Rh5DG014400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
1072682 .. 1073104
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG014400.1

Sequence Viewer

Length: 336 bp
ATGCAAACTCTCTCAGTTGATGAGGCATCCAAGTGTGCATTTGATTTTATCAAGGACAATGCTGATGATCTGCGGTGCTATCTTTTCATCATAGGAAAGCACAATGAAGAGTTGAAGATTTGGCTTGTTGAGAAACAACAGAGGAAGCCAGAGCCAAAGCGTACAGAGATCAAGACTTGGAAGTTGATTGGGAAAGGAACTAAATCTGCCGAGGATCTAATGAGAAATCATCATAACCGGATATCTGAAGAAGAAGGACTTACGATGGCAAGGAGGACTTTACTAGCAATGGCATTGACAAACCCCTCGATTGGGGGATATATTATTAGTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.79

Weight (kDa)

8.58

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 73
AclWI GGATC 1 cut(s) 222
AcuI CTGAAG 1 cut(s) 267
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 2 cut(s) 311, 312
AgsI TTSAA 1 cut(s) 115
AlwI GGATC 1 cut(s) 222
BccI CCATC 1 cut(s) 259
BfaI CTAG 1 cut(s) 284
BmsI GCATC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 237
Bsc4I CCNNNNNNNGG 2 cut(s) 311, 312
Bse3DI GCAATG 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 1 cut(s) 26
BseLI CCNNNNNNNGG 2 cut(s) 311, 312
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 1 cut(s) 27
BsiSI CCGG 1 cut(s) 238
BslI CCNNNNNNNGG 2 cut(s) 311, 312
Bsp143I GATC 3 cut(s) 67, 168, 214
BspACI CCGC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 26
BspPI GGATC 1 cut(s) 222
BsrDI GCAATG 1 cut(s) 294
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 3 cut(s) 67, 168, 214
Bst6I CTCTTC 1 cut(s) 102
BstDEI CTNAG 1 cut(s) 13
BstF5I GGATG 1 cut(s) 26
BstKTI GATC 3 cut(s) 70, 171, 217
BstMBI GATC 3 cut(s) 67, 168, 214
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BtsCI GGATG 1 cut(s) 26
Csp6I GTAC 1 cut(s) 162
CviJI RGCY 3 cut(s) 124, 148, 154
CviKI_1 RGCY 3 cut(s) 124, 148, 154
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 1 cut(s) 13
DpnI GATC 3 cut(s) 69, 170, 216
DpnII GATC 3 cut(s) 67, 168, 214
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco32I GATATC 1 cut(s) 243
Eco57I CTGAAG 1 cut(s) 267
EcoRV GATATC 1 cut(s) 243
FaiI YATR 3 cut(s) 92, 234, 321
FalI AAGNