Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0014869

Physical Location & Seq

Genomic Coordinates Forward (+)

32484085 .. 32486278

Gene Structure 2194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0283400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGACCAGGGCAGCACAAACATACATCACCACAGACTATTCTGCTCTTCTTGCTCTCAAATCTCATATCACCAATCACCCTCAAAACATGATCTTGACCAACTGGTCAACCCCCAGCTCCATTTGCAACTGGGTTGGCGTTACTTGTGGTGCACGGCATCATCGAGTTACTGGCTTGAATCTCTCTTACATGGGTTCAATCCCCACCAACATCTTCAACTTCTCTGCAGTGCAACTAATTGATCTTACATACAACCAACTATCAGGTAGCGTACCAAGAGAAATCGGGAACTTAACAATGCTGAAGATGATCAGCCTTGACTCTAGTAATCCCAGAGAAATTCCAAAGGAGATTGGCACTTTAGATCAGCTGGAAGAGATGAGTGTACAATCCAATGTCCTAGAAGGGCATCTTCCTGGGACTATCTTCAACATGTCTTCTTTGATTACATTGGCTCTAACAGGAAACAGCTTGAATGGTAGACTTCCAGACAATATATGTCAGCATCTTCCGAGTACTATACCAGATGAGATTGGTGATCTTCCAAAATTGGAGTTTTTGGCACTCCATTTAAACAATCTCAATGGCCTCATCCCATCCAGAGTCTTCAATATGCCCACAATACAAACACTTACACTTTCTCTTAATCACCTCTCGGGTAGTCTCCCTGCAAACATCGGGCTCGGGGTTCCAAACTTGCAAGAATTTTTTGTAGAAGAGAATGAACTCAGCGGACTAATCCCCAACTTCATATCTAATGCTTCCAAGATCACAATGCTAAACTTGGGCCTTAACTCATTTTCAGGGCTTACACCTAGCACAGTTTGTGCCTTAGAAAACCTTCAACGGCTTAACTTACAGAGAAACTATTTGACTATTGATACTTCTAGTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

298

Amino Acids

32.55

Weight (kDa)

