Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0014869

Physical Location & Seq

Genomic Coordinates Forward (+)

34756100 .. 34756749

Gene Structure 650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013640

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCTGGAAGTGGGCATTAAGGCCCACAAGATGGTGGTGGACTCACAGACTCAAGAGGTCACCTCGACTGAGAAGGTGGTGGTCCTGGAGATGCCTCACCATTCTCATTTTGAACGTGCTTTCGAGAATTTGGGGACGGGCCTTAATGAAATCTTTCTGGCTGCAACCCAGCCATCGCCTCACGAGTTGCGCTTGCAAAGTAAGGTCGAGGCCCTGCGTCATGATCTCACAGAGAGGAAGAAACAACTTGAGGATGACGATCGCAGCATGGCAAAGGCGGAGGCGGATGTCCTTGTCCTTGACATTAGAGGCAAGCTAGACGTCACCTTTGCGCGGGATGTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

13.02

Weight (kDa)

5.46

Isoelectric Point (pI)

42.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014869)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000013606 RLG00000013640 RLG00000022557
rosa_multiflora	Rmu_sc0000361.1_g000046 Rmu_sc0001423.1_g000003 Rmu_sc0001561.1_g000015 Rmu_sc0001803.1_g000027 Rmu_sc0005010.1_g000005 Rmu_sc0006111.1_g000008 Rmu_sc0008266.1_g000002 Rmu_sc0018980.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131880
rosa_rugosa	Rorug05G0283400
rosa_samantha	Rh2BG242900 Rh2BG415500 Rh6DG220600 Rh7CG085000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	324
AccB7I	CCANNNNNTGG	1 cut(s)	31
AccII	CGCG	1 cut(s)	334
AciI	CCGC	3 cut(s)	278, 284, 334
AcsI	RAATTY	1 cut(s)	127
AcyI	GRCGYC	1 cut(s)	321
AfiI	CCNNNNNNNGG	2 cut(s)	31, 333
AgsI	TTSAA	1 cut(s)	113
AjnI	CCWGG	1 cut(s)	84
AluBI	AGCT	1 cut(s)	316
AluI	AGCT	1 cut(s)	316
AoxI	GGCC	3 cut(s)	21, 139, 210
ApeKI	GCWGC	2 cut(s)	161, 264
ApoI	RAATTY	1 cut(s)	127
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
Asp700I	GAANNNNTTC	1 cut(s)	153
AspLEI	GCGC	2 cut(s)	192, 334
AspS9I	GGNCC	4 cut(s)	22, 82, 139, 211
AsuHPI	GGTGA	3 cut(s)	52, 89, 316
AvaII	GGWCC	1 cut(s)	82
BauI	CACGAG	1 cut(s)	182
BbvI	GCAGC	2 cut(s)	148, 276
BccI	CCATC	2 cut(s)	25, 181
BciT130I	CCWGG	1 cut(s)	86
BfaI	CTAG	1 cut(s)	317
BisI	GCNGC	2 cut(s)	162, 265
BlsI	GCNGC	2 cut(s)	163, 266
Bme1390I	CCNGG	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	4 cut(s)	22, 82, 139, 211
BmrFI	CCNGG	1 cut(s)	86
BmsI	GCATC	1 cut(s)	81
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
BpmI	CTGGAG	1 cut(s)	107
BpuEI	CTTGAG	2 cut(s)	36, 269
BsaBI	GATNNNNATC	1 cut(s)	258
BsaHI	GRCGYC	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 333
Bse8I	GATNNNNATC	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	86
BseGI	GGATG	3 cut(s)	259, 292, 343
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	2 cut(s)	31, 333
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	148, 276
BseYI	CCCAGC	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	334
Bsh1285I	CGRYCG	1 cut(s)	262
BshFI	GGCC	3 cut(s)	23, 141, 212
BsiEI	CGRYCG	1 cut(s)	262
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	2 cut(s)	31, 333
BsmFI	GGGAC	1 cut(s)	148
BsnI	GGCC	3 cut(s)	23, 141, 212
Bsp143I	GATC	2 cut(s)	223, 259
BspACI	CCGC	3 cut(s)	278, 284, 334
BspANI	GGCC	3 cut(s)	23, 141, 212
BspCNI	CTCAG	1 cut(s)	61
BspFNI	CGCG	1 cut(s)	334
BspHI	TCATGA	1 cut(s)	220
BssMI	GATC	2 cut(s)	223, 259
BssNI	GRCGYC	1 cut(s)	321
BssSI	CACGAG	1 cut(s)	182
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	1 cut(s)	86
BstACI	GRCGYC	1 cut(s)	321
BstC8I	GCNNGC	2 cut(s)	194, 314
BstDEI	CTNAG	1 cut(s)	69
BstEII	GGTNACC	1 cut(s)	58
BstF5I	GGATG	3 cut(s)	259, 292, 343
BstFNI	CGCG	1 cut(s)	334
BstHHI	GCGC	2 cut(s)	192, 334
BstKTI	GATC	2 cut(s)	226, 262
BstMBI	GATC	2 cut(s)	223, 259
BstMCI	CGRYCG	1 cut(s)	262
BstNI	CCWGG	1 cut(s)	86
BstPI	GGTNACC	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	84
BstUI	CGCG	1 cut(s)	334
BstV1I	GCAGC	2 cut(s)	148, 276
BsuRI	GGCC	3 cut(s)	23, 141, 212
