Rroxscaffold_1G00073690

Proteasome subunit beta type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0015757
Physical Location & Seq
Reverse (-)
94421050 .. 94423305
2256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00073690.1

Sequence Viewer

Length: 987 bp
ATGCCAGAATGTATCAAAATCAAATATAATTACAATCCAATTGAATCTGGAAACATAAACGTTGAGTTGATTCGAATTTCAGGCACTACCATCATTTTTATAAAGACGAATGAACTGGTGATCGTTGGCAGCGACTCTAGATGTAGCAACCGCAGATCGAACCGTATAGTTAACGATGATGGGTTTAAAATTGAAGCAATAACTTCAAATATTTATGCAACATGTACGGGATTGTTTAGTGCAGCCCAAGTATTGTTTGAAGATTTGCGAAAGCAGTACATGGAGAAGAAAAACTCTGGTGTTGAACCGACTCTTAAAGAAATTGCAGATTACGGTCGGCAACGTATCCGGACATGGGACAATAGCGCGCATTATAATGTTATTGGAACTGAAAATGGGAAGCCCCAAGCTTATGGTTTTGTTGATAAAGAAAAGTACAAGGATAGTGTGGCGCTCAAGACGTGGTGGTCATTTGGCAGTGGTACAAAGTATGCTAAGCCAGAGCTCAATGCTAATTACAACAGGGGGATGTCTGAACCACTTGCATTGAATTTAACTGAAACGGCTTTTTTAGCTGCAGCCTTAGGTGATCCATTTACTGGGGGATACCTACGTGTTTTTGTCTTTGACTCAAACGGATTAAGAAAGGAGTATTCCAAGACTACATGGGAGTTGTATTTGAGTTACTACTCACTCTCACATGAGTTCCATTCAAGAACAATCTACATCTTTTCTCGCGGCCAGATTGGTGACACTGTAGTGACCCAATGGTTTAGTTCTGGATGTCTTATTGAACCGGTTGATGTGATGGTCGTATATCCTGTTGGATATATTGGGGGATACATTGTTCGTCGTGTGGTTTTTCGGGAGAAAGATGCTGCAACCATTATTCAAGAAGTACAACACCAATGTGAAAGATATGGTTGTCGTGATAGAATTGACGAAGAAATTAATACGTTTCCGTGTCTTCAAATTGTTAATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Proteasome

Protein Analysis

328

Amino Acids

37.41

Weight (kDa)

6.47

Isoelectric Point (pI)