5.55

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	11 - 49	6.7e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	77 - 287	9.2e-13	Leucine-rich repeat region
LRR_8	PF13855	231 - 291	3.9e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014869)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000013606 RLG00000013640 RLG00000022557
rosa_multiflora	Rmu_sc0000361.1_g000046 Rmu_sc0001423.1_g000003 Rmu_sc0001561.1_g000015 Rmu_sc0001803.1_g000027 Rmu_sc0005010.1_g000005 Rmu_sc0006111.1_g000008 Rmu_sc0008266.1_g000002 Rmu_sc0018980.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131880
rosa_rugosa	Rorug05G0283400
rosa_samantha	Rh2BG242900 Rh2BG415500 Rh6DG220600 Rh7CG085000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	103
AccI	GTMKAC	1 cut(s)	481
AciI	CCGC	1 cut(s)	732
AcsI	RAATTY	2 cut(s)	339, 704
AcuI	CTGAAG	1 cut(s)	323
AfaI	GTAC	3 cut(s)	273, 387, 517
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	7 cut(s)	178, 198, 217, 430, 475, 610, 845
AjnI	CCWGG	2 cut(s)	5, 415
AluBI	AGCT	3 cut(s)	117, 370, 471
AluI	AGCT	3 cut(s)	117, 370, 471
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	668
Alw44I	GTGCAC	1 cut(s)	150
Ama87I	CYCGRG	2 cut(s)	655, 683
AoxI	GGCC	2 cut(s)	586, 787
ApaLI	GTGCAC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	2 cut(s)	339, 704
Asp700I	GAANNNNTTC	1 cut(s)	840
AspS9I	GGNCC	1 cut(s)	787
AsuHPI	GGTGA	5 cut(s)	19, 61, 68, 548, 641
AvaI	CYCGRG	2 cut(s)	655, 683
BaeGI	GKGCMC	1 cut(s)	154
BanII	GRGCYC	1 cut(s)	684
BbsI	GAAGAC	2 cut(s)	429, 598
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	1 cut(s)	604
BceAI	ACGGC	2 cut(s)	170, 863
BciT130I	CCWGG	2 cut(s)	7, 417
BclI	TGATCA	1 cut(s)	309
BcoDI	GTCTC	1 cut(s)	668
BfaI	CTAG	4 cut(s)	324, 401, 816, 888
BfmI	CTRYAG	1 cut(s)	225
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
BmcAI	AGTACT	1 cut(s)	517
Bme1390I	CCNGG	2 cut(s)	7, 417
BmeT110I	CYCGRG	2 cut(s)	655, 683
BmgT120I	GGNCC	1 cut(s)	787
BmiI	GGNNCC	1 cut(s)	690
BmrFI	CCNGG	2 cut(s)	7, 417
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	3 cut(s)	166, 418, 514
BmuI	ACTGGG	1 cut(s)	139
BpiI	GAAGAC	2 cut(s)	429, 598
BsaJI	CCNNGG	2 cut(s)	6, 416
Bse1I	ACTGG	3 cut(s)	107, 134, 175
BseBI	CCWGG	2 cut(s)	7, 417
BseDI	CCNNGG	2 cut(s)	6, 416
BseGI	GGATG	2 cut(s)	591, 596
BseMII	CTCAG	1 cut(s)	742
BseNI	ACTGG	3 cut(s)	107, 134, 175
BseSI	GKGCMC	1 cut(s)	154
BseXI	GCAGC	1 cut(s)	23
BseYI	CCCAGC	1 cut(s)	113
BshFI	GGCC	2 cut(s)	588, 789
BsiHKAI	GWGCWC	1 cut(s)	154
BsiHKCI	CYCGRG	2 cut(s)	655, 683
BslFI	GGGAC	1 cut(s)	433
BsmAI	GTCTC	1 cut(s)	668
BsmFI	GGGAC	1 cut(s)	433
BsnI	GGCC	2 cut(s)	588, 789
BsoBI	CYCGRG	2 cut(s)	655, 683
Bsp1286I	GDGCHC	2 cut(s)	154, 684
Bsp1407I	TGTACA	1 cut(s)	385
Bsp143I	GATC	6 cut(s)	90, 241, 309, 364, 538, 768
BspACI	CCGC	1 cut(s)	732
BspANI	GGCC	2 cut(s)	588, 789
BspCNI	CTCAG	1 cut(s)	741
BspLI	GGNNCC	1 cut(s)	690
BspMAI	CTGCAG	1 cut(s)	229
BspQI	GCTCTTC	1 cut(s)	51
BsrGI	TGTACA	1 cut(s)	385
BsrI	ACTGG	3 cut(s)	107, 134, 175
BssECI	CCNNGG	2 cut(s)	6, 416
BssMI	GATC	6 cut(s)	90, 241, 309, 364, 538, 768
Bst2UI	CCWGG	2 cut(s)	7, 417
Bst4CI	ACNGT	1 cut(s)	823
Bst6I	CTCTTC	3 cut(s)	51, 369, 711
BstAUI	TGTACA	1 cut(s)	385
BstDEI	CTNAG	2 cut(s)	728, 832
BstF5I	GGATG	2 cut(s)	591, 596
BstKTI	GATC	6 cut(s)	93, 244, 312, 367, 541, 771
BstMAI	GTCTC	1 cut(s)	668
BstMBI	GATC	6 cut(s)	90, 241, 309, 364, 538, 768
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 123
BstNI	CCWGG	2 cut(s)	7, 417
BstNSI	RCATGY	1 cut(s)	436
BstSCI	CCNGG	2 cut(s)	5, 415
BstSFI	CTRYAG	1 cut(s)	225
BstSLI	GKGCMC	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	23
BstV2I	GAAGAC	2 cut(s)	429, 598
BsuRI	GGCC	2 cut(s)	588, 789
BtsCI	GGATG	2 cut(s)	591, 596
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	787
Csp6I	GTAC	3 cut(s)	272, 386, 516
CviAII	CATG	3 cut(s)	88, 190, 433
CviQI	GTAC	3 cut(s)	272, 386, 516
DdeI	CTNAG	2 cut(s)	728, 832
