Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018980.1

Orthogroup ID

OG0014869

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 553

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018980.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 412 bp

ctggcgagagttctgccgcttagcaaacgtcttaaaaccagggccgacacaagtggcgtgttgttgaggaggcggtggcagaatgatcaggaggatgggtcagagcctacggatgagattcctcttgcccaccgcctgcaaaagaaagtacgaaaagatgctccgcgatctcggtttttctctgcctttgggcagctggtggcagggttgaatgatatgtttctgggagcgacaaagccatctcccgttgaggttcagcttcaggaggaagttgatggtttgagccgtgagctggtgaagcagaggaaactgttttctaacacggaccatcagctggtgaaggcgaaggtggacctattggaggcccaagggaagttggatgtagcggtttcccaggatgttgagcggaata

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.49

Weight (kDa)

9.57

Isoelectric Point (pI)

50.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014869)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000013606 RLG00000013640 RLG00000022557
rosa_multiflora	Rmu_sc0000361.1_g000046 Rmu_sc0001423.1_g000003 Rmu_sc0001561.1_g000015 Rmu_sc0001803.1_g000027 Rmu_sc0005010.1_g000005 Rmu_sc0006111.1_g000008 Rmu_sc0008266.1_g000002 Rmu_sc0018980.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131880
rosa_rugosa	Rorug05G0283400
rosa_samantha	Rh2BG242900 Rh2BG415500 Rh6DG220600 Rh7CG085000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	334
AccBSI	CCGCTC	1 cut(s)	406
AccII	CGCG	1 cut(s)	166
AciI	CCGC	6 cut(s)	17, 73, 133, 164, 386, 406
AcuI	CTGAAG	1 cut(s)	245
AfaI	GTAC	1 cut(s)	150
AfiI	CCNNNNNNNGG	3 cut(s)	292, 334, 361
AgsI	TTSAA	1 cut(s)	211
AjnI	CCWGG	2 cut(s)	38, 393
AluBI	AGCT	4 cut(s)	196, 259, 292, 334
AluI	AGCT	4 cut(s)	196, 259, 292, 334
AoxI	GGCC	2 cut(s)	42, 363
ApeKI	GCWGC	1 cut(s)	193
AspS9I	GGNCC	4 cut(s)	42, 325, 352, 364
AsuHPI	GGTGA	2 cut(s)	307, 349
AvaII	GGWCC	2 cut(s)	325, 352
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	4 cut(s)	89, 247, 269, 336
BceAI	ACGGC	1 cut(s)	270
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	2 cut(s)	40, 395
BclI	TGATCA	1 cut(s)	85
BisI	GCNGC	2 cut(s)	17, 194
BlpI	GCTNAGC	1 cut(s)	20
BlsI	GCNGC	2 cut(s)	18, 195
Bme1390I	CCNGG	2 cut(s)	40, 395
Bme18I	GGWCC	2 cut(s)	325, 352
BmgT120I	GGNCC	4 cut(s)	42, 325, 352, 364
BmrFI	CCNGG	2 cut(s)	40, 395
BmsI	GCATC	1 cut(s)	148
Bpu1102I	GCTNAGC	1 cut(s)	20
BsaJI	CCNNGG	3 cut(s)	39, 367, 393
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	3 cut(s)	292, 334, 361
BseBI	CCWGG	2 cut(s)	40, 395
BseDI	CCNNGG	3 cut(s)	39, 367, 393
BseGI	GGATG	4 cut(s)	100, 118, 385, 403
BseLI	CCNNNNNNNGG	3 cut(s)	292, 334, 361
BseRI	GAGGAG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	205
Bsh1236I	CGCG	1 cut(s)	166
BshFI	GGCC	2 cut(s)	44, 365
BslI	CCNNNNNNNGG	3 cut(s)	292, 334, 361
BsnI	GGCC	2 cut(s)	44, 365
Bsp143I	GATC	2 cut(s)	85, 167
Bsp1720I	GCTNAGC	1 cut(s)	20
BspACI	CCGC	6 cut(s)	17, 73, 133, 164, 386, 406
BspANI	GGCC	2 cut(s)	44, 365
BspFNI	CGCG	1 cut(s)	166
BsrBI	CCGCTC	1 cut(s)	406
BssECI	CCNNGG	3 cut(s)	39, 367, 393
BssMI	GATC	2 cut(s)	85, 167
BssT1I	CCWWGG	1 cut(s)	367
Bst2UI	CCWGG	2 cut(s)	40, 395
