Rmu_sc0006111.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006111.1
OG0014869
Physical Location & Seq
Reverse (-)
37678 .. 38924
1247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006111.1_g000008.1.cds

Sequence Viewer

Length: 579 bp
atgtggaagaccttgatggctctaaactcactatggaatttgttcgggtgtgggggtccaacaatggtggaggtgctccacttctatgaacttgtctatgttaatagaggtgaggggttacgctttgagctaaccagtgaagaacactaccacatagcgctatcgcttagttgttggcggaatcgaaacctactcaacatacgtctagtgacgatttgggacctcttggcggagttgaagttaactcattttcctgatcccatgcttgacaacggcaagagtcatgattccttccaaaaagaaatggacaaggctcagcttcaaaactaccttagcggcatttggatgaggttgaatgaactatttttggcgacctcaaggccatccccaactaaggttcgacttcaaggtgtggttaaggtccttagtcgcgatttggcggaggagaagaagcgacacagtgagacagatcgtcagctggcaaaggcagaggtagacttgatcgatgttaagggaaaactggatgccgccgttgcccgggacttggagcacaacaccaaggtgtctgagccgaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

22.16

Weight (kDa)

6.66

Isoelectric Point (pI)

40.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 495
AccII CGCG 1 cut(s) 432
AciI CCGC 5 cut(s) 178, 230, 336, 440, 528
AclWI GGATC 1 cut(s) 251
AcsI RAATTY 1 cut(s) 37
AfeI AGCGCT 1 cut(s) 159
AfiI CCNNNNNNNGG 4 cut(s) 229, 394, 537, 544
AgsI TTSAA 4 cut(s) 238, 323, 355, 407
AhdI GACNNNNNGTC 1 cut(s) 471
AleI CACNNNNGTG 1 cut(s) 560
AluBI AGCT 3 cut(s) 130, 319, 478
AluI AGCT 3 cut(s) 130, 319, 478
Alw21I GWGCWC 2 cut(s) 78, 552
Alw26I GTCTC 1 cut(s) 458
AlwI GGATC 1 cut(s) 251
Ama87I CYCGRG 1 cut(s) 537
Aor51HI AGCGCT 1 cut(s) 159
AoxI GGCC 1 cut(s) 380
ApoI RAATTY 1 cut(s) 37
Asp700I GAANNNNTTC 1 cut(s) 41
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 3 cut(s) 56, 220, 421
AsuC2I CCSGG 2 cut(s) 538, 539
AsuHPI GGTGA 1 cut(s) 122
AvaI CYCGRG 1 cut(s) 537
AvaII GGWCC 3 cut(s) 56, 220, 421
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 2 cut(s) 78, 552
BccI CCATC 2 cut(s) 10, 391
BceAI ACGGC 2 cut(s) 289, 515
BcnI CCSGG 2 cut(s) 538, 539
BcoDI GTCTC 1 cut(s) 458
BfaI CTAG 1 cut(s) 206
BfoI RGCGCY 1 cut(s) 161
BisI GCNGC 2 cut(s) 337, 528
BlpI GCTNAGC 1 cut(s) 315
BlsI GCNGC 2 cut(s) 338, 529
Bme1390I CCNGG 2 cut(s) 538, 539
Bme18I GGWCC 3 cut(s) 56, 220, 421
BmeRI GACNNNNNGTC 1 cut(s) 471
BmeT110I CYCGRG 1 cut(s) 537
BmgT120I GGNCC 3 cut(s) 56, 220, 421
BmiI GGNNCC 2 cut(s) 57, 221
BmrFI CCNGG 2 cut(s) 538, 539
BmsI GCATC 1 cut(s) 514
BpiI GAAGAC 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 332
Bpu1102I GCTNAGC 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 361
BpuMI CCSGG 2 cut(s) 538, 539
Bsa29I ATCGAT 1 cut(s) 504
BsaJI CCNNGG 2 cut(s) 537, 558
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 4 cut(s) 229, 394, 537, 544
Bse1I ACTGG 2 cut(s) 135, 525
BseCI ATCGAT 1 cut(s) 504
BseDI CCNNGG 2 cut(s) 537, 558
BseGI GGATG 3 cut(s) 351, 383, 529
BseLI CCNNNNNNNGG 4 cut(s) 229, 394, 537, 544
BseMII CTCAG 2 cut(s) 329, 558
BseNI ACTGG 2 cut(s) 135, 525
BseRI GAGGAG 1 cut(s) 458
