Rmu_sc0000361.1_g000046

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000361.1
OG0014869
Physical Location & Seq
Reverse (-)
208780 .. 210034
1255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000361.1_g000046.1.cds

Sequence Viewer

Length: 924 bp
atgatgtctccaacaccgctcagtgacatgggccccagtagtcctatcctttggaagaagcgtcaaaacgatgtcgatgaaagtgagcaagaggacgatacagtgccgattggggtgcgccaacagcagaagaaagcgaggcagactccacaaacagagacagccgctgctagggaggtgctgctgagcagcttggcatttgggcacttgtccgttgggctacacgagctatttttggccgcatcaaagtcgtcgcctgcagagcagcagttgatagatgaaattgtgtgtcttcgacgggggttagaggagacgtccaagaaactggaggagactgagggcctctttgccaaggcagaagtgagcttgctgaacgtgcgtgggaagctaaatgtcaccatcaacagagatgttgagcggaacaaccaggttgcacaactagagcaagaaatggctttgcttcaggagcaagtgggggccaagactcagtgcgctattcttcagtgggaggtcgccaccgagaccacgaaattgaagaagttggaaatcgaggttgcccgactaggagccaagaggggtctggcggacaccgcctctgtagaggcttataaccggtttgtaaagtttaagtacaccctgacggaggcgaccaaggccggtgccttggccaacttcgacatgctggaccagaaaggcgtcattgacctgagcaaagtgcctcggcctagtggttctcagcggacccctatgccgactccttccgatctgtcccgggccgatttcctcgtggcttacactagggcggatggtactatggtgaagccaagtcttaccgctccttggtcctatcaaacaagctgcctggtcgtccagcaatcacaggttgacgccgagaatgtctgcaccgctccaagcaaccagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

307

Amino Acids

33.79

Weight (kDa)

5.51

Isoelectric Point (pI)

