Rmu_sc0001803.1_g000027

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001803.1
OG0014869
Physical Location & Seq
Forward (+)
93360 .. 93950
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001803.1_g000027.1.cds

Sequence Viewer

Length: 396 bp
atgtcagagccagcaagggcagtgtatggcttgaaggagcaattagcaggcaaagtcaagcgcattgaattgatggagtgtgaggctgcagccaagggtgaggagatcaaacggctgcaggccaaaggggttcagctggcgaaggcggagaggaagaaaattagcgttgttggtgtcatcaactgggacgaggctacccagctgtcagcaccctctagtgctgctttaagtcagcaaggtgatggtgggaaaaatgtgggttcgcagggtgcccactctgtcagcgatgaatttgcccaacgtgttgaccttgcgcagcagcaaacaccaccgcgatcagaggagacaagccagcagtcggggctggatggtgatggtggtgctgcgaagaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

13.79

Weight (kDa)

5.88

Isoelectric Point (pI)

52.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 315
AccB1I GGYRCC 1 cut(s) 269
AccII CGCG 1 cut(s) 334
AciI CCGC 2 cut(s) 146, 332
AcsI RAATTY 1 cut(s) 290
AfiI CCNNNNNNNGG 1 cut(s) 358
AflIII ACRYGT 1 cut(s) 301
AgsI TTSAA 2 cut(s) 34, 68
AluBI AGCT 2 cut(s) 136, 202
AluI AGCT 2 cut(s) 136, 202
Alw26I GTCTC 1 cut(s) 338
AoxI GGCC 1 cut(s) 120
ApeKI GCWGC 7 cut(s) 86, 89, 115, 221, 316, 319, 383
ApoI RAATTY 1 cut(s) 290
AspLEI GCGC 2 cut(s) 63, 316
AsuHPI GGTGA 3 cut(s) 110, 251, 383
BaeGI GKGCMC 1 cut(s) 274
BanI GGYRCC 1 cut(s) 269
BbvI GCAGC 7 cut(s) 73, 101, 102, 208, 328, 331, 370
BccI CCATC 4 cut(s) 67, 236, 362, 368
BceAI ACGGC 1 cut(s) 128
BcgI CGANNNNNNTGC 2 cut(s) 275, 309
BcoDI GTCTC 1 cut(s) 338
BfaI CTAG 1 cut(s) 216
BfmI CTRYAG 2 cut(s) 87, 116
BisI GCNGC 7 cut(s) 87, 90, 116, 222, 317, 320, 384
BlsI GCNGC 7 cut(s) 88, 91, 117, 223, 318, 321, 385
BmiI GGNNCC 1 cut(s) 271
BmrI ACTGGG 1 cut(s) 193
BmuI ACTGGG 1 cut(s) 193
BsaJI CCNNGG 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 358
Bse1I ACTGG 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 1 cut(s) 373
BseLI CCNNNNNNNGG 1 cut(s) 358
BseNI ACTGG 1 cut(s) 188
BseRI GAGGAG 2 cut(s) 116, 356
BseSI GKGCMC 1 cut(s) 274
BseXI GCAGC 7 cut(s) 73, 101, 102, 208, 328, 331, 370
BseYI CCCAGC 1 cut(s) 198
Bsh1236I CGCG 1 cut(s) 334
BshFI GGCC 1 cut(s) 122
BshNI GGYRCC 1 cut(s) 269
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 1 cut(s) 358
BsmAI GTCTC 1 cut(s) 338
BsmFI GGGAC 1 cut(s) 200
BsnI GGCC 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 274
Bsp143I GATC 2 cut(s) 105, 335
BspACI CCGC 2 cut(s) 146, 332
BspANI GGCC 1 cut(s) 122
BspFNI CGCG 1 cut(s) 334
BspLI GGNNCC 1 cut(s) 271
BspMAI CTGCAG 2 cut(s) 91, 120
BspT107I GGYRCC 1 cut(s) 269
BsrI ACTGG 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 2 cut(s) 105, 335
BssT1I CCWWGG 1 cut(s) 93
BstC8I GCNNGC 5 cut(s) 12, 49, 120, 138, 353
BstF5I GGATG 1 cut(s) 373
BstFNI CGCG 1 cut(s) 334
BstHHI GCGC 2 cut(s) 63, 316
BstKTI GATC 2 cut(s) 108, 338
