Rh7CG085000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0014869
Physical Location & Seq
Forward (+)
6172432 .. 6172656
225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG085000.1

Sequence Viewer

Length: 225 bp
ATGCCTTACCACTCACGTTTGGCGCCGGCGGAGGGCGGGACTGTGATTCGACCCGTTGCTCCTGCTATAGAAAGGGGAGCAGCTGGTGGTACTTGTTTTGGCGACTTTTCAGGGAAGGCCGCTGACAAGGTGGTTGCCATGCGCCGAGGAGGGCCTTCCCAGAGGGAGAATACTGCAATGGCGGCTGAGAAACTCAGGGCTGGCAGTGGCTCCGTGGTTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

7.53

Weight (kDa)

10.01

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 22
AciI CCGC 4 cut(s) 29, 36, 120, 182
AcyI GRCGYC 1 cut(s) 23
AfaI GTAC 1 cut(s) 91
AfiI CCNNNNNNNGG 1 cut(s) 32
AgsI TTSAA 1 cut(s) 221
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
AoxI GGCC 2 cut(s) 117, 152
ApeKI GCWGC 1 cut(s) 80
AspLEI GCGC 2 cut(s) 25, 144
AspS9I GGNCC 1 cut(s) 152
BanI GGYRCC 1 cut(s) 22
BbvI GCAGC 1 cut(s) 92
BfmI CTRYAG 1 cut(s) 66
BfoI RGCGCY 1 cut(s) 26
BisI GCNGC 3 cut(s) 81, 120, 183
BlsI GCNGC 3 cut(s) 82, 121, 184
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 2 cut(s) 24, 211
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 145, 213
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse118I RCCGGY 1 cut(s) 25
Bse3DI GCAATG 1 cut(s) 183
BseDI CCNNGG 2 cut(s) 145, 213
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 2 cut(s) 177, 208
BseRI GAGGAG 1 cut(s) 162
BseXI GCAGC 1 cut(s) 92
BshFI GGCC 2 cut(s) 119, 154
BshNI GGYRCC 1 cut(s) 22
BsiSI CCGG 1 cut(s) 26
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 52
BsnI GGCC 2 cut(s) 119, 154
BspACI CCGC 4 cut(s) 29, 36, 120, 182
BspANI GGCC 2 cut(s) 119, 154
BspCNI CTCAG 2 cut(s) 178, 207
BspLI GGNNCC 2 cut(s) 24, 211
BspT107I GGYRCC 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 25
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 2 cut(s) 145, 213
BssNI GRCGYC 1 cut(s) 23
Bst4CI ACNGT 1 cut(s) 43
BstACI GRCGYC 1 cut(s) 23
BstC8I GCNNGC 2 cut(s) 27, 202
BstDEI CTNAG 2 cut(s) 186, 194
BstDSI CCRYGG 1 cut(s) 213
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 2 cut(s) 25, 144
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 66
BstV1I GCAGC 1 cut(s) 92
BsuRI GGCC 2 cut(s) 119, 154
BtgI CCRYGG 1 cut(s) 213
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 211
Cac8I GCNNGC 2 cut(s) 27, 202
CfoI GCGC 2 cut(s) 25, 144
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 152
Csp6I GTAC 1 cut(s) 90
CviAII CATG 1 cut(s) 139
CviJI RGCY 6 cut(s) 83, 119, 154, 185, 200, 210
CviKI_1 RGCY 6 cut(s) 83, 119, 154, 185, 200, 210
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 2 cut(s) 186, 194
DinI GGCGCC 1 cut(s) 24
EciI GGCGGA 1 cut(s) 44
EcoO109I RGGNCCY 1 cut(s) 152
EgeI GGCGCC 1 cut(s) 24
EheI GGCGCC 1 cut(s) 24
FaeI CATG 1 cut(s) 142
FaiI YATR 2 cut(s) 68, 140
FaqI GGGAC 1 cut(s) 52
FatI CATG 1 cut(s) 138
FauI CCCGC 1 cut(s) 29
Fnu4HI GCNGC 3 cut(s) 81, 120, 183
Fsp4HI GCNGC 3 cut(s) 81, 120, 183
GlaI GCGC 2 cut(s) 24, 143
GluI GCNGC 3 cut(s) 81, 120, 183
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 2 cut(s) 119, 154
HapII CCGG 1 cut(s) 26
HhaI GCGC 2 cut(s) 25, 144
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 1 cut(s) 142
Hin6I GCGC 2 cut(s) 23, 142
HinP1I GCGC 2 cut(s) 23, 142
HinfI GANTC 1 cut(s) 46
HpaII CCGG 1 cut(s) 26
HpyAV CCTTC 2 cut(s) 109, 165
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 2 cut(s) 186, 194
HpySE526I ACGT 1 cut(s) 16
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 1 cut(s) 142
HspAI GCGC 2 cut(s) 23, 142
KasI GGCGCC 1 cut(s) 22
KroI GCCGGC 1 cut(s) 25
KroNI GCCGGC 1 cut(s) 27
LmnI GCTCC 3 cut(s) 64, 77, 215
LpnPI CCDG 7 cut(s) 39, 69, 75, 96, 173, 181, 186
Lsp1109I GCAGC 1 cut(s) 92
MaeII ACGT 1 cut(s) 16
Mly113I GGCGCC 1 cut(s) 23
MnlI CCTC 4 cut(s) 25, 140, 143, 156
MreI CGCCGGCG 1 cut(s) 25
MroNI GCCGGC 1 cut(s) 25
MspA1I CMGCKG 2 cut(s) 83, 122
MspI CCGG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 182
NaeI GCCGGC 1 cut(s) 27
NarI GGCGCC 1 cut(s) 23
NgoMIV GCCGGC 1 cut(s) 25
NlaIII CATG 1 cut(s) 142
NlaIV GGNNCC 2 cut(s) 24, 211
NmeAIII GCCGAG 1 cut(s) 170
PdiI GCCGGC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 46
PkrI GCNGC 3 cut(s) 82, 121, 184
PluTI GGCGCC 1 cut(s) 26
PspN4I GGNNCC 2 cut(s) 24, 211
PspPI GGNCC 1 cut(s) 152
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SatI GCNGC 3 cut(s) 81, 120, 183
Sau96I GGNCC 1 cut(s) 152
SetI ASST 3 cut(s) 19, 85, 132
SfcI CTRYAG 1 cut(s) 66
SfoI GGCGCC 1 cut(s) 24
SgrAI CRCCGGYG 1 cut(s) 25
SsiI CCGC 4 cut(s) 29, 36, 120, 182
SspDI GGCGCC 1 cut(s) 22
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 1 cut(s) 19
TaqI TCGA 1 cut(s) 49
TauI GCSGC 2 cut(s) 122, 185
TfiI GAWTC 1 cut(s) 46
TscAI CASTG 1 cut(s) 211
TseI GCWGC 1 cut(s) 80
TspGWI ACGGA 1 cut(s) 202
TspRI CASTG 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.