48.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 609
AatII GACGTC 1 cut(s) 317
AccB1I GGYRCC 1 cut(s) 659
AccBSI CCGCTC 4 cut(s) 19, 418, 836, 908
AcoI YGGCCR 2 cut(s) 237, 666
AcuI CTGAAG 2 cut(s) 446, 485
AcyI GRCGYC 3 cut(s) 314, 696, 888
AfaI GTAC 2 cut(s) 632, 811
AfiI CCNNNNNNNGG 3 cut(s) 171, 643, 840
AgeI ACCGGT 1 cut(s) 612
AgsI TTSAA 1 cut(s) 535
AjnI CCWGG 2 cut(s) 426, 861
AluBI AGCT 5 cut(s) 192, 229, 366, 388, 858
AluI AGCT 5 cut(s) 192, 229, 366, 388, 858
Alw26I GTCTC 5 cut(s) 12, 152, 305, 326, 515
AlwNI CAGNNNCTG 1 cut(s) 167
Ama87I CYCGRG 1 cut(s) 771
AoxI GGCC 8 cut(s) 31, 237, 340, 477, 654, 666, 722, 774
ApaI GGGCCC 1 cut(s) 35
ApeKI GCWGC 5 cut(s) 167, 181, 189, 265, 858
AsiGI ACCGGT 1 cut(s) 612
AspLEI GCGC 2 cut(s) 120, 494
AspS9I GGNCC 8 cut(s) 31, 32, 340, 477, 685, 741, 774, 843
AsuC2I CCSGG 2 cut(s) 772, 773
AsuHPI GGTGA 2 cut(s) 388, 829
AvaI CYCGRG 1 cut(s) 771
AvaII GGWCC 3 cut(s) 685, 741, 843
BaeGI GKGCMC 2 cut(s) 35, 207
BaeI ACNNNNGTAYC 2 cut(s) 801, 834
BalI TGGCCA 1 cut(s) 668
BanI GGYRCC 1 cut(s) 659
BanII GRGCYC 1 cut(s) 35
BauI CACGAG 2 cut(s) 224, 785
BbsI GAAGAC 1 cut(s) 284
BbvI GCAGC 5 cut(s) 154, 168, 201, 277, 845
BccI CCATC 2 cut(s) 407, 800
BcgI CGANNNNNNTGC 4 cut(s) 97, 131, 231, 265
BciT130I CCWGG 2 cut(s) 428, 863
BcnI CCSGG 2 cut(s) 772, 773
BcoDI GTCTC 5 cut(s) 12, 152, 305, 326, 515
BfaI CTAG 5 cut(s) 171, 440, 563, 726, 798
BfmI CTRYAG 2 cut(s) 258, 597
BisI GCNGC 7 cut(s) 165, 168, 182, 190, 240, 266, 859
BlpI GCTNAGC 1 cut(s) 185
BlsI GCNGC 7 cut(s) 166, 169, 183, 191, 241, 267, 860
Bme1390I CCNGG 4 cut(s) 428, 772, 773, 863
Bme18I GGWCC 3 cut(s) 685, 741, 843
BmeT110I CYCGRG 1 cut(s) 771
BmgT120I GGNCC 8 cut(s) 31, 32, 340, 477, 685, 741, 774, 843
BmiI GGNNCC 6 cut(s) 33, 34, 478, 568, 661, 743
BmrFI CCNGG 4 cut(s) 428, 772, 773, 863
BmrI ACTGGG 1 cut(s) 30
BmsI GCATC 1 cut(s) 251
BmuI ACTGGG 1 cut(s) 30
BpiI GAAGAC 1 cut(s) 284
BplI GAGNNNNNCTC 2 cut(s) 130, 162
BpmI CTGGAG 1 cut(s) 347
Bpu10I CCTNAGC 1 cut(s) 707
Bpu1102I GCTNAGC 1 cut(s) 185
BpuMI CCSGG 2 cut(s) 772, 773
BsaHI GRCGYC 3 cut(s) 314, 696, 888
BsaI GGTCTC 1 cut(s) 515
BsaJI CCNNGG 6 cut(s) 351, 651, 663, 719, 771, 839
BsaWI WCCGGW 1 cut(s) 612
Bsc4I CCNNNNNNNGG 3 cut(s) 171, 643, 840
Bse118I RCCGGY 2 cut(s) 612, 656
Bse1I ACTGG 3 cut(s) 36, 330, 919
BseBI CCWGG 2 cut(s) 428, 863
BseDI CCNNGG 6 cut(s) 351, 651, 663, 719, 771, 839
BseGI GGATG 1 cut(s) 811
BseLI CCNNNNNNNGG 3 cut(s) 171, 643, 840