DpnI	GATC	6 cut(s)	92, 243, 311, 366, 540, 770
DpnII	GATC	6 cut(s)	90, 241, 309, 364, 538, 768
DraI	TTTAAA	1 cut(s)	573
DrdI	GACNNNNNNGTC	1 cut(s)	103
DseDI	GACNNNNNNGTC	1 cut(s)	103
Eam1104I	CTCTTC	3 cut(s)	51, 369, 711
EarI	CTCTTC	3 cut(s)	51, 369, 711
Eco24I	GRGCYC	1 cut(s)	684
Eco57I	CTGAAG	1 cut(s)	323
Eco88I	CYCGRG	2 cut(s)	655, 683
EcoRII	CCWGG	2 cut(s)	5, 415
EcoT38I	GRGCYC	1 cut(s)	684
FaeI	CATG	3 cut(s)	91, 193, 436
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	3 cut(s)	87, 189, 432
FbaI	TGATCA	1 cut(s)	309
FblI	GTMKAC	1 cut(s)	481
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	2 cut(s)	578, 583
FriOI	GRGCYC	1 cut(s)	684
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	4 cut(s)	324, 401, 816, 888
GluI	GCNGC	1 cut(s)	12
GsaI	CCCAGC	1 cut(s)	117
HaeIII	GGCC	2 cut(s)	588, 789
Hin1II	CATG	3 cut(s)	91, 193, 436
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HinfI	GANTC	3 cut(s)	178, 320, 603
HphI	GGTGA	5 cut(s)	19, 61, 68, 548, 641
Hpy166II	GTNNAC	4 cut(s)	108, 152, 386, 482
Hpy188I	TCNGA	1 cut(s)	513
Hpy188III	TCNNGA	4 cut(s)	94, 286, 488, 600
Hpy8I	GTNNAC	4 cut(s)	108, 152, 386, 482
HpyAV	CCTTC	2 cut(s)	398, 851
HpyCH4III	ACNGT	1 cut(s)	823
HpyCH4V	TGCA	6 cut(s)	126, 152, 227, 232, 671, 700
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 123
HpyF3I	CTNAG	2 cut(s)	728, 832
Hsp92II	CATG	3 cut(s)	91, 193, 436
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	6 cut(s)	90, 241, 309, 364, 538, 768
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	1 cut(s)	122
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	3 cut(s)	166, 418, 514
MaeI	CTAG	4 cut(s)	324, 401, 816, 888
MaeIII	GTNAC	2 cut(s)	139, 166
MalI	GATC	6 cut(s)	92, 243, 311, 366, 540, 770
MboI	GATC	6 cut(s)	90, 241, 309, 364, 538, 768
MhlI	GDGCHC	2 cut(s)	154, 684
MluCI	AATT	4 cut(s)	237, 339, 548, 704
MlyI	GAGTC	2 cut(s)	314, 612
MnlI	CCTC	3 cut(s)	90, 599, 662
MroXI	GAANNNNTTC	1 cut(s)	840
MseI	TTAA	5 cut(s)	293, 572, 645, 792, 852
MspA1I	CMGCKG	2 cut(s)	370, 732
MspR9I	CCNGG	2 cut(s)	7, 417
MvaI	CCWGG	2 cut(s)	7, 417
MwoI	GCNNNNNNNGC	2 cut(s)	50, 123
NdeII	GATC	6 cut(s)	90, 241, 309, 364, 538, 768
NlaIII	CATG	3 cut(s)	91, 193, 436
NlaIV	GGNNCC	1 cut(s)	690
NspI	RCATGY	1 cut(s)	436
PciI	ACATGT	1 cut(s)	432
PciSI	GCTCTTC	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	840
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	2 cut(s)	314, 611
PpsI	GAGTC	2 cut(s)	314, 611
PscI	ACATGT	1 cut(s)	432
Psp6I	CCWGG	2 cut(s)	5, 415
PspFI	CCCAGC	1 cut(s)	113
PspGI	CCWGG	2 cut(s)	5, 415
PspN4I	GGNNCC	1 cut(s)	690
PspPI	GGNCC	1 cut(s)	787
PstI	CTGCAG	1 cut(s)	229
PvuII	CAGCTG	1 cut(s)	370
RsaI	GTAC	3 cut(s)	273, 387, 517
RsaNI	GTAC	3 cut(s)	272, 386, 516
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	5 cut(s)	293, 572, 645, 792, 852
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	6 cut(s)	90, 241, 309, 364, 538, 768
Sau96I	GGNCC	1 cut(s)	787
ScaI	AGTACT	1 cut(s)	517
SchI	GAGTC	2 cut(s)	314, 612
ScrFI	CCNGG	2 cut(s)	7, 417
SduI	GDGCHC	2 cut(s)	154, 684
SetI	ASST	7 cut(s)	119, 268, 372, 473, 654, 817, 843
SfaNI	GCATC	3 cut(s)	166, 418, 514
SfcI	CTRYAG	1 cut(s)	225
Sse9I	AATT	4 cut(s)	237, 339, 548, 704
SsiI	CCGC	1 cut(s)	732
SspMI	CTAG	4 cut(s)	324, 401, 816, 888
StyD4I	CCNGG	2 cut(s)	5, 415
TaaI	ACNGT	1 cut(s)	823
TaqI	TCGA	1 cut(s)	163
TasI	AATT	4 cut(s)	237, 339, 548, 704
TatI	WGTACW	2 cut(s)	385, 515
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	5 cut(s)	293, 572, 645, 792, 852
Tru9I	TTAA	5 cut(s)	293, 572, 645, 792, 852
TscAI	CASTG	1 cut(s)	234
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	2 cut(s)	738, 739
TspRI	CASTG	1 cut(s)	234
VneI	GTGCAC	1 cut(s)	150
XapI	RAATTY	2 cut(s)	339, 704
XceI	RCATGY	1 cut(s)	436
XmiI	GTMKAC	1 cut(s)	481
XmnI	GAANNNNTTC	1 cut(s)	840
XspI	CTAG	4 cut(s)	324, 401, 816, 888
ZrmI	AGTACT	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.