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 2 cut(s) 105, 335
BstMWI GCNNNNNNNGC 1 cut(s) 361
BstSFI CTRYAG 2 cut(s) 87, 116
BstSLI GKGCMC 1 cut(s) 274
BstUI CGCG 1 cut(s) 334
BstV1I GCAGC 7 cut(s) 73, 101, 102, 208, 328, 331, 370
BsuRI GGCC 1 cut(s) 122
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 1 cut(s) 373
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 5 cut(s) 12, 49, 120, 138, 353
CfoI GCGC 2 cut(s) 63, 316
DpnI GATC 2 cut(s) 107, 337
DpnII GATC 2 cut(s) 105, 335
EciI GGCGGA 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaiI YATR 1 cut(s) 27
FaqI GGGAC 1 cut(s) 200
Fnu4HI GCNGC 7 cut(s) 87, 90, 116, 222, 317, 320, 384
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 7 cut(s) 87, 90, 116, 222, 317, 320, 384
FspBI CTAG 1 cut(s) 216
FspI TGCGCA 1 cut(s) 315
GlaI GCGC 2 cut(s) 62, 315
GluI GCNGC 7 cut(s) 87, 90, 116, 222, 317, 320, 384
GsaI CCCAGC 1 cut(s) 202
HaeIII GGCC 1 cut(s) 122
HhaI GCGC 2 cut(s) 63, 316
Hin6I GCGC 2 cut(s) 61, 314
HinP1I GCGC 2 cut(s) 61, 314
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HphI GGTGA 3 cut(s) 110, 251, 383
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 2 cut(s) 7, 340
Hpy8I GTNNAC 1 cut(s) 307
HpyAV CCTTC 2 cut(s) 28, 136
HpyCH4IV ACGT 1 cut(s) 301
HpyCH4V TGCA 2 cut(s) 89, 118
HpyF10VI GCNNNNNNNGC 1 cut(s) 361
HpySE526I ACGT 1 cut(s) 301
HspAI GCGC 2 cut(s) 61, 314
Kzo9I GATC 2 cut(s) 105, 335
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 9 cut(s) 24, 33, 104, 122, 169, 212, 251, 350, 365
Lsp1109I GCAGC 7 cut(s) 73, 101, 102, 208, 328, 331, 370
MaeI CTAG 1 cut(s) 216
MaeII ACGT 1 cut(s) 301
MalI GATC 2 cut(s) 107, 337
MboI GATC 2 cut(s) 105, 335
MboII GAAGA 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 274
MluCI AATT 4 cut(s) 41, 68, 159, 290
MnlI CCTC 6 cut(s) 76, 94, 144, 184, 223, 334
MseI TTAA 1 cut(s) 227
MspA1I CMGCKG 2 cut(s) 136, 202
MvnI CGCG 1 cut(s) 334
MwoI GCNNNNNNNGC 1 cut(s) 361
NdeII GATC 2 cut(s) 105, 335
NlaIV GGNNCC 1 cut(s) 271
NsbI TGCGCA 1 cut(s) 315
PkrI GCNGC 7 cut(s) 88, 91, 117, 223, 318, 321, 385
PspFI CCCAGC 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 271
PstI CTGCAG 2 cut(s) 91, 120
PvuII CAGCTG 2 cut(s) 136, 202
SaqAI TTAA 1 cut(s) 227
SatI GCNGC 7 cut(s) 87, 90, 116, 222, 317, 320, 384
Sau3AI GATC 2 cut(s) 105, 335
SduI GDGCHC 1 cut(s) 274
SetI ASST 5 cut(s) 138, 204, 241, 304, 312
SfcI CTRYAG 2 cut(s) 87, 116
Sse9I AATT 4 cut(s) 41, 68, 159, 290
SsiI CCGC 2 cut(s) 146, 332
SspMI CTAG 1 cut(s) 216
StyI CCWWGG 1 cut(s) 93
TaiI ACGT 1 cut(s) 304
TasI AATT 4 cut(s) 41, 68, 159, 290
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TscAI CASTG 1 cut(s) 27
TseI GCWGC 7 cut(s) 86, 89, 115, 221, 316, 319, 383
TspDTI ATGAA 1 cut(s) 303
TspRI CASTG 1 cut(s) 27
XapI RAATTY 1 cut(s) 290
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.