BseMII CTCAG 6 cut(s) 34, 176, 327, 500, 698, 749
BseNI ACTGG 3 cut(s) 36, 330, 919
BseRI GAGGAG 2 cut(s) 323, 344
BseSI GKGCMC 2 cut(s) 35, 207
BseXI GCAGC 5 cut(s) 154, 168, 201, 277, 845
BsgI GTGCAG 1 cut(s) 886
BshFI GGCC 8 cut(s) 33, 239, 342, 479, 656, 668, 724, 776
BshNI GGYRCC 1 cut(s) 659
BshTI ACCGGT 1 cut(s) 612
BsiHKCI CYCGRG 1 cut(s) 771
BsiSI CCGG 3 cut(s) 613, 657, 772
BslFI GGGAC 1 cut(s) 754
BslI CCNNNNNNNGG 3 cut(s) 171, 643, 840
BsmAI GTCTC 5 cut(s) 12, 152, 305, 326, 515
BsmBI CGTCTC 1 cut(s) 305
BsmFI GGGAC 1 cut(s) 754
BsnI GGCC 8 cut(s) 33, 239, 342, 479, 656, 668, 724, 776
Bso31I GGTCTC 1 cut(s) 515
BsoBI CYCGRG 1 cut(s) 771
Bsp120I GGGCCC 1 cut(s) 31
Bsp1286I GDGCHC 2 cut(s) 35, 207
Bsp143I GATC 1 cut(s) 763
Bsp1720I GCTNAGC 1 cut(s) 185
BspANI GGCC 8 cut(s) 33, 239, 342, 479, 656, 668, 724, 776
BspCNI CTCAG 6 cut(s) 33, 177, 328, 499, 699, 748
BspLI GGNNCC 6 cut(s) 33, 34, 478, 568, 661, 743
BspMAI CTGCAG 1 cut(s) 262
BspT107I GGYRCC 1 cut(s) 659
BspTNI GGTCTC 1 cut(s) 515
BsrBI CCGCTC 4 cut(s) 19, 418, 836, 908
BsrFI RCCGGY 2 cut(s) 612, 656
BsrI ACTGG 3 cut(s) 36, 330, 919
BssAI RCCGGY 2 cut(s) 612, 656
BssECI CCNNGG 6 cut(s) 351, 651, 663, 719, 771, 839
BssMI GATC 1 cut(s) 763
BssNI GRCGYC 3 cut(s) 314, 696, 888
BssSI CACGAG 2 cut(s) 224, 785
BssT1I CCWWGG 4 cut(s) 351, 651, 663, 839
Bst2BI CACGAG 2 cut(s) 224, 785
Bst2UI CCWGG 2 cut(s) 428, 863
Bst4CI ACNGT 1 cut(s) 103
BstACI GRCGYC 3 cut(s) 314, 696, 888
BstC8I GCNNGC 2 cut(s) 258, 368
BstDEI CTNAG 6 cut(s) 20, 185, 336, 486, 707, 735
BstENI CCTNNNNNAGG 1 cut(s) 641
BstF5I GGATG 1 cut(s) 811
BstHHI GCGC 2 cut(s) 120, 494
BstKTI GATC 1 cut(s) 766
BstMAI GTCTC 5 cut(s) 12, 152, 305, 326, 515
BstMBI GATC 1 cut(s) 763
BstMWI GCNNNNNNNGC 8 cut(s) 124, 226, 262, 376, 385, 466, 590, 653
BstNI CCWGG 2 cut(s) 428, 863
BstNSI RCATGY 1 cut(s) 682
BstSCI CCNGG 4 cut(s) 426, 770, 771, 861
BstSFI CTRYAG 2 cut(s) 258, 597
BstSLI GKGCMC 2 cut(s) 35, 207
BstV1I GCAGC 5 cut(s) 154, 168, 201, 277, 845
BstV2I GAAGAC 1 cut(s) 284
BstXI CCANNNNNNTGG 1 cut(s) 325
BsuRI GGCC 8 cut(s) 33, 239, 342, 479, 656, 668, 724, 776
BtsCI GGATG 1 cut(s) 811
BtsIMutI CAGTG 4 cut(s) 28, 108, 494, 509
Cac8I GCNNGC 2 cut(s) 258, 368
CaiI CAGNNNCTG 1 cut(s) 167
CfoI GCGC 2 cut(s) 120, 494
Cfr10I RCCGGY 2 cut(s) 612, 656
Cfr13I GGNCC 8 cut(s) 31, 32, 340, 477, 685, 741, 774, 843
Cfr9I CCCGGG 1 cut(s) 771
CseI GACGC 3 cut(s) 50, 685, 896
CsiI ACCWGGT 1 cut(s) 426
Csp6I GTAC 2 cut(s) 631, 810
