Rroxscaffold_2G00131880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014869
Physical Location & Seq
Reverse (-)
68742005 .. 68743217
1213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00131880.1

Sequence Viewer

Length: 849 bp
ATGGGGCAGGCGGCGGTTCGCACTTTAGCGACCGTCGGGAGAAGGGTGCCGACAAAGTGGTTGGCACATGCCGAGGAAGCCATGGGGGGGGCTAAAGTCATAACTAGTGCCATGAGGGATGGTGGGTTAGAGAAGAGGCAGCTCAAGATTGATGCGGCGGAGGGCCCGCATCCTTCGAGGACATTCCACTTGCTCTCCACCACAGAAGAGAGCAAGGAAGGATACTCCGGTGCATCTCCTGTTTGGCCACCTAGAGGGGACATTACGCCCTACTCCCTACAGAATCCTCCTTCGCACAACCTTTGGGCACCGGCGGCATGTTTGAATGAAATGTTTTTGGCAAGGTCCAAGCCATCACCTACCGAGATCCTCTTGCGGGGTGAAGTTGACATTCTTCATCGTGATCCGGTGGAGAAGAAGGGACAACTTGAGGATACCGACCGCGGATTGGCGAAGGCGAAGATGGTCCGTTTGAAGGAGCAAATGGCGGTGGAGGCCAAGTGCATTGAGATTATGGAGCGCGAGGCCACCGCTAAAGGTGAAGAAATCAAGCGGCTTCGGGCCAAAGGTGCTCGGTTGCATAAGCGAAAAGGAAAAGGGTTGGTGTCGCCACCGTGGATGTCTTCGGCGGTCCCAAGAGATAAGGCTGCTCGGTTAATGTCGTCTTTCTGCTCCGAAGGTCCGCAAAGTGGGAGTGGCAAAGGGCATAGTGTGGATCCTCATCGCGCCCGATCCATTAGTGATGAGCCCGCAAAACACAACATTGAAGTTCCCACGCGGACACCAATAGTGACCTCCTCCGAGGCATCGAGGATGCAATTTGTTGCTCGCTCATACCCACGCCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

282

Amino Acids

30.98

Weight (kDa)

9.87

Isoelectric Point (pI)