Bsh1236I CGCG 1 cut(s) 432
BshFI GGCC 1 cut(s) 382
BshVI ATCGAT 1 cut(s) 504
BsiHKAI GWGCWC 2 cut(s) 78, 552
BsiHKCI CYCGRG 1 cut(s) 537
BsiSI CCGG 1 cut(s) 538
BslFI GGGAC 2 cut(s) 233, 554
BslI CCNNNNNNNGG 4 cut(s) 229, 394, 537, 544
BsmAI GTCTC 1 cut(s) 458
BsmFI GGGAC 2 cut(s) 233, 554
BsnI GGCC 1 cut(s) 382
BsoBI CYCGRG 1 cut(s) 537
Bsp1286I GDGCHC 2 cut(s) 78, 552
Bsp143I GATC 3 cut(s) 256, 469, 501
Bsp1720I GCTNAGC 1 cut(s) 315
Bsp68I TCGCGA 1 cut(s) 432
BspACI CCGC 5 cut(s) 178, 230, 336, 440, 528
BspANI GGCC 1 cut(s) 382
BspCNI CTCAG 2 cut(s) 328, 559
BspDI ATCGAT 1 cut(s) 504
BspFNI CGCG 1 cut(s) 432
BspHI TCATGA 1 cut(s) 283
BspLI GGNNCC 2 cut(s) 57, 221
BspPI GGATC 1 cut(s) 251
BsrI ACTGG 2 cut(s) 135, 525
BssECI CCNNGG 2 cut(s) 537, 558
BssMI GATC 3 cut(s) 256, 469, 501
BssT1I CCWWGG 1 cut(s) 558
Bst4CI ACNGT 1 cut(s) 461
BstC8I GCNNGC 1 cut(s) 480
BstDEI CTNAG 6 cut(s) 167, 315, 332, 393, 425, 567
BstF5I GGATG 3 cut(s) 351, 383, 529
BstFNI CGCG 1 cut(s) 432
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 3 cut(s) 259, 472, 504
BstMAI GTCTC 1 cut(s) 458
BstMBI GATC 3 cut(s) 256, 469, 501
BstMWI GCNNNNNNNGC 1 cut(s) 533
BstSCI CCNGG 2 cut(s) 536, 537
BstUI CGCG 1 cut(s) 432
BstV2I GAAGAC 1 cut(s) 14
Bsu15I ATCGAT 1 cut(s) 504
BsuRI GGCC 1 cut(s) 382
BsuTUI ATCGAT 1 cut(s) 504
BtsCI GGATG 3 cut(s) 351, 383, 529
BtsIMutI CAGTG 2 cut(s) 142, 466
BtuMI TCGCGA 1 cut(s) 432
Cac8I GCNNGC 1 cut(s) 480
CciI TCATGA 1 cut(s) 283
CfoI GCGC 1 cut(s) 160
Cfr13I GGNCC 3 cut(s) 56, 220, 421
Cfr9I CCCGGG 1 cut(s) 537
ClaI ATCGAT 1 cut(s) 504
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
CviAII CATG 2 cut(s) 262, 284
CviJI RGCY 7 cut(s) 20, 130, 314, 319, 382, 478, 571
CviKI_1 RGCY 7 cut(s) 20, 130, 314, 319, 382, 478, 571
DdeI CTNAG 6 cut(s) 167, 315, 332, 393, 425, 567
DpnI GATC 3 cut(s) 258, 471, 503
DpnII GATC 3 cut(s) 256, 469, 501
DriI GACNNNNNGTC 1 cut(s) 471
Eam1105I GACNNNNNGTC 1 cut(s) 471
EciI GGCGGA 3 cut(s) 193, 245, 455
Eco130I CCWWGG 1 cut(s) 558
Eco47I GGWCC 3 cut(s) 56, 220, 421
Eco47III AGCGCT 1 cut(s) 159
Eco88I CYCGRG 1 cut(s) 537
EcoO109I RGGNCCY 2 cut(s) 220, 421
EcoT14I CCWWGG 1 cut(s) 558
ErhI CCWWGG 1 cut(s) 558
FaeI CATG 2 cut(s) 265, 287
FaiI YATR 7 cut(s) 34, 87, 99, 155, 200, 263, 285
FaqI GGGAC 2 cut(s) 233, 554
FatI CATG 2 cut(s) 261, 283
FblI GTMKAC 1 cut(s) 495
Fnu4HI GCNGC 2 cut(s) 337, 528
FokI GGATG 3 cut(s) 358, 370, 536
Fsp4HI GCNGC 2 cut(s) 337, 528
FspBI CTAG 1 cut(s) 206
GlaI GCGC 1 cut(s) 159
GluI GCNGC 2 cut(s) 337, 528
HaeII RGCGCY 1 cut(s) 161
HaeIII GGCC 1 cut(s) 382
HapII CCGG 1 cut(s) 538
HhaI GCGC 1 cut(s) 160
Hin1II CATG 2 cut(s) 265, 287
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HinfI GANTC 3 cut(s) 181, 280, 287
HpaI GTTAAC 1 cut(s) 243
HpaII CCGG 1 cut(s) 538
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 2 cut(s) 243, 496
Hpy188I TCNGA 1 cut(s) 568