38.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 28 - 207 3.5e-14 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 101, 375
AasI GACNNNNNNGTC 1 cut(s) 466
AccB7I CCANNNNNTGG 1 cut(s) 599
AccII CGCG 2 cut(s) 368, 738
AccIII TCCGGA 1 cut(s) 348
AciI CCGC 2 cut(s) 151, 738
AclI AACGTT 1 cut(s) 60
AclWI GGATC 1 cut(s) 584
AcoI YGGCCR 1 cut(s) 739
AcsI RAATTY 2 cut(s) 75, 550
AfaI GTAC 5 cut(s) 226, 278, 437, 484, 900
AfiI CCNNNNNNNGG 2 cut(s) 355, 599
AflIII ACRYGT 2 cut(s) 221, 613
AgeI ACCGGT 1 cut(s) 796
AjiI CACGTC 1 cut(s) 462
AleI CACNNNNGTG 2 cut(s) 758, 909
AloI GAACNNNNNNTCC 2 cut(s) 831, 863
AluBI AGCT 3 cut(s) 410, 505, 575
AluI AGCT 3 cut(s) 410, 505, 575
Alw21I GWGCWC 1 cut(s) 507
AlwI GGATC 1 cut(s) 584
Aor13HI TCCGGA 1 cut(s) 348
AoxI GGCC 1 cut(s) 739
ApeKI GCWGC 5 cut(s) 129, 242, 575, 578, 878
ApoI RAATTY 2 cut(s) 75, 550
AseI ATTAAT 1 cut(s) 951
AsiGI ACCGGT 1 cut(s) 796
AspLEI GCGC 3 cut(s) 368, 370, 454
AsuHPI GGTGA 3 cut(s) 130, 599, 761
AsuII TTCGAA 1 cut(s) 73
AxyI CCTNAGG 1 cut(s) 583
BaeI ACNNNNGTAYC 2 cut(s) 598, 631
BanII GRGCYC 1 cut(s) 507
BbsI GAAGAC 1 cut(s) 959
Bbv12I GWGCWC 1 cut(s) 507
BbvI GCAGC 5 cut(s) 141, 254, 562, 590, 865
BccI CCATC 3 cut(s) 98, 173, 802
BceAI ACGGC 1 cut(s) 579
BciVI GTATCC 3 cut(s) 356, 599, 833
BfaI CTAG 1 cut(s) 138
BfmI CTRYAG 2 cut(s) 576, 756
BfoI RGCGCY 1 cut(s) 455
BfuI GTATCC 3 cut(s) 356, 599, 833
BisI GCNGC 6 cut(s) 130, 243, 576, 579, 739, 879
BlpI GCTNAGC 1 cut(s) 495
BlsI GCNGC 6 cut(s) 131, 244, 577, 580, 740, 880
BmgBI CACGTC 1 cut(s) 462
BmrI ACTGGG 1 cut(s) 609
BmsI GCATC 1 cut(s) 865
BmuI ACTGGG 1 cut(s) 609
BpiI GAAGAC 1 cut(s) 959
Bpu1102I GCTNAGC 1 cut(s) 495
Bpu14I TTCGAA 1 cut(s) 73
BpuEI CTTGAG 1 cut(s) 440
BsaAI YACGTR 1 cut(s) 614
BsaWI WCCGGW 2 cut(s) 348, 796
Bsc4I CCNNNNNNNGG 2 cut(s) 355, 599
Bse118I RCCGGY 1 cut(s) 796
Bse1I ACTGG 2 cut(s) 120, 604
Bse21I CCTNAGG 1 cut(s) 583
BseAI TCCGGA 1 cut(s) 348
BseGI GGATG 2 cut(s) 534, 788
BseLI CCNNNNNNNGG 2 cut(s) 355, 599
BseNI ACTGG 2 cut(s) 120, 604
BsePI GCGCGC 1 cut(s) 366
BseXI GCAGC 5 cut(s) 141, 254, 562, 590, 865
BsgI GTGCAG 1 cut(s) 261
Bsh1236I CGCG 2 cut(s) 368, 738
Bsh1285I CGRYCG 1 cut(s) 337
BshFI GGCC 1 cut(s) 741
BshTI ACCGGT 1 cut(s) 796
BsiEI CGRYCG 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 507
BsiSI CCGG 2 cut(s) 349, 797
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 2 cut(s) 355, 599
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 1 cut(s) 741
Bsp119I TTCGAA 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 507
Bsp13I TCCGGA 1 cut(s) 348
Bsp143I GATC 3 cut(s) 120, 155, 589
Bsp1720I GCTNAGC 1 cut(s) 495
BspACI CCGC 2 cut(s) 151, 738
BspANI GGCC 1 cut(s) 741
BspEI TCCGGA 1 cut(s) 348
BspFNI CGCG 2 cut(s) 368, 738
BspMAI CTGCAG 1 cut(s) 580
BspPI GGATC 1 cut(s) 584
BspT104I TTCGAA 1 cut(s) 73
BsrFI RCCGGY 1 cut(s) 796
BsrI ACTGG 2 cut(s) 120, 604
