RLG00000018969

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
43771027 .. 43771446
420 bp
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UTR
Exon/CDS
Intron
RLM00000018969

Sequence Viewer

Length: 420 bp
ATGAAAGAACTATTGGTTGTGGGCACCAACTCTAGATGTAGCCACAGAAGATCGAAGCGTATAACTAAAGATAATAAAGTTAAAATTGAACCAATAACTTCAACTATTTATGCAAAGGGTACGGGGTCAGAATTTGCAGCCCAAAATTTATTGGAAGATTTGCGAAAGCAATACATGGAGAAGAAAAACTCTGGTGTTAAACCAACTCTTAAAGAAATTGAGGATTACGGTCTGCTATGTATCCGAACTATGAAGAATACTAGTAAATCATCTTATATTGTTATTGGAATTAAAAATGAGAAGTCTCAAGCTTATGGTTTTGTTGATATGGAAAAATACAAGAATACTCTGCCTCTTAAGACATGGTGGGCATCTAACAGTGATAGAAAGTATGCTACACCACTACGAACTCAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

16.03

Weight (kDa)

9.88

Isoelectric Point (pI)

34.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 23
AcsI RAATTY 2 cut(s) 131, 145
AfaI GTAC 1 cut(s) 121
AflII CTTAAG 1 cut(s) 356
AgsI TTSAA 2 cut(s) 89, 102
AhlI ACTAGT 1 cut(s) 260
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 1 cut(s) 311
AluI AGCT 1 cut(s) 311
Alw26I GTCTC 1 cut(s) 309
ApeKI GCWGC 1 cut(s) 137
ApoI RAATTY 2 cut(s) 131, 145
BaeGI GKGCMC 1 cut(s) 26
BanI GGYRCC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 149
BciVI GTATCC 1 cut(s) 251
BcoDI GTCTC 1 cut(s) 309
BcuI ACTAGT 1 cut(s) 260
BfaI CTAG 2 cut(s) 33, 261
BfrI CTTAAG 1 cut(s) 356
BfuI GTATCC 1 cut(s) 251
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
BmiI GGNNCC 1 cut(s) 25
BmsI GCATC 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 291
BseSI GKGCMC 1 cut(s) 26
BseXI GCAGC 1 cut(s) 149
BshNI GGYRCC 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 309
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 25
BspT107I GGYRCC 1 cut(s) 23
BspTI CTTAAG 1 cut(s) 356
BssMI GATC 1 cut(s) 50
Bst4CI ACNGT 2 cut(s) 230, 380
BstAFI CTTAAG 1 cut(s) 356
BstKTI GATC 1 cut(s) 53
BstMAI GTCTC 1 cut(s) 309
BstMBI GATC 1 cut(s) 50
BstSLI GKGCMC 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 149
BsuI GTATCC 1 cut(s) 251
BtsIMutI CAGTG 1 cut(s) 385
Csp6I GTAC 1 cut(s) 120
CviAII CATG 2 cut(s) 175, 363
CviJI RGCY 3 cut(s) 42, 140, 311
CviKI_1 RGCY 3 cut(s) 42, 140, 311
CviQI GTAC 1 cut(s) 120
DpnI GATC 1 cut(s) 52
DpnII GATC 1 cut(s) 50
FaeI CATG 2 cut(s) 178, 366
FatI CATG 2 cut(s) 174, 362
Fnu4HI GCNGC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 2 cut(s) 33, 261
GluI GCNGC 1 cut(s) 138
Hin1II CATG 2 cut(s) 178, 366
HindIII AAGCTT 1 cut(s) 309
Hpy188I TCNGA 2 cut(s) 130, 245
Hpy188III TCNNGA 1 cut(s) 33
HpyCH4III ACNGT 2 cut(s) 230, 380
HpyCH4V TGCA 2 cut(s) 113, 137
Hsp92II CATG 2 cut(s) 178, 366
Kzo9I GATC 1 cut(s) 50
LpnPI CCDG 1 cut(s) 177
Lsp1109I GCAGC 1 cut(s) 149
LweI GCATC 1 cut(s) 380
MaeI CTAG 2 cut(s) 33, 261
MalI GATC 1 cut(s) 52
MboI GATC 1 cut(s) 50
MboII GAAGA 4 cut(s) 60, 167, 193, 265
MhlI GDGCHC 1 cut(s) 26
MluCI AATT 5 cut(s) 84, 131, 145, 216, 288
MnlI CCTC 2 cut(s) 214, 363
MseI TTAA 5 cut(s) 81, 198, 210, 291, 357
MspCI CTTAAG 1 cut(s) 356
NdeII GATC 1 cut(s) 50
NlaIII CATG 2 cut(s) 178, 366
NlaIV GGNNCC 1 cut(s) 25
PkrI GCNGC 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 25
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
SaqAI TTAA 5 cut(s) 81, 198, 210, 291, 357
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 1 cut(s) 50
SduI GDGCHC 1 cut(s) 26
SetI ASST 1 cut(s) 313
SfaNI GCATC 1 cut(s) 380
SgeI CNNG 8 cut(s) 45, 135, 187, 204, 273, 320, 352, 375
SmlI CTYRAG 2 cut(s) 306, 356
SmoI CTYRAG 2 cut(s) 306, 356
SpeI ACTAGT 1 cut(s) 260
Sse9I AATT 5 cut(s) 84, 131, 145, 216, 288
SspMI CTAG 2 cut(s) 33, 261
TaaI ACNGT 2 cut(s) 230, 380
TaqI TCGA 1 cut(s) 53
TasI AATT 5 cut(s) 84, 131, 145, 216, 288
Tru1I TTAA 5 cut(s) 81, 198, 210, 291, 357
Tru9I TTAA 5 cut(s) 81, 198, 210, 291, 357
TscAI CASTG 1 cut(s) 385
TseI GCWGC 1 cut(s) 137
TspDTI ATGAA 2 cut(s) 17, 266
TspRI CASTG 1 cut(s) 385
Vha464I CTTAAG 1 cut(s) 356
XapI RAATTY 2 cut(s) 131, 145
XbaI TCTAGA 1 cut(s) 32
XspI CTAG 2 cut(s) 33, 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.