Rmu_sc0008266.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008266.1
OG0014869
Physical Location & Seq
Forward (+)
6983 .. 8745
1763 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008266.1_g000002.1.cds

Sequence Viewer

Length: 723 bp
atggttcacgtcaagcgggacatgctgaaagttcagcggggggaggaggctgccgctcaacgtcagagagatgacagggtggagagtaataatgctgctagtatttctcatgatgatgaagaaagctctgatggggaagttagtgctgaagaggatttatcagcttccctgcttaacgtagctaagaccgctaaacaaaggcgagaaggagtcattttttccggaggggccgtgactcgtcccattgcccccaccttagacacagtggcggctggtggaaatcgatttggtaaccgccaagagagggcggcggaaaagataccaagcacggccgacacaagtggcgtgttgttgaggaggcggtggcagaatgatctggaggatgggtcagagcctacggatgagattcctcttgcccaccacctgcaaaagaaagtacgaaaagatgctccgcgatctcggtttttctctgcctttgggcagctggtggcagggttgaatgatatgtttctgggagcgacaaagccatctcccgttgaggttcagcttcaggaggaagttgatggtttgagccgtgagctggtgaagcagaggaaattgttttctaacacggaccatcggctggtgaaggcgaaggtggacctattggaggcccaagggaagttggatgtagcggtttcccaggatgttgagcggaataccaagatgtcgcagttggaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

26.51

Weight (kDa)

5.85

Isoelectric Point (pI)