CspAI ACCGGT 1 cut(s) 612
CviAII CATG 2 cut(s) 28, 679
CviQI GTAC 2 cut(s) 631, 810
DdeI CTNAG 6 cut(s) 20, 185, 336, 486, 707, 735
DpnI GATC 1 cut(s) 765
DpnII GATC 1 cut(s) 763
EaeI YGGCCR 2 cut(s) 237, 666
EciI GGCGGA 2 cut(s) 599, 818
Eco130I CCWWGG 4 cut(s) 351, 651, 663, 839
Eco24I GRGCYC 1 cut(s) 35
Eco31I GGTCTC 1 cut(s) 515
Eco47I GGWCC 3 cut(s) 685, 741, 843
Eco57I CTGAAG 2 cut(s) 446, 485
Eco88I CYCGRG 1 cut(s) 771
EcoNI CCTNNNNNAGG 1 cut(s) 641
EcoO109I RGGNCCY 2 cut(s) 32, 340
EcoRII CCWGG 2 cut(s) 426, 861
EcoT14I CCWWGG 4 cut(s) 351, 651, 663, 839
EcoT38I GRGCYC 1 cut(s) 35
ErhI CCWWGG 4 cut(s) 351, 651, 663, 839
Esp3I CGTCTC 1 cut(s) 305
FaeI CATG 2 cut(s) 31, 682
FaiI YATR 5 cut(s) 29, 609, 680, 749, 815
FaqI GGGAC 1 cut(s) 754
FatI CATG 2 cut(s) 27, 678
Fnu4HI GCNGC 7 cut(s) 165, 168, 182, 190, 240, 266, 859
FokI GGATG 1 cut(s) 818
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 7 cut(s) 165, 168, 182, 190, 240, 266, 859
FspBI CTAG 5 cut(s) 171, 440, 563, 726, 798
GlaI GCGC 2 cut(s) 119, 493
GluI GCNGC 7 cut(s) 165, 168, 182, 190, 240, 266, 859
GsuI CTGGAG 1 cut(s) 347
HaeIII GGCC 8 cut(s) 33, 239, 342, 479, 656, 668, 724, 776
HapII CCGG 3 cut(s) 613, 657, 772
HgaI GACGC 3 cut(s) 50, 685, 896
HhaI GCGC 2 cut(s) 120, 494
Hin1I GRCGYC 3 cut(s) 314, 696, 888
Hin1II CATG 2 cut(s) 31, 682
Hin6I GCGC 2 cut(s) 118, 492
HinP1I GCGC 2 cut(s) 118, 492
HincII GTYRAC 1 cut(s) 886
HindII GTYRAC 1 cut(s) 886
HinfI GANTC 3 cut(s) 145, 484, 754
HpaII CCGG 3 cut(s) 613, 657, 772
HphI GGTGA 2 cut(s) 388, 829
Hpy166II GTNNAC 2 cut(s) 633, 886
Hpy188I TCNGA 1 cut(s) 763
Hpy188III TCNNGA 1 cut(s) 464
Hpy8I GTNNAC 2 cut(s) 633, 886
Hpy99I CGWCG 2 cut(s) 256, 300
HpyAV CCTTC 1 cut(s) 768
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4IV ACGT 2 cut(s) 314, 375
HpyCH4V TGCA 3 cut(s) 260, 434, 903
HpyF10VI GCNNNNNNNGC 8 cut(s) 124, 226, 262, 376, 385, 466, 590, 653
HpyF3I CTNAG 6 cut(s) 20, 185, 336, 486, 707, 735
HpySE526I ACGT 2 cut(s) 314, 375
Hsp92I GRCGYC 3 cut(s) 314, 696, 888
Hsp92II CATG 2 cut(s) 31, 682
HspAI GCGC 2 cut(s) 118, 492
Kzo9I GATC 1 cut(s) 763
LmnI GCTCC 4 cut(s) 466, 566, 841, 913
Lsp1109I GCAGC 5 cut(s) 154, 168, 201, 277, 845
LweI GCATC 1 cut(s) 251
MabI ACCWGGT 1 cut(s) 426
MaeI CTAG 5 cut(s) 171, 440, 563, 726, 798
MaeII ACGT 2 cut(s) 314, 375
MaeIII GTNAC 2 cut(s) 23, 394
MalI GATC 1 cut(s) 765
MbiI CCGCTC 4 cut(s) 19, 418, 836, 908
MboI GATC 1 cut(s) 763
MboII GAAGA 5 cut(s) 67, 142, 284, 491, 547
