeKI	GCWGC	3 cut(s)	823, 970, 1012
Asp700I	GAANNNNTTC	1 cut(s)	1080
AspS9I	GGNCC	7 cut(s)	182, 212, 386, 404, 431, 473, 510
AsuHPI	GGTGA	2 cut(s)	314, 803
AvaII	GGWCC	2 cut(s)	182, 510
BalI	TGGCCA	1 cut(s)	120
BanI	GGYRCC	2 cut(s)	994, 1036
BbsI	GAAGAC	1 cut(s)	566
BbvI	GCAGC	3 cut(s)	810, 982, 1024
BccI	CCATC	6 cut(s)	203, 260, 293, 323, 350, 763
BcoDI	GTCTC	3 cut(s)	742, 754, 899
BfaI	CTAG	6 cut(s)	362, 438, 447, 624, 774, 1179
BfmI	CTRYAG	1 cut(s)	534
BfuAI	ACCTGC	1 cut(s)	779
BisI	GCNGC	3 cut(s)	824, 971, 1013
BlsI	GCNGC	3 cut(s)	825, 972, 1014
Bme18I	GGWCC	2 cut(s)	182, 510
BmgT120I	GGNCC	7 cut(s)	182, 212, 386, 404, 431, 473, 510
BmiI	GGNNCC	4 cut(s)	801, 912, 996, 1038
BmrI	ACTGGG	3 cut(s)	411, 438, 1147
BmsI	GCATC	4 cut(s)	10, 295, 867, 1097
BmuI	ACTGGG	3 cut(s)	411, 438, 1147
BpiI	GAAGAC	1 cut(s)	566
BplI	GAGNNNNNCTC	2 cut(s)	1144, 1176
BpuEI	CTTGAG	2 cut(s)	828, 1014
BsaBI	GATNNNNATC	1 cut(s)	99
BsaI	GGTCTC	1 cut(s)	754
BsaJI	CCNNGG	1 cut(s)	513
BsaXI	ACNNNNNCTCC	2 cut(s)	877, 907
Bsc4I	CCNNNNNNNGG	4 cut(s)	191, 413, 809, 1179
Bse1I	ACTGG	5 cut(s)	406, 433, 806, 928, 1142
Bse8I	GATNNNNATC	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	1 cut(s)	214
BseJI	GATNNNNATC	1 cut(s)	99
BseLI	CCNNNNNNNGG	4 cut(s)	191, 413, 809, 1179
BseMII	CTCAG	2 cut(s)	910, 924
BseNI	ACTGG	5 cut(s)	406, 433, 806, 928, 1142
BseRI	GAGGAG	1 cut(s)	962
BseXI	GCAGC	3 cut(s)	810, 982, 1024
BsgI	GTGCAG	2 cut(s)	989, 1031
BshFI	GGCC	9 cut(s)	120, 214, 388, 406, 433, 475, 532, 724, 876
BshNI	GGYRCC	2 cut(s)	994, 1036
BslFI	GGGAC	1 cut(s)	337
BslI	CCNNNNNNNGG	4 cut(s)	191, 413, 809, 1179
BsmAI	GTCTC	3 cut(s)	742, 754, 899
BsmFI	GGGAC	1 cut(s)	337
BsmI	GAATGC	1 cut(s)	1080
BsnI	GGCC	9 cut(s)	120, 214, 388, 406, 433, 475, 532, 724, 876
Bso31I	GGTCTC	1 cut(s)	754
Bsp1407I	TGTACA	1 cut(s)	31
Bsp143I	GATC	3 cut(s)	94, 100, 239
Bsp19I	CCATGG	1 cut(s)	513
BspANI	GGCC	9 cut(s)	120, 214, 388, 406, 433, 475, 532, 724, 876
BspCNI	CTCAG	2 cut(s)	909, 925
BspLI	GGNNCC	4 cut(s)	801, 912, 996, 1038
BspMAI	CTGCAG	1 cut(s)	538
BspMI	ACCTGC	1 cut(s)	779
BspPI	GGATC	3 cut(s)	102, 108, 247
BspQI	GCTCTTC	1 cut(s)	252
BspT107I	GGYRCC	2 cut(s)	994, 1036
BspTNI	GGTCTC	1 cut(s)	754
BsrGI	TGTACA	1 cut(s)	31
BsrI	ACTGG	5 cut(s)	406, 433, 806, 928, 1142
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	3 cut(s)	94, 100, 239
BssT1I	CCWWGG	1 cut(s)	513
Bst4CI	ACNGT	2 cut(s)	1122, 1149
Bst6I	CTCTTC	3 cut(s)	63, 252, 500
BstAUI	TGTACA	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	534
BstDEI	CTNAG	8 cut(s)	43, 501, 564, 579, 765, 896, 933, 1236
BstDSI	CCRYGG	1 cut(s)	513
BstENI	CCTNNNNNAGG	2 cut(s)	189, 1177