BssAI RCCGGY 1 cut(s) 796
BssHII GCGCGC 1 cut(s) 366
BssMI GATC 3 cut(s) 120, 155, 589
Bst4CI ACNGT 3 cut(s) 164, 335, 757
BstBAI YACGTR 1 cut(s) 614
BstBI TTCGAA 1 cut(s) 73
BstC8I GCNNGC 1 cut(s) 368
BstDEI CTNAG 2 cut(s) 495, 583
BstF5I GGATG 2 cut(s) 534, 788
BstFNI CGCG 2 cut(s) 368, 738
BstH2I RGCGCY 1 cut(s) 455
BstHHI GCGC 3 cut(s) 368, 370, 454
BstKTI GATC 3 cut(s) 123, 158, 592
BstMBI GATC 3 cut(s) 120, 155, 589
BstMCI CGRYCG 1 cut(s) 337
BstMWI GCNNNNNNNGC 1 cut(s) 572
BstNSI RCATGY 1 cut(s) 225
BstSFI CTRYAG 2 cut(s) 576, 756
BstUI CGCG 2 cut(s) 368, 738
BstV1I GCAGC 5 cut(s) 141, 254, 562, 590, 865
BstV2I GAAGAC 1 cut(s) 959
BstXI CCANNNNNNTGG 1 cut(s) 413
Bsu36I CCTNAGG 1 cut(s) 583
BsuI GTATCC 3 cut(s) 356, 599, 833
BsuRI GGCC 1 cut(s) 741
BtrI CACGTC 1 cut(s) 462
BtsCI GGATG 2 cut(s) 534, 788
BtsI GCAGTG 1 cut(s) 484
BtsIMutI CAGTG 2 cut(s) 484, 753
Cac8I GCNNGC 1 cut(s) 368
CfoI GCGC 3 cut(s) 368, 370, 454
Cfr10I RCCGGY 1 cut(s) 796
Csp6I GTAC 5 cut(s) 225, 277, 436, 483, 899
CspAI ACCGGT 1 cut(s) 796
CspCI CAANNNNNGTGG 2 cut(s) 528, 563
CviAII CATG 5 cut(s) 222, 280, 354, 666, 701
CviJI RGCY 9 cut(s) 245, 403, 410, 499, 505, 566, 575, 581, 741
CviKI_1 RGCY 9 cut(s) 245, 403, 410, 499, 505, 566, 575, 581, 741
CviQI GTAC 5 cut(s) 225, 277, 436, 483, 899
DdeI CTNAG 2 cut(s) 495, 583
DpnI GATC 3 cut(s) 122, 157, 591
DpnII GATC 3 cut(s) 120, 155, 589
DraI TTTAAA 1 cut(s) 187
DrdI GACNNNNNNGTC 1 cut(s) 466
DseDI GACNNNNNNGTC 1 cut(s) 466
EaeI YGGCCR 1 cut(s) 739
Ecl136II GAGCTC 1 cut(s) 505
Eco24I GRGCYC 1 cut(s) 507
Eco53kI GAGCTC 1 cut(s) 505
Eco81I CCTNAGG 1 cut(s) 583
EcoICRI GAGCTC 1 cut(s) 505
EcoT38I GRGCYC 1 cut(s) 507
FaeI CATG 5 cut(s) 225, 283, 357, 669, 704
FaqI GGGAC 1 cut(s) 371
FatI CATG 5 cut(s) 221, 279, 353, 665, 700
Fnu4HI GCNGC 6 cut(s) 130, 243, 576, 579, 739, 879
FokI GGATG 2 cut(s) 541, 795
FriOI GRGCYC 1 cut(s) 507
Fsp4HI GCNGC 6 cut(s) 130, 243, 576, 579, 739, 879
FspBI CTAG 1 cut(s) 138
GlaI GCGC 3 cut(s) 367, 369, 453
GluI GCNGC 6 cut(s) 130, 243, 576, 579, 739, 879
HaeII RGCGCY 1 cut(s) 455
HaeIII GGCC 1 cut(s) 741
HapII CCGG 2 cut(s) 349, 797
HhaI GCGC 3 cut(s) 368, 370, 454
Hin1II CATG 5 cut(s) 225, 283, 357, 669, 704
Hin6I GCGC 3 cut(s) 366, 368, 452
HinP1I GCGC 3 cut(s) 366, 368, 452
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HindIII AAGCTT 1 cut(s) 408
HinfI GANTC 5 cut(s) 44, 70, 134, 310, 629
HpaI GTTAAC 1 cut(s) 172
HpaII CCGG 2 cut(s) 349, 797
HphI GGTGA 3 cut(s) 130, 599, 761
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 1 cut(s) 535
Hpy188III TCNNGA 9 cut(s) 48, 138, 349, 457, 714, 780, 866, 893, 929
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 1 cut(s) 855
HpyCH4III ACNGT 3 cut(s) 164, 335, 757
HpyCH4IV ACGT 5 cut(s) 60, 343, 461, 613, 956
HpyCH4V TGCA 6 cut(s) 218, 242, 326, 545, 578, 881
HpyF10VI GCNNNNNNNGC 1 cut(s) 572
HpyF3I CTNAG 2 cut(s) 495, 583