47.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 432
Acc36I ACCTGC 1 cut(s) 432
AccB7I CCANNNNNTGG 1 cut(s) 622
AccBSI CCGCTC 2 cut(s) 56, 694
AccII CGCG 1 cut(s) 454
AccIII TCCGGA 1 cut(s) 221
AcoI YGGCCR 1 cut(s) 330
AcuI CTGAAG 2 cut(s) 168, 533
AfaI GTAC 1 cut(s) 438
AfiI CCNNNNNNNGG 4 cut(s) 304, 580, 622, 649
AgsI TTSAA 1 cut(s) 499
AjiI CACGTC 1 cut(s) 10
AjnI CCWGG 1 cut(s) 681
AluBI AGCT 6 cut(s) 126, 164, 182, 484, 547, 580
AluI AGCT 6 cut(s) 126, 164, 182, 484, 547, 580
Aor13HI TCCGGA 1 cut(s) 221
AoxI GGCC 3 cut(s) 228, 330, 651
ApeKI GCWGC 3 cut(s) 50, 95, 481
AspS9I GGNCC 4 cut(s) 228, 613, 640, 652
AsuHPI GGTGA 2 cut(s) 595, 637
AvaII GGWCC 2 cut(s) 613, 640
BbvI GCAGC 3 cut(s) 37, 82, 493
BccI CCATC 5 cut(s) 125, 377, 535, 557, 624
BceAI ACGGC 3 cut(s) 215, 345, 558
BciT130I CCWGG 1 cut(s) 683
BfaI CTAG 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 432
BisI GCNGC 6 cut(s) 51, 54, 96, 270, 309, 482
BlsI GCNGC 6 cut(s) 52, 55, 97, 271, 310, 483
Bme1390I CCNGG 1 cut(s) 683
Bme18I GGWCC 2 cut(s) 613, 640
BmgBI CACGTC 1 cut(s) 10
BmgT120I GGNCC 4 cut(s) 228, 613, 640, 652
BmiI GGNNCC 1 cut(s) 229
BmrFI CCNGG 1 cut(s) 683
BmsI GCATC 1 cut(s) 436
BpmI CTGGAG 1 cut(s) 398
Bsa29I ATCGAT 1 cut(s) 283
BsaJI CCNNGG 2 cut(s) 655, 681
BsaWI WCCGGW 1 cut(s) 221
BsaXI ACNNNNNCTCC 4 cut(s) 216, 246, 371, 401
Bsc4I CCNNNNNNNGG 4 cut(s) 304, 580, 622, 649
Bse3DI GCAATG 1 cut(s) 243
BseAI TCCGGA 1 cut(s) 221
BseBI CCWGG 1 cut(s) 683
BseCI ATCGAT 1 cut(s) 283
BseDI CCNNGG 2 cut(s) 655, 681
BseGI GGATG 4 cut(s) 388, 406, 673, 691
BseLI CCNNNNNNNGG 4 cut(s) 304, 580, 622, 649
BseMI GCAATG 1 cut(s) 243
BseRI GAGGAG 2 cut(s) 59, 370
BseX3I CGGCCG 1 cut(s) 330
BseXI GCAGC 3 cut(s) 37, 82, 493
Bsh1236I CGCG 1 cut(s) 454
Bsh1285I CGRYCG 1 cut(s) 333
BshFI GGCC 3 cut(s) 230, 332, 653
BshVI ATCGAT 1 cut(s) 283
BsiEI CGRYCG 1 cut(s) 333
BsiSI CCGG 1 cut(s) 222
BslFI GGGAC 2 cut(s) 32, 225
BslI CCNNNNNNNGG 4 cut(s) 304, 580, 622, 649
BsmFI GGGAC 2 cut(s) 32, 225
BsnI GGCC 3 cut(s) 230, 332, 653
Bsp13I TCCGGA 1 cut(s) 221
Bsp143I GATC 2 cut(s) 373, 455
BspANI GGCC 3 cut(s) 230, 332, 653
BspDI ATCGAT 1 cut(s) 283
BspEI TCCGGA 1 cut(s) 221
BspFNI CGCG 1 cut(s) 454
BspHI TCATGA 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 229
BspMI ACCTGC 1 cut(s) 432
BsrBI CCGCTC 2 cut(s) 56, 694
BsrDI GCAATG 1 cut(s) 243
BssECI CCNNGG 2 cut(s) 655, 681
BssMI GATC 2 cut(s) 373, 455
BssT1I CCWWGG 1 cut(s) 655
Bst2UI CCWGG 1 cut(s) 683
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 1 cut(s) 144
BstDEI CTNAG 2 cut(s) 183, 256
BstEII GGTNACC 1 cut(s) 290
BstENI CCTNNNNNAGG 1 cut(s) 647
BstF5I GGATG 4 cut(s) 388, 406, 673, 691
BstFNI CGCG 1 cut(s) 454
BstKTI GATC 2 cut(s) 376, 458
BstMBI GATC 2 cut(s) 373, 455
BstMCI CGRYCG 1 cut(s) 333
BstMWI GCNNNNNNNGC 3 cut(s) 22, 188, 586
BstNI CCWGG 1 cut(s) 683
BstNSI RCATGY 1 cut(s) 25
BstPI GGTNACC 1 cut(s) 290
BstSCI CCNGG 1 cut(s) 681
BstUI CGCG 1 cut(s) 454
BstV1I GCAGC 3 cut(s) 37, 82, 493
BstZI CGGCCG 1 cut(s) 330
Bsu15I ATCGAT 1 cut(s) 283
BsuRI GGCC 3 cut(s) 230, 332, 653
BsuTUI ATCGAT 1 cut(s) 283
BtrI CACGTC 1 cut(s) 10
BtsCI GGATG 4 cut(s) 388, 406, 673, 691
BtsIMutI CAGTG 1 cut(s) 270
BveI ACCTGC 1 cut(s) 432
CciI TCATGA 1 cut(s) 109
Cfr13I GGNCC 4 cut(s) 228, 613, 640, 652
ClaI ATCGAT 1 cut(s) 283
Csp6I GTAC 1 cut(s) 437
CviAII CATG 2 cut(s) 22, 110
CviQI GTAC 1 cut(s) 437
DdeI CTNAG 2 cut(s) 183, 256
DpnI GATC 2 cut(s) 375, 457
DpnII GATC 2 cut(s) 373, 455
EaeI YGGCCR 1 cut(s) 330
EagI CGGCCG 1 cut(s) 330
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
EciI GGCGGA 1 cut(s) 326