BtgZI	GCGATG	1 cut(s)	159
BtsCI	GGATG	3 cut(s)	259, 292, 343
Cac8I	GCNNGC	2 cut(s)	194, 314
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	2 cut(s)	192, 334
Cfr13I	GGNCC	4 cut(s)	22, 82, 139, 211
CseI	GACGC	1 cut(s)	206
CviAII	CATG	2 cut(s)	221, 268
CviJI	RGCY	6 cut(s)	23, 141, 161, 172, 212, 316
CviKI_1	RGCY	6 cut(s)	23, 141, 161, 172, 212, 316
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	2 cut(s)	225, 261
DpnII	GATC	2 cut(s)	223, 259
EciI	GGCGGA	2 cut(s)	293, 299
Eco47I	GGWCC	1 cut(s)	82
Eco91I	GGTNACC	1 cut(s)	58
EcoO109I	RGGNCCY	1 cut(s)	211
EcoO65I	GGTNACC	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	84
FaeI	CATG	2 cut(s)	224, 271
FaiI	YATR	2 cut(s)	222, 269
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	2 cut(s)	220, 267
FauI	CCCGC	1 cut(s)	327
Fnu4HI	GCNGC	2 cut(s)	162, 265
FokI	GGATG	2 cut(s)	266, 299
Fsp4HI	GCNGC	2 cut(s)	162, 265
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	2 cut(s)	191, 333
GluI	GCNGC	2 cut(s)	162, 265
GsaI	CCCAGC	1 cut(s)	172
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	3 cut(s)	23, 141, 212
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	2 cut(s)	192, 334
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	2 cut(s)	224, 271
Hin6I	GCGC	2 cut(s)	190, 332
HinP1I	GCGC	2 cut(s)	190, 332
HinfI	GANTC	2 cut(s)	41, 49
HphI	GGTGA	3 cut(s)	52, 89, 316
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188III	TCNNGA	4 cut(s)	53, 124, 182, 221
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	1 cut(s)	67
HpyCH4IV	ACGT	2 cut(s)	115, 321
HpyCH4V	TGCA	2 cut(s)	164, 196
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	2 cut(s)	115, 321
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	2 cut(s)	224, 271
HspAI	GCGC	2 cut(s)	190, 332
Kzo9I	GATC	2 cut(s)	223, 259
LpnPI	CCDG	5 cut(s)	71, 98, 143, 182, 227
Lsp1109I	GCAGC	2 cut(s)	148, 276
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	2 cut(s)	115, 321
MaeIII	GTNAC	2 cut(s)	58, 322
MalI	GATC	2 cut(s)	225, 261
MboI	GATC	2 cut(s)	223, 259
MboII	GAAGA	1 cut(s)	250
MluCI	AATT	1 cut(s)	127
MlyI	GAGTC	2 cut(s)	35, 43
MnlI	CCTC	9 cut(s)	49, 73, 105, 189, 202, 228, 244, 274, 302
MroXI	GAANNNNTTC	1 cut(s)	153
MseI	TTAA	2 cut(s)	18, 144
MspR9I	CCNGG	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	86
MvnI	CGCG	1 cut(s)	334
NdeII	GATC	2 cut(s)	223, 259
NlaIII	CATG	2 cut(s)	224, 271
NmuCI	GTSAC	2 cut(s)	58, 322
PagI	TCATGA	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	153
PflMI	CCANNNNNTGG	1 cut(s)	31
PfoI	TCCNGGA	1 cut(s)	84
PkrI	GCNGC	2 cut(s)	163, 266
Ple19I	CGATCG	1 cut(s)	262
PleI	GAGTC	2 cut(s)	35, 43
PpsI	GAGTC	2 cut(s)	35, 43
Psp6I	CCWGG	1 cut(s)	84
PspEI	GGTNACC	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	84
PspPI	GGNCC	4 cut(s)	22, 82, 139, 211
PvuI	CGATCG	1 cut(s)	262
SaqAI	TTAA	2 cut(s)	18, 144
SatI	GCNGC	2 cut(s)	162, 265
Sau3AI	GATC	2 cut(s)	223, 259
Sau96I	GGNCC	4 cut(s)	22, 82, 139, 211
SchI	GAGTC	2 cut(s)	35, 43
ScrFI	CCNGG	1 cut(s)	86
SetI	ASST	8 cut(s)	60, 65, 78, 118, 207, 318, 324, 329
SfaNI	GCATC	1 cut(s)	81
SinI	GGWCC	1 cut(s)	82
SmlI	CTYRAG	2 cut(s)	51, 248
SmoI	CTYRAG	2 cut(s)	51, 248
Sse9I	AATT	1 cut(s)	127
SsiI	CCGC	3 cut(s)	278, 284, 334
SspMI	CTAG	1 cut(s)	317
StyD4I	CCNGG	1 cut(s)	84
TaiI	ACGT	2 cut(s)	118, 324
TaqI	TCGA	3 cut(s)	65, 123, 207
TasI	AATT	1 cut(s)	127
Tru1I	TTAA	2 cut(s)	18, 144
Tru9I	TTAA	2 cut(s)	18, 144
TseFI	GTSAC	2 cut(s)	58, 322
TseI	GCWGC	2 cut(s)	161, 264
Tsp45I	GTSAC	2 cut(s)	58, 322
TspDTI	ATGAA	1 cut(s)	162
Van91I	CCANNNNNTGG	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	82
XapI	RAATTY	1 cut(s)	127
XmnI	GAANNNNTTC	1 cut(s)	153
XspI	CTAG	1 cut(s)	317
ZraI	GACGTC	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.