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	3 cut(s)	97, 103, 242
BstMAI	GTCTC	3 cut(s)	742, 754, 899
BstMBI	GATC	3 cut(s)	94, 100, 239
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 1108
BstNSI	RCATGY	2 cut(s)	38, 894
BstSFI	CTRYAG	1 cut(s)	534
BstV1I	GCAGC	3 cut(s)	810, 982, 1024
BstV2I	GAAGAC	1 cut(s)	566
BstX2I	RGATCY	1 cut(s)	94
BstXI	CCANNNNNNTGG	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	94
BsuRI	GGCC	9 cut(s)	120, 214, 388, 406, 433, 475, 532, 724, 876
BtgI	CCRYGG	1 cut(s)	513
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	2 cut(s)	491, 558
BveI	ACCTGC	1 cut(s)	779
Cac8I	GCNNGC	1 cut(s)	534
CaiI	CAGNNNCTG	1 cut(s)	1091
Cfr13I	GGNCC	7 cut(s)	182, 212, 386, 404, 431, 473, 510
Csp6I	GTAC	2 cut(s)	32, 682
CviAII	CATG	7 cut(s)	35, 263, 470, 514, 679, 891, 944
CviQI	GTAC	2 cut(s)	32, 682
DdeI	CTNAG	8 cut(s)	43, 501, 564, 579, 765, 896, 933, 1236
DpnI	GATC	3 cut(s)	96, 102, 241
DpnII	GATC	3 cut(s)	94, 100, 239
EaeI	YGGCCR	1 cut(s)	118
Eam1104I	CTCTTC	3 cut(s)	63, 252, 500
EarI	CTCTTC	3 cut(s)	63, 252, 500
Eco130I	CCWWGG	1 cut(s)	513
Eco147I	AGGCCT	2 cut(s)	532, 724
Eco31I	GGTCTC	1 cut(s)	754
Eco47I	GGWCC	2 cut(s)	182, 510
Eco57I	CTGAAG	2 cut(s)	87, 714
EcoNI	CCTNNNNNAGG	2 cut(s)	189, 1177
EcoT14I	CCWWGG	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	513
FaeI	CATG	7 cut(s)	38, 266, 473, 517, 682, 894, 947
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	7 cut(s)	34, 262, 469, 513, 678, 890, 943
FauNDI	CATATG	1 cut(s)	667
Fnu4HI	GCNGC	3 cut(s)	824, 971, 1013
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	3 cut(s)	824, 971, 1013
FspBI	CTAG	6 cut(s)	362, 438, 447, 624, 774, 1179
GluI	GCNGC	3 cut(s)	824, 971, 1013
HaeIII	GGCC	9 cut(s)	120, 214, 388, 406, 433, 475, 532, 724, 876
Hin1II	CATG	7 cut(s)	38, 266, 473, 517, 682, 894, 947
HinfI	GANTC	3 cut(s)	1094, 1153, 1234
HphI	GGTGA	2 cut(s)	314, 803
Hpy166II	GTNNAC	3 cut(s)	63, 1125, 1191
Hpy188I	TCNGA	6 cut(s)	280, 658, 934, 1093, 1239, 1247
Hpy188III	TCNNGA	5 cut(s)	89, 98, 167, 185, 1031
Hpy8I	GTNNAC	3 cut(s)	63, 1125, 1191
HpyAV	CCTTC	3 cut(s)	49, 167, 173
HpyCH4III	ACNGT	2 cut(s)	1122, 1149
HpyCH4IV	ACGT	2 cut(s)	412, 1202
HpyCH4V	TGCA	9 cut(s)	308, 482, 536, 700, 970, 1012, 1054, 1111, 1217
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 1108
HpyF3I	CTNAG	8 cut(s)	43, 501, 564, 579, 765, 896, 933, 1236
HpySE526I	ACGT	2 cut(s)	412, 1202
Hsp92II	CATG	7 cut(s)	38, 266, 473, 517, 682, 894, 947
Kzo9I	GATC	3 cut(s)	94, 100, 239
LguI	GCTCTTC	1 cut(s)	252
LmnI	GCTCC	2 cut(s)	916, 1165
Lsp1109I	GCAGC	3 cut(s)	810, 982, 1024
LweI	GCATC	4 cut(s)	10, 295, 867, 1097
MaeI	CTAG	6 cut(s)	362, 438, 447, 624, 774, 1179