EclXI CGGCCG 1 cut(s) 330
Eco130I CCWWGG 1 cut(s) 655
Eco47I GGWCC 2 cut(s) 613, 640
Eco52I CGGCCG 1 cut(s) 330
Eco57I CTGAAG 2 cut(s) 168, 533
Eco91I GGTNACC 1 cut(s) 290
EcoNI CCTNNNNNAGG 1 cut(s) 647
EcoO65I GGTNACC 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 681
EcoT14I CCWWGG 1 cut(s) 655
ErhI CCWWGG 1 cut(s) 655
FaeI CATG 2 cut(s) 25, 113
FaiI YATR 3 cut(s) 23, 111, 506
FaqI GGGAC 2 cut(s) 32, 225
FatI CATG 2 cut(s) 21, 109
FauI CCCGC 2 cut(s) 9, 30
Fnu4HI GCNGC 6 cut(s) 51, 54, 96, 270, 309, 482
FokI GGATG 4 cut(s) 395, 413, 680, 698
Fsp4HI GCNGC 6 cut(s) 51, 54, 96, 270, 309, 482
FspBI CTAG 1 cut(s) 99
GluI GCNGC 6 cut(s) 51, 54, 96, 270, 309, 482
GsuI CTGGAG 1 cut(s) 398
HaeIII GGCC 3 cut(s) 230, 332, 653
HapII CCGG 1 cut(s) 222
Hin1II CATG 2 cut(s) 25, 113
HinfI GANTC 3 cut(s) 210, 235, 406
HpaII CCGG 1 cut(s) 222
HphI GGTGA 2 cut(s) 595, 637
Hpy166II GTNNAC 2 cut(s) 7, 640
Hpy188I TCNGA 3 cut(s) 66, 130, 391
Hpy188III TCNNGA 4 cut(s) 110, 222, 377, 551
Hpy8I GTNNAC 2 cut(s) 7, 640
HpyAV CCTTC 3 cut(s) 200, 622, 628
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4IV ACGT 3 cut(s) 9, 61, 177
HpyCH4V TGCA 1 cut(s) 427
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 188, 586
HpyF3I CTNAG 2 cut(s) 183, 256
HpySE526I ACGT 3 cut(s) 9, 61, 177
Hsp92II CATG 2 cut(s) 25, 113
Kpn2I TCCGGA 1 cut(s) 221
Kzo9I GATC 2 cut(s) 373, 455
LmnI GCTCC 2 cut(s) 454, 515
Lsp1109I GCAGC 3 cut(s) 37, 82, 493
LweI GCATC 1 cut(s) 436
MaeI CTAG 1 cut(s) 99
MaeII ACGT 3 cut(s) 9, 61, 177
MaeIII GTNAC 2 cut(s) 232, 290
MalI GATC 2 cut(s) 375, 457
MbiI CCGCTC 2 cut(s) 56, 694
MboI GATC 2 cut(s) 373, 455
MboII GAAGA 2 cut(s) 131, 161
MluCI AATT 1 cut(s) 596
MlyI GAGTC 2 cut(s) 219, 229
MmeI TCCRAC 2 cut(s) 645, 696
MroI TCCGGA 1 cut(s) 221
MseI TTAA 1 cut(s) 174
MslI CAYNNNNRTG 1 cut(s) 114
MspA1I CMGCKG 2 cut(s) 37, 484
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 1 cut(s) 683
MvaI CCWGG 1 cut(s) 683
MvnI CGCG 1 cut(s) 454
MwoI GCNNNNNNNGC 3 cut(s) 22, 188, 586
NdeII GATC 2 cut(s) 373, 455
NlaIII CATG 2 cut(s) 25, 113
NlaIV GGNNCC 1 cut(s) 229
NmuCI GTSAC 1 cut(s) 232
NspI RCATGY 1 cut(s) 25
PagI TCATGA 1 cut(s) 109
PaqCI CACCTGC 1 cut(s) 432
PfeI GAWTC 1 cut(s) 406
PflMI CCANNNNNTGG 1 cut(s) 622
PkrI GCNGC 6 cut(s) 52, 55, 97, 271, 310, 483
PleI GAGTC 2 cut(s) 218, 229
PpsI GAGTC 2 cut(s) 218, 229
Psp6I CCWGG 1 cut(s) 681
PspEI GGTNACC 1 cut(s) 290
PspGI CCWGG 1 cut(s) 681
PspN4I GGNNCC 1 cut(s) 229
PspPI GGNCC 4 cut(s) 228, 613, 640, 652
PvuII CAGCTG 1 cut(s) 484
RsaI GTAC 1 cut(s) 438
RsaNI GTAC 1 cut(s) 437
RseI CAYNNNNRTG 1 cut(s) 114
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 6 cut(s) 51, 54, 96, 270, 309, 482
Sau3AI GATC 2 cut(s) 373, 455
Sau96I GGNCC 4 cut(s) 228, 613, 640, 652
SchI GAGTC 2 cut(s) 219, 229
ScrFI CCNGG 1 cut(s) 683
SfaNI GCATC 1 cut(s) 436
SinI GGWCC 2 cut(s) 613, 640
SmiMI CAYNNNNRTG 1 cut(s) 114
Sse9I AATT 1 cut(s) 596
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 681
StyI CCWWGG 1 cut(s) 655
TaaI ACNGT 1 cut(s) 265
TaiI ACGT 3 cut(s) 12, 64, 180
TaqI TCGA 1 cut(s) 283
TasI AATT 1 cut(s) 596
TauI GCSGC 3 cut(s) 56, 272, 311
TfiI GAWTC 1 cut(s) 406
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 1 cut(s) 270
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 3 cut(s) 50, 95, 481
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 132
TspGWI ACGGA 2 cut(s) 413, 626
TspRI CASTG 1 cut(s) 270
Van91I CCANNNNNTGG 1 cut(s) 622
VpaK11BI GGWCC 2 cut(s) 613, 640
XagI CCTNNNNNAGG 1 cut(s) 647
XceI RCATGY 1 cut(s) 25
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.