HpySE526I ACGT 5 cut(s) 60, 343, 461, 613, 956
Hsp92II CATG 5 cut(s) 225, 283, 357, 669, 704
HspAI GCGC 3 cut(s) 366, 368, 452
Kpn2I TCCGGA 1 cut(s) 348
KspAI GTTAAC 1 cut(s) 172
Kzo9I GATC 3 cut(s) 120, 155, 589
Lsp1109I GCAGC 5 cut(s) 141, 254, 562, 590, 865
LweI GCATC 1 cut(s) 865
MaeI CTAG 1 cut(s) 138
MaeII ACGT 5 cut(s) 60, 343, 461, 613, 956
MaeIII GTNAC 3 cut(s) 683, 749, 760
MalI GATC 3 cut(s) 122, 157, 591
MboI GATC 3 cut(s) 120, 155, 589
MboII GAAGA 4 cut(s) 272, 298, 956, 959
MfeI CAATTG 1 cut(s) 39
MhlI GDGCHC 1 cut(s) 507
MlyI GAGTC 3 cut(s) 128, 304, 623
MmeI TCCRAC 1 cut(s) 805
MroI TCCGGA 1 cut(s) 348
MseI TTAA 7 cut(s) 171, 186, 315, 554, 641, 951, 978
MslI CAYNNNNRTG 3 cut(s) 375, 758, 909
MspI CCGG 2 cut(s) 349, 797
MunI CAATTG 1 cut(s) 39
MvnI CGCG 2 cut(s) 368, 738
MwoI GCNNNNNNNGC 1 cut(s) 572
NdeII GATC 3 cut(s) 120, 155, 589
NlaIII CATG 5 cut(s) 225, 283, 357, 669, 704
NmuCI GTSAC 2 cut(s) 749, 760
NspI RCATGY 1 cut(s) 225
NspV TTCGAA 1 cut(s) 73
OliI CACNNNNGTG 2 cut(s) 758, 909
PauI GCGCGC 1 cut(s) 366
PciI ACATGT 1 cut(s) 221
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PfeI GAWTC 2 cut(s) 44, 70
PflMI CCANNNNNTGG 1 cut(s) 599
PinAI ACCGGT 1 cut(s) 796
PkrI GCNGC 6 cut(s) 131, 244, 577, 580, 740, 880
PleI GAGTC 3 cut(s) 128, 304, 623
PpsI GAGTC 3 cut(s) 128, 304, 623
Ppu21I YACGTR 1 cut(s) 614
PscI ACATGT 1 cut(s) 221
PshBI ATTAAT 1 cut(s) 951
PsiI TTATAA 2 cut(s) 101, 375
Psp124BI GAGCTC 1 cut(s) 507
Psp1406I AACGTT 1 cut(s) 60
PstI CTGCAG 1 cut(s) 580
PteI GCGCGC 1 cut(s) 366
RsaI GTAC 5 cut(s) 226, 278, 437, 484, 900
RsaNI GTAC 5 cut(s) 225, 277, 436, 483, 899
RseI CAYNNNNRTG 3 cut(s) 375, 758, 909
SacI GAGCTC 1 cut(s) 507
SaqAI TTAA 7 cut(s) 171, 186, 315, 554, 641, 951, 978
SatI GCNGC 6 cut(s) 130, 243, 576, 579, 739, 879
Sau3AI GATC 3 cut(s) 120, 155, 589
SchI GAGTC 3 cut(s) 128, 304, 623
SduI GDGCHC 1 cut(s) 507
SfaNI GCATC 1 cut(s) 865
SfcI CTRYAG 2 cut(s) 576, 756
SfuI TTCGAA 1 cut(s) 73
SmiMI CAYNNNNRTG 3 cut(s) 375, 758, 909
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
SsiI CCGC 2 cut(s) 151, 738
SspI AATATT 1 cut(s) 211
SspMI CTAG 1 cut(s) 138
SstI GAGCTC 1 cut(s) 507
TaaI ACNGT 3 cut(s) 164, 335, 757
TaiI ACGT 5 cut(s) 63, 346, 464, 616, 959
TaqI TCGA 2 cut(s) 73, 158
TatI WGTACW 3 cut(s) 276, 435, 898
TauI GCSGC 1 cut(s) 741
TfiI GAWTC 2 cut(s) 44, 70
Tru1I TTAA 7 cut(s) 171, 186, 315, 554, 641, 951, 978
Tru9I TTAA 7 cut(s) 171, 186, 315, 554, 641, 951, 978
TscAI CASTG 2 cut(s) 484, 760
TseFI GTSAC 2 cut(s) 749, 760
TseI GCWGC 5 cut(s) 129, 242, 575, 578, 878
Tsp45I GTSAC 2 cut(s) 749, 760
TspDTI ATGAA 1 cut(s) 126
TspGWI ACGGA 2 cut(s) 651, 951
TspRI CASTG 2 cut(s) 484, 760
Van91I CCANNNNNTGG 1 cut(s) 599
VspI ATTAAT 1 cut(s) 951
XapI RAATTY 2 cut(s) 75, 550
XbaI TCTAGA 1 cut(s) 137
XceI RCATGY 1 cut(s) 225
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.