Bst4CI	ACNGT	1 cut(s)	312
BstC8I	GCNNGC	1 cut(s)	137
BstDEI	CTNAG	1 cut(s)	20
BstENI	CCTNNNNNAGG	1 cut(s)	359
BstF5I	GGATG	4 cut(s)	100, 118, 385, 403
BstFNI	CGCG	1 cut(s)	166
BstKTI	GATC	2 cut(s)	88, 170
BstMBI	GATC	2 cut(s)	85, 167
BstMWI	GCNNNNNNNGC	1 cut(s)	298
BstNI	CCWGG	2 cut(s)	40, 395
BstSCI	CCNGG	2 cut(s)	38, 393
BstUI	CGCG	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	205
BsuRI	GGCC	2 cut(s)	44, 365
BtsCI	GGATG	4 cut(s)	100, 118, 385, 403
Cac8I	GCNNGC	1 cut(s)	137
Cfr13I	GGNCC	4 cut(s)	42, 325, 352, 364
Csp6I	GTAC	1 cut(s)	149
CviJI	RGCY	9 cut(s)	44, 106, 196, 238, 259, 285, 292, 334, 365
CviKI_1	RGCY	9 cut(s)	44, 106, 196, 238, 259, 285, 292, 334, 365
CviQI	GTAC	1 cut(s)	149
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	2 cut(s)	87, 169
DpnII	GATC	2 cut(s)	85, 167
Eco130I	CCWWGG	1 cut(s)	367
Eco47I	GGWCC	2 cut(s)	325, 352
Eco57I	CTGAAG	1 cut(s)	245
EcoNI	CCTNNNNNAGG	1 cut(s)	359
EcoRII	CCWGG	2 cut(s)	38, 393
EcoT14I	CCWWGG	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	367
FaiI	YATR	1 cut(s)	218
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	2 cut(s)	17, 194
FokI	GGATG	3 cut(s)	107, 125, 392
Fsp4HI	GCNGC	2 cut(s)	17, 194
GluI	GCNGC	2 cut(s)	17, 194
HaeIII	GGCC	2 cut(s)	44, 365
HinfI	GANTC	1 cut(s)	118
HphI	GGTGA	2 cut(s)	307, 349
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	2 cut(s)	89, 263
Hpy8I	GTNNAC	1 cut(s)	352
HpyAV	CCTTC	2 cut(s)	334, 340
HpyCH4III	ACNGT	1 cut(s)	312
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	298
HpyF3I	CTNAG	1 cut(s)	20
HpySE526I	ACGT	1 cut(s)	28
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	85, 167
LmnI	GCTCC	2 cut(s)	166, 227
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	1 cut(s)	148
MaeII	ACGT	1 cut(s)	28
MalI	GATC	2 cut(s)	87, 169
MbiI	CCGCTC	1 cut(s)	406
MboI	GATC	2 cut(s)	85, 167
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	8 cut(s)	60, 63, 85, 132, 244, 259, 297, 355
MseI	TTAA	1 cut(s)	33
MspA1I	CMGCKG	2 cut(s)	196, 334
MspR9I	CCNGG	2 cut(s)	40, 395
MvaI	CCWGG	2 cut(s)	40, 395
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	298
NdeII	GATC	2 cut(s)	85, 167
PfeI	GAWTC	1 cut(s)	118
PflMI	CCANNNNNTGG	1 cut(s)	334
PkrI	GCNGC	2 cut(s)	18, 195
Psp6I	CCWGG	2 cut(s)	38, 393
PspGI	CCWGG	2 cut(s)	38, 393
PspPI	GGNCC	4 cut(s)	42, 325, 352, 364
PvuII	CAGCTG	2 cut(s)	196, 334
RsaI	GTAC	1 cut(s)	150
RsaNI	GTAC	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	2 cut(s)	17, 194
Sau3AI	GATC	2 cut(s)	85, 167
Sau96I	GGNCC	4 cut(s)	42, 325, 352, 364
ScrFI	CCNGG	2 cut(s)	40, 395
SetI	ASST	8 cut(s)	31, 198, 255, 261, 294, 336, 351, 357
SfaNI	GCATC	1 cut(s)	148
SinI	GGWCC	2 cut(s)	325, 352
SsiI	CCGC	6 cut(s)	17, 73, 133, 164, 386, 406
StyD4I	CCNGG	2 cut(s)	38, 393
StyI	CCWWGG	1 cut(s)	367
TaaI	ACNGT	1 cut(s)	312
TaiI	ACGT	1 cut(s)	31
TauI	GCSGC	1 cut(s)	19
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TseI	GCWGC	1 cut(s)	193
TspGWI	ACGGA	2 cut(s)	125, 338
Van91I	CCANNNNNTGG	1 cut(s)	334
VpaK11BI	GGWCC	2 cut(s)	325, 352
XagI	CCTNNNNNAGG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.