MhlI GDGCHC 2 cut(s) 35, 207
MlsI TGGCCA 1 cut(s) 668
MluCI AATT 2 cut(s) 282, 530
MluNI TGGCCA 1 cut(s) 668
MlyI GAGTC 3 cut(s) 139, 478, 748
MmeI TCCRAC 2 cut(s) 35, 522
Mox20I TGGCCA 1 cut(s) 668
MscI TGGCCA 1 cut(s) 668
MseI TTAA 1 cut(s) 627
Msp20I TGGCCA 1 cut(s) 668
MspA1I CMGCKG 2 cut(s) 167, 739
MspI CCGG 3 cut(s) 613, 657, 772
MspR9I CCNGG 4 cut(s) 428, 772, 773, 863
MvaI CCWGG 2 cut(s) 428, 863
MwoI GCNNNNNNNGC 8 cut(s) 124, 226, 262, 376, 385, 466, 590, 653
NciI CCSGG 2 cut(s) 772, 773
NdeII GATC 1 cut(s) 763
NlaIII CATG 2 cut(s) 31, 682
NlaIV GGNNCC 6 cut(s) 33, 34, 478, 568, 661, 743
NmeAIII GCCGAG 2 cut(s) 700, 916
NmuCI GTSAC 2 cut(s) 23, 394
NspI RCATGY 1 cut(s) 682
PinAI ACCGGT 1 cut(s) 612
PkrI GCNGC 7 cut(s) 166, 169, 183, 191, 241, 267, 860
PleI GAGTC 3 cut(s) 139, 478, 748
PpsI GAGTC 3 cut(s) 139, 478, 748
PsiI TTATAA 1 cut(s) 609
Psp6I CCWGG 2 cut(s) 426, 861
PspGI CCWGG 2 cut(s) 426, 861
PspN4I GGNNCC 6 cut(s) 33, 34, 478, 568, 661, 743
PspOMI GGGCCC 1 cut(s) 31
PspPI GGNCC 8 cut(s) 31, 32, 340, 477, 685, 741, 774, 843
PstI CTGCAG 1 cut(s) 262
PstNI CAGNNNCTG 1 cut(s) 167
RsaI GTAC 2 cut(s) 632, 811
RsaNI GTAC 2 cut(s) 631, 810
SaqAI TTAA 1 cut(s) 627
SatI GCNGC 7 cut(s) 165, 168, 182, 190, 240, 266, 859
Sau3AI GATC 1 cut(s) 763
Sau96I GGNCC 8 cut(s) 31, 32, 340, 477, 685, 741, 774, 843
SchI GAGTC 3 cut(s) 139, 478, 748
ScrFI CCNGG 4 cut(s) 428, 772, 773, 863
SduI GDGCHC 2 cut(s) 35, 207
SexAI ACCWGGT 1 cut(s) 426
SfaNI GCATC 1 cut(s) 251
SfcI CTRYAG 2 cut(s) 258, 597
SinI GGWCC 3 cut(s) 685, 741, 843
SmaI CCCGGG 1 cut(s) 773
Sse9I AATT 2 cut(s) 282, 530
SspMI CTAG 5 cut(s) 171, 440, 563, 726, 798
StyD4I CCNGG 4 cut(s) 426, 770, 771, 861
StyI CCWWGG 4 cut(s) 351, 651, 663, 839
TaaI ACNGT 1 cut(s) 103
TaiI ACGT 2 cut(s) 317, 378
TaqI TCGA 4 cut(s) 75, 295, 549, 675
TasI AATT 2 cut(s) 282, 530
TatI WGTACW 1 cut(s) 630
TauI GCSGC 2 cut(s) 167, 242
Tru1I TTAA 1 cut(s) 627
Tru9I TTAA 1 cut(s) 627
TscAI CASTG 4 cut(s) 28, 108, 494, 509
TseFI GTSAC 2 cut(s) 23, 394
TseI GCWGC 5 cut(s) 167, 181, 189, 265, 858
Tsp45I GTSAC 2 cut(s) 23, 394
TspDTI ATGAA 2 cut(s) 93, 294
TspGWI ACGGA 2 cut(s) 202, 656
TspMI CCCGGG 1 cut(s) 771
TspRI CASTG 4 cut(s) 28, 108, 494, 509
VpaK11BI GGWCC 3 cut(s) 685, 741, 843
XagI CCTNNNNNAGG 1 cut(s) 641
XceI RCATGY 1 cut(s) 682
XcmI CCANNNNNNNNNTGG 1 cut(s) 577
XmaI CCCGGG 1 cut(s) 771
XspI CTAG 5 cut(s) 171, 440, 563, 726, 798
ZraI GACGTC 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.