MaeII	ACGT	2 cut(s)	412, 1202
MaeIII	GTNAC	2 cut(s)	487, 1113
MalI	GATC	3 cut(s)	96, 102, 241
MboI	GATC	3 cut(s)	94, 100, 239
MflI	RGATCY	1 cut(s)	94
MlsI	TGGCCA	1 cut(s)	120
MluCI	AATT	2 cut(s)	74, 372
MluNI	TGGCCA	1 cut(s)	120
MlyI	GAGTC	2 cut(s)	1162, 1228
MmeI	TCCRAC	2 cut(s)	400, 790
Mox20I	TGGCCA	1 cut(s)	120
MroXI	GAANNNNTTC	1 cut(s)	1080
MscI	TGGCCA	1 cut(s)	120
MseI	TTAA	3 cut(s)	291, 815, 849
Msp20I	TGGCCA	1 cut(s)	120
Mva1269I	GAATGC	1 cut(s)	1080
MwoI	GCNNNNNNNGC	2 cut(s)	117, 1108
NcoI	CCATGG	1 cut(s)	513
NdeI	CATATG	1 cut(s)	667
NdeII	GATC	3 cut(s)	94, 100, 239
NlaIII	CATG	7 cut(s)	38, 266, 473, 517, 682, 894, 947
NlaIV	GGNNCC	4 cut(s)	801, 912, 996, 1038
NmuCI	GTSAC	2 cut(s)	487, 1113
NspI	RCATGY	2 cut(s)	38, 894
PaqCI	CACCTGC	1 cut(s)	779
PceI	AGGCCT	2 cut(s)	532, 724
PciI	ACATGT	2 cut(s)	34, 890
PciSI	GCTCTTC	1 cut(s)	252
PctI	GAATGC	1 cut(s)	1080
PdmI	GAANNNNTTC	1 cut(s)	1080
PfeI	GAWTC	1 cut(s)	1094
PflMI	CCANNNNNTGG	2 cut(s)	413, 809
PkrI	GCNGC	3 cut(s)	825, 972, 1014
PleI	GAGTC	2 cut(s)	1161, 1228
PpsI	GAGTC	2 cut(s)	1161, 1228
PscI	ACATGT	2 cut(s)	34, 890
PsiI	TTATAA	1 cut(s)	716
PspN4I	GGNNCC	4 cut(s)	801, 912, 996, 1038
PspPI	GGNCC	7 cut(s)	182, 212, 386, 404, 431, 473, 510
PstI	CTGCAG	1 cut(s)	538
PstNI	CAGNNNCTG	1 cut(s)	1091
PsuI	RGATCY	1 cut(s)	94
RsaI	GTAC	2 cut(s)	33, 683
RsaNI	GTAC	2 cut(s)	32, 682
SapI	GCTCTTC	1 cut(s)	252
SaqAI	TTAA	3 cut(s)	291, 815, 849
SatI	GCNGC	3 cut(s)	824, 971, 1013
Sau3AI	GATC	3 cut(s)	94, 100, 239
Sau96I	GGNCC	7 cut(s)	182, 212, 386, 404, 431, 473, 510
SchI	GAGTC	2 cut(s)	1162, 1228
SfaNI	GCATC	4 cut(s)	10, 295, 867, 1097
SfcI	CTRYAG	1 cut(s)	534
SinI	GGWCC	2 cut(s)	182, 510
SmlI	CTYRAG	2 cut(s)	843, 1029
SmoI	CTYRAG	2 cut(s)	843, 1029
Sse9I	AATT	2 cut(s)	74, 372
SseBI	AGGCCT	2 cut(s)	532, 724
SspMI	CTAG	6 cut(s)	362, 438, 447, 624, 774, 1179
StuI	AGGCCT	2 cut(s)	532, 724
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	2 cut(s)	1122, 1149
TaiI	ACGT	2 cut(s)	415, 1205
TaqI	TCGA	3 cut(s)	159, 458, 540
TasI	AATT	2 cut(s)	74, 372
TatI	WGTACW	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	1094
Tru1I	TTAA	3 cut(s)	291, 815, 849
Tru9I	TTAA	3 cut(s)	291, 815, 849
TscAI	CASTG	2 cut(s)	498, 558
TseFI	GTSAC	2 cut(s)	487, 1113
TseI	GCWGC	3 cut(s)	823, 970, 1012
Tsp45I	GTSAC	2 cut(s)	487, 1113
TspDTI	ATGAA	3 cut(s)	103, 186, 267
TspRI	CASTG	2 cut(s)	498, 558
Van91I	CCANNNNNTGG	2 cut(s)	413, 809
VpaK11BI	GGWCC	2 cut(s)	182, 510
XagI	CCTNNNNNAGG	2 cut(s)	189, 1177
XceI	RCATGY	2 cut(s)	38, 894
XmnI	GAANNNNTTC	1 cut(s)	1080
XspI	CTAG	6 cut(s)	362, 438, 447, 624, 774, 1179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.