62.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 46, 307
AccII CGCG 4 cut(s) 444, 522, 726, 778
AclWI GGATC 5 cut(s) 361, 398, 710, 723, 726
AcoI YGGCCR 1 cut(s) 245
AfiI CCNNNNNNNGG 6 cut(s) 87, 254, 376, 448, 475, 689
AgsI TTSAA 3 cut(s) 325, 475, 767
AhlI ACTAGT 1 cut(s) 104
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
Alw21I GWGCWC 1 cut(s) 574
AlwI GGATC 5 cut(s) 361, 398, 710, 723, 726
AoxI GGCC 5 cut(s) 163, 245, 495, 525, 561
ApaI GGGCCC 1 cut(s) 167
ApeKI GCWGC 2 cut(s) 139, 647
AspLEI GCGC 2 cut(s) 522, 728
AspS9I GGNCC 7 cut(s) 163, 164, 345, 466, 561, 631, 680
AsuHPI GGTGA 3 cut(s) 348, 392, 551
AvaII GGWCC 4 cut(s) 345, 466, 631, 680
BaeGI GKGCMC 2 cut(s) 167, 310
BaeI ACNNNNGTAYC 2 cut(s) 214, 247
BalI TGGCCA 1 cut(s) 247
BamHI GGATCC 1 cut(s) 715
BanI GGYRCC 2 cut(s) 46, 307
BanII GRGCYC 2 cut(s) 167, 750
BbsI GAAGAC 1 cut(s) 615
Bbv12I GWGCWC 1 cut(s) 574
BbvI GCAGC 2 cut(s) 151, 634
BccI CCATC 3 cut(s) 113, 361, 457
BciVI GTATCC 2 cut(s) 215, 427
BcuI ACTAGT 1 cut(s) 104
BfaI CTAG 2 cut(s) 105, 252
BfmI CTRYAG 1 cut(s) 278
BfuI GTATCC 2 cut(s) 215, 427
BisI GCNGC 6 cut(s) 12, 140, 156, 315, 554, 648
BlsI GCNGC 6 cut(s) 13, 141, 157, 316, 555, 649
Bme18I GGWCC 4 cut(s) 345, 466, 631, 680
BmgT120I GGNCC 7 cut(s) 163, 164, 345, 466, 561, 631, 680
BmiI GGNNCC 5 cut(s) 48, 165, 309, 633, 717
BmsI GCATC 5 cut(s) 142, 178, 242, 804, 815
BpiI GAAGAC 1 cut(s) 615
BpuEI CTTGAG 2 cut(s) 128, 449
BsaBI GATNNNNATC 1 cut(s) 720
BsaJI CCNNGG 5 cut(s) 72, 81, 442, 614, 801
BsaWI WCCGGW 2 cut(s) 227, 406
BsaXI ACNNNNNCTCC 4 cut(s) 179, 209, 485, 515
Bsc4I CCNNNNNNNGG 6 cut(s) 87, 254, 376, 448, 475, 689
Bse118I RCCGGY 1 cut(s) 310
Bse8I GATNNNNATC 1 cut(s) 720
BseDI CCNNGG 5 cut(s) 72, 81, 442, 614, 801
BseGI GGATG 4 cut(s) 124, 169, 624, 819
BseJI GATNNNNATC 1 cut(s) 720
BseLI CCNNNNNNNGG 6 cut(s) 87, 254, 376, 448, 475, 689
BseRI GAGGAG 1 cut(s) 787
BseSI GKGCMC 2 cut(s) 167, 310
BseXI GCAGC 2 cut(s) 151, 634
Bsh1236I CGCG 4 cut(s) 444, 522, 726, 778
Bsh1285I CGRYCG 2 cut(s) 33, 442
BshFI GGCC 5 cut(s) 165, 247, 497, 527, 563
BshNI GGYRCC 2 cut(s) 46, 307
BsiEI CGRYCG 2 cut(s) 33, 442
BsiHKAI GWGCWC 1 cut(s) 574
BsiSI CCGG 3 cut(s) 228, 311, 407
BslFI GGGAC 3 cut(s) 272, 435, 617
BslI CCNNNNNNNGG 6 cut(s) 87, 254, 376, 448, 475, 689
BsmFI GGGAC 3 cut(s) 272, 435, 617
BsnI GGCC 5 cut(s) 165, 247, 497, 527, 563
Bsp120I GGGCCC 1 cut(s) 163
Bsp1286I GDGCHC 4 cut(s) 167, 310, 574, 750
Bsp143I GATC 4 cut(s) 366, 403, 715, 731
Bsp19I CCATGG 1 cut(s) 81
BspANI GGCC 5 cut(s) 165, 247, 497, 527, 563
BspFNI CGCG 4 cut(s) 444, 522, 726, 778
BspLI GGNNCC 5 cut(s) 48, 165, 309, 633, 717
BspPI GGATC 5 cut(s) 361, 398, 710, 723, 726