Hpy188III TCNNGA 3 cut(s) 254, 284, 431
Hpy8I GTNNAC 2 cut(s) 243, 496
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 1 cut(s) 461
HpyCH4IV ACGT 1 cut(s) 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 533
HpyF3I CTNAG 6 cut(s) 167, 315, 332, 393, 425, 567
HpySE526I ACGT 1 cut(s) 202
Hsp92II CATG 2 cut(s) 265, 287
HspAI GCGC 1 cut(s) 158
KspAI GTTAAC 1 cut(s) 243
Kzo9I GATC 3 cut(s) 256, 469, 501
LmnI GCTCC 2 cut(s) 81, 547
LpnPI CCDG 5 cut(s) 148, 267, 464, 506, 551
LweI GCATC 1 cut(s) 514
MaeI CTAG 1 cut(s) 206
MaeII ACGT 1 cut(s) 202
MaeIII GTNAC 2 cut(s) 117, 208
MalI GATC 3 cut(s) 258, 471, 503
MboI GATC 3 cut(s) 256, 469, 501
MboII GAAGA 3 cut(s) 19, 152, 460
MhlI GDGCHC 2 cut(s) 78, 552
MluCI AATT 2 cut(s) 37, 574
MlyI GAGTC 1 cut(s) 289
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 8 cut(s) 64, 101, 106, 233, 342, 385, 436, 484
MroXI GAANNNNTTC 1 cut(s) 41
MseI TTAA 4 cut(s) 102, 242, 417, 510
MslI CAYNNNNRTG 3 cut(s) 84, 344, 560
MspA1I CMGCKG 1 cut(s) 478
MspI CCGG 1 cut(s) 538
MspR9I CCNGG 2 cut(s) 538, 539
MvnI CGCG 1 cut(s) 432
MwoI GCNNNNNNNGC 1 cut(s) 533
NciI CCSGG 2 cut(s) 538, 539
NdeII GATC 3 cut(s) 256, 469, 501
NlaIII CATG 2 cut(s) 265, 287
NlaIV GGNNCC 2 cut(s) 57, 221
NmuCI GTSAC 1 cut(s) 208
NruI TCGCGA 1 cut(s) 432
OliI CACNNNNGTG 1 cut(s) 560
PagI TCATGA 1 cut(s) 283
PdmI GAANNNNTTC 1 cut(s) 41
PfeI GAWTC 2 cut(s) 181, 287
PkrI GCNGC 2 cut(s) 338, 529
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
PpuMI RGGWCCY 2 cut(s) 220, 421
Psp5II RGGWCCY 2 cut(s) 220, 421
PspN4I GGNNCC 2 cut(s) 57, 221
PspPI GGNCC 3 cut(s) 56, 220, 421
PspPPI RGGWCCY 2 cut(s) 220, 421
PvuII CAGCTG 1 cut(s) 478
RruI TCGCGA 1 cut(s) 432
RseI CAYNNNNRTG 3 cut(s) 84, 344, 560
SaqAI TTAA 4 cut(s) 102, 242, 417, 510
SatI GCNGC 2 cut(s) 337, 528
Sau3AI GATC 3 cut(s) 256, 469, 501
Sau96I GGNCC 3 cut(s) 56, 220, 421
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 2 cut(s) 538, 539
SduI GDGCHC 2 cut(s) 78, 552
SfaNI GCATC 1 cut(s) 514
SinI GGWCC 3 cut(s) 56, 220, 421
SmaI CCCGGG 1 cut(s) 539
SmiMI CAYNNNNRTG 3 cut(s) 84, 344, 560
SmlI CTYRAG 1 cut(s) 376
SmoI CTYRAG 1 cut(s) 376
Sse9I AATT 2 cut(s) 37, 574
SsiI CCGC 5 cut(s) 178, 230, 336, 440, 528
SspMI CTAG 1 cut(s) 206
StyD4I CCNGG 2 cut(s) 536, 537
StyI CCWWGG 1 cut(s) 558
TaaI ACNGT 1 cut(s) 461
TaiI ACGT 1 cut(s) 205
TaqI TCGA 3 cut(s) 184, 400, 504
TasI AATT 2 cut(s) 37, 574
TauI GCSGC 2 cut(s) 339, 530
TfiI GAWTC 2 cut(s) 181, 287
Tru1I TTAA 4 cut(s) 102, 242, 417, 510
Tru9I TTAA 4 cut(s) 102, 242, 417, 510
TscAI CASTG 2 cut(s) 142, 466
TseFI GTSAC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 2 cut(s) 102, 372
TspMI CCCGGG 1 cut(s) 537
TspRI CASTG 2 cut(s) 142, 466
VpaK11BI GGWCC 3 cut(s) 56, 220, 421
XapI RAATTY 1 cut(s) 37
XmaI CCCGGG 1 cut(s) 537
XmiI GTMKAC 1 cut(s) 495
XmnI GAANNNNTTC 1 cut(s) 41
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.