Rh2BG415500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0014869
Physical Location & Seq
Reverse (-)
58700217 .. 58705455
5239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG415500.1

Sequence Viewer

Length: 276 bp
ATGGTAACGGGCTACAGTAACGTATATACTGTGCGGCTACCAGCTGACCAAGGTGCCTACTCCGTCAGCGATGAATTTGCCCAATGTGTTGACCTTGCGCCGCAGCAGACACTGCTGGTGATTGTTTCCGAGGCTTCACGTATTCAATTCATTGCCGCCCATACCAAGCTTGACAGGACTATGCAAACACCTAGTCCCAACATTCATGGCCAGCGATCAGAGGAGACAAGCCAGAAGTCGGGGCTAGATGGTGATAGTGGTGTTGCGAAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

9.83

Weight (kDa)

5.1

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 53
AciI CCGC 3 cut(s) 34, 101, 156
AcoI YGGCCR 1 cut(s) 208
AcsI RAATTY 1 cut(s) 74
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 1 cut(s) 146
AluBI AGCT 2 cut(s) 44, 169
AluI AGCT 2 cut(s) 44, 169
Alw26I GTCTC 1 cut(s) 218
AlwNI CAGNNNCTG 1 cut(s) 112
AoxI GGCC 1 cut(s) 208
ApeKI GCWGC 1 cut(s) 103
ApoI RAATTY 1 cut(s) 74
ArsI GACNNNNNNTTYG 2 cut(s) 178, 210
AspLEI GCGC 1 cut(s) 100
AsuHPI GGTGA 2 cut(s) 130, 263
BalI TGGCCA 1 cut(s) 210
BanI GGYRCC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 115
BccI CCATC 1 cut(s) 242
BcgI CGANNNNNNTGC 2 cut(s) 59, 93
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 2 cut(s) 192, 245
BfmI CTRYAG 1 cut(s) 13
BisI GCNGC 4 cut(s) 35, 101, 104, 156
BlsI GCNGC 4 cut(s) 36, 102, 105, 157
BmiI GGNNCC 1 cut(s) 55
BsaAI YACGTR 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 49, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse3DI GCAATG 1 cut(s) 150
BseDI CCNNGG 2 cut(s) 49, 129
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMI GCAATG 1 cut(s) 150
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 1 cut(s) 115
BshFI GGCC 1 cut(s) 210
BshNI GGYRCC 1 cut(s) 53
BslFI GGGAC 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 180
BsnI GGCC 1 cut(s) 210
Bsp143I GATC 1 cut(s) 215
BspACI CCGC 3 cut(s) 34, 101, 156
BspANI GGCC 1 cut(s) 210
BspLI GGNNCC 1 cut(s) 55
BspT107I GGYRCC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 150
BssECI CCNNGG 2 cut(s) 49, 129
BssMI GATC 1 cut(s) 215
BssT1I CCWWGG 1 cut(s) 49
Bst4CI ACNGT 2 cut(s) 17, 31
BstAPI GCANNNNNTGC 1 cut(s) 112
BstBAI YACGTR 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 212
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 1 cut(s) 218
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 1 cut(s) 215
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstSFI CTRYAG 1 cut(s) 13
BstV1I GCAGC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 210
BtgZI GCGATG 1 cut(s) 84
BtsI GCAGTG 1 cut(s) 110
BtsIMutI CAGTG 1 cut(s) 110
Cac8I GCNNGC 1 cut(s) 212
CaiI CAGNNNCTG 1 cut(s) 112
CfoI GCGC 1 cut(s) 100
CviAII CATG 1 cut(s) 206
CviJI RGCY 8 cut(s) 12, 37, 44, 134, 169, 210, 231, 244
CviKI_1 RGCY 8 cut(s) 12, 37, 44, 134, 169, 210, 231, 244
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
EaeI YGGCCR 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 49
FaeI CATG 1 cut(s) 209
FaiI YATR 5 cut(s) 25, 27, 162, 182, 207
FaqI GGGAC 1 cut(s) 180
FatI CATG 1 cut(s) 205
Fnu4HI GCNGC 4 cut(s) 35, 101, 104, 156
Fsp4HI GCNGC 4 cut(s) 35, 101, 104, 156
FspBI CTAG 2 cut(s) 192, 245
GlaI GCGC 1 cut(s) 99
GluI GCNGC 4 cut(s) 35, 101, 104, 156
HaeIII GGCC 1 cut(s) 210
HhaI GCGC 1 cut(s) 100
Hin1II CATG 1 cut(s) 209
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HindIII AAGCTT 1 cut(s) 167
HphI GGTGA 2 cut(s) 130, 263
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 2 cut(s) 130, 220
Hpy8I GTNNAC 1 cut(s) 91
HpyCH4III ACNGT 2 cut(s) 17, 31
HpyCH4IV ACGT 2 cut(s) 21, 139
HpyCH4V TGCA 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpySE526I ACGT 2 cut(s) 21, 139
Hsp92II CATG 1 cut(s) 209
HspAI GCGC 1 cut(s) 98
Kzo9I GATC 1 cut(s) 215
LpnPI CCDG 5 cut(s) 54, 101, 160, 224, 245
Lsp1109I GCAGC 1 cut(s) 115
MaeI CTAG 2 cut(s) 192, 245
MaeII ACGT 2 cut(s) 21, 139
MaeIII GTNAC 2 cut(s) 4, 17
MalI GATC 1 cut(s) 217
MboI GATC 1 cut(s) 215
MlsI TGGCCA 1 cut(s) 210
MluCI AATT 2 cut(s) 74, 146
MluNI TGGCCA 1 cut(s) 210
MnlI CCTC 2 cut(s) 124, 214
Mox20I TGGCCA 1 cut(s) 210
MscI TGGCCA 1 cut(s) 210
Msp20I TGGCCA 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 44
MwoI GCNNNNNNNGC 1 cut(s) 112
NdeII GATC 1 cut(s) 215
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 1 cut(s) 55
PkrI GCNGC 4 cut(s) 36, 102, 105, 157
Ppu21I YACGTR 1 cut(s) 140
PspN4I GGNNCC 1 cut(s) 55
PstNI CAGNNNCTG 1 cut(s) 112
PvuII CAGCTG 1 cut(s) 44
SatI GCNGC 4 cut(s) 35, 101, 104, 156
Sau3AI GATC 1 cut(s) 215
SetI ASST 7 cut(s) 24, 46, 55, 96, 142, 171, 193
SfcI CTRYAG 1 cut(s) 13
Sse9I AATT 2 cut(s) 74, 146
SsiI CCGC 3 cut(s) 34, 101, 156
SspMI CTAG 2 cut(s) 192, 245
StyI CCWWGG 1 cut(s) 49
TaaI ACNGT 2 cut(s) 17, 31
TaiI ACGT 2 cut(s) 24, 142
TasI AATT 2 cut(s) 74, 146
TauI GCSGC 3 cut(s) 37, 103, 158
TscAI CASTG 1 cut(s) 117
TseI GCWGC 1 cut(s) 103
TspDTI ATGAA 3 cut(s) 87, 139, 194
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 1 cut(s) 117
XapI RAATTY 1 cut(s) 74
XspI CTAG 2 cut(s) 192, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.