BspT107I GGYRCC 2 cut(s) 46, 307
BsrFI RCCGGY 1 cut(s) 310
BssAI RCCGGY 1 cut(s) 310
BssECI CCNNGG 5 cut(s) 72, 81, 442, 614, 801
BssMI GATC 4 cut(s) 366, 403, 715, 731
BssT1I CCWWGG 1 cut(s) 81
Bst4CI ACNGT 2 cut(s) 34, 615
Bst6I CTCTTC 2 cut(s) 128, 201
BstC8I GCNNGC 4 cut(s) 9, 167, 750, 829
BstDSI CCRYGG 3 cut(s) 81, 442, 614
BstF5I GGATG 4 cut(s) 124, 169, 624, 819
BstFNI CGCG 4 cut(s) 444, 522, 726, 778
BstHHI GCGC 2 cut(s) 522, 728
BstKTI GATC 4 cut(s) 369, 406, 718, 734
BstMBI GATC 4 cut(s) 366, 403, 715, 731
BstMCI CGRYCG 2 cut(s) 33, 442
BstMWI GCNNNNNNNGC 4 cut(s) 77, 314, 494, 569
BstNSI RCATGY 2 cut(s) 71, 321
BstSFI CTRYAG 1 cut(s) 278
BstSLI GKGCMC 2 cut(s) 167, 310
BstUI CGCG 4 cut(s) 444, 522, 726, 778
BstV1I GCAGC 2 cut(s) 151, 634
BstV2I GAAGAC 1 cut(s) 615
BstX2I RGATCY 2 cut(s) 366, 715
BstYI RGATCY 2 cut(s) 366, 715
BsuI GTATCC 2 cut(s) 215, 427
BsuRI GGCC 5 cut(s) 165, 247, 497, 527, 563
BtgI CCRYGG 3 cut(s) 81, 442, 614
BtgZI GCGATG 1 cut(s) 707
BtsCI GGATG 4 cut(s) 124, 169, 624, 819
Cac8I GCNNGC 4 cut(s) 9, 167, 750, 829
CfoI GCGC 2 cut(s) 522, 728
Cfr10I RCCGGY 1 cut(s) 310
Cfr13I GGNCC 7 cut(s) 163, 164, 345, 466, 561, 631, 680
Cfr42I CCGCGG 1 cut(s) 445
CviAII CATG 4 cut(s) 68, 82, 112, 318
DpnI GATC 4 cut(s) 368, 405, 717, 733
DpnII GATC 4 cut(s) 366, 403, 715, 731
EaeI YGGCCR 1 cut(s) 245
Eam1104I CTCTTC 2 cut(s) 128, 201
EarI CTCTTC 2 cut(s) 128, 201
EciI GGCGGA 1 cut(s) 173
Eco130I CCWWGG 1 cut(s) 81
Eco24I GRGCYC 2 cut(s) 167, 750
Eco47I GGWCC 4 cut(s) 345, 466, 631, 680
EcoO109I RGGNCCY 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 81
EcoT38I GRGCYC 2 cut(s) 167, 750
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 4 cut(s) 71, 85, 115, 321
FaiI YATR 9 cut(s) 69, 83, 101, 113, 319, 515, 582, 708, 835
FaqI GGGAC 3 cut(s) 272, 435, 617
FatI CATG 4 cut(s) 67, 81, 111, 317
FauI CCCGC 3 cut(s) 174, 369, 757
Fnu4HI GCNGC 6 cut(s) 12, 140, 156, 315, 554, 648
FokI GGATG 4 cut(s) 131, 156, 631, 826
FriOI GRGCYC 2 cut(s) 167, 750
Fsp4HI GCNGC 6 cut(s) 12, 140, 156, 315, 554, 648
FspBI CTAG 2 cut(s) 105, 252
GlaI GCGC 2 cut(s) 521, 727
GluI GCNGC 6 cut(s) 12, 140, 156, 315, 554, 648
HaeIII GGCC 5 cut(s) 165, 247, 497, 527, 563
HapII CCGG 3 cut(s) 228, 311, 407
HhaI GCGC 2 cut(s) 522, 728
Hin1II CATG 4 cut(s) 71, 85, 115, 321
Hin6I GCGC 2 cut(s) 520, 726
HinP1I GCGC 2 cut(s) 520, 726
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 1 cut(s) 283
HpaII CCGG 3 cut(s) 228, 311, 407
HphI GGTGA 3 cut(s) 348, 392, 551
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 2 cut(s) 676, 802
Hpy188III TCNNGA 3 cut(s) 37, 145, 401
Hpy8I GTNNAC 1 cut(s) 388
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 8 cut(s) 36, 183, 212, 300, 412, 448, 469, 671
HpyCH4III ACNGT 2 cut(s) 34, 615
HpyCH4V TGCA 4 cut(s) 233, 504, 580, 817
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 314, 494, 569
Hsp92II CATG 4 cut(s) 71, 85, 115, 321
HspAI GCGC 2 cut(s) 520, 726
KspI CCGCGG 1 cut(s) 445
Kzo9I GATC 4 cut(s) 366, 403, 715, 731
LmnI GCTCC 3 cut(s) 478, 517, 677
LpnPI CCDG 4 cut(s) 241, 252, 324, 420
Lsp1109I GCAGC 2 cut(s) 151, 634
LweI GCATC 5 cut(s) 142, 178, 242, 804, 815
MaeI CTAG 2 cut(s) 105, 252
MaeIII GTNAC 1 cut(s) 790
MalI GATC 4 cut(s) 368, 405, 717, 733
MboI GATC 4 cut(s) 366, 403, 715, 731
MboII GAAGA 7 cut(s) 145, 218, 386, 427, 472, 554, 615
MflI RGATCY 2 cut(s) 366, 715
MhlI GDGCHC 4 cut(s) 167, 310, 574, 750
MlsI TGGCCA 1 cut(s) 247
MluCI AATT 1 cut(s) 818
MluNI TGGCCA 1 cut(s) 247
Mox20I TGGCCA 1 cut(s) 247
MscI TGGCCA 1 cut(s) 247
MseI TTAA 1 cut(s) 656
Msp20I TGGCCA 1 cut(s) 247
MspA1I CMGCKG 1 cut(s) 444
MspI CCGG 3 cut(s) 228, 311, 407
MvnI CGCG 4 cut(s) 444, 522, 726, 778
MwoI GCNNNNNNNGC 4 cut(s) 77, 314, 494, 569
NcoI CCATGG 1 cut(s) 81
NdeII GATC 4 cut(s) 366, 403, 715, 731
NlaIII CATG 4 cut(s) 71, 85, 115, 321
NlaIV GGNNCC 5 cut(s) 48, 165, 309, 633, 717
NmeAIII GCCGAG 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 790
NspI RCATGY 2 cut(s) 71, 321
PfeI GAWTC 1 cut(s) 283
PkrI GCNGC 6 cut(s) 13, 141, 157, 316, 555, 649
PspN4I GGNNCC 5 cut(s) 48, 165, 309, 633, 717
PspOMI GGGCCC 1 cut(s) 163
PspPI GGNCC 7 cut(s) 163, 164, 345, 466, 561, 631, 680
PsuI RGATCY 2 cut(s) 366, 715
SacII CCGCGG 1 cut(s) 445
SaqAI TTAA 1 cut(s) 656
SatI GCNGC 6 cut(s) 12, 140, 156, 315, 554, 648
Sau3AI GATC 4 cut(s) 366, 403, 715, 731
Sau96I GGNCC 7 cut(s) 163, 164, 345, 466, 561, 631, 680
SduI GDGCHC 4 cut(s) 167, 310, 574, 750
SetI ASST 9 cut(s) 144, 253, 303, 347, 361, 541, 571, 682, 797
SfaNI GCATC 5 cut(s) 142, 178, 242, 804, 815
SfcI CTRYAG 1 cut(s) 278
Sfr303I CCGCGG 1 cut(s) 445
SgrAI CRCCGGYG 1 cut(s) 310
SgrBI CCGCGG 1 cut(s) 445
SinI GGWCC 4 cut(s) 345, 466, 631, 680
SmlI CTYRAG 2 cut(s) 143, 428
SmoI CTYRAG 2 cut(s) 143, 428
SpeI ACTAGT 1 cut(s) 104
Sse9I AATT 1 cut(s) 818
SspMI CTAG 2 cut(s) 105, 252
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 2 cut(s) 34, 615
TaqI TCGA 2 cut(s) 176, 809
TasI AATT 1 cut(s) 818
TauI GCSGC 4 cut(s) 14, 158, 317, 556
TfiI GAWTC 1 cut(s) 283
Tru1I TTAA 1 cut(s) 656
Tru9I TTAA 1 cut(s) 656
TseFI GTSAC 1 cut(s) 790
TseI GCWGC 2 cut(s) 139, 647
Tsp45I GTSAC 1 cut(s) 790
TspDTI ATGAA 2 cut(s) 342, 386
TspGWI ACGGA 1 cut(s) 458
VpaK11BI GGWCC 4 cut(s) 345, 466, 631, 680
XceI RCATGY 2 cut(s) 71, 321
XspI CTAG 2 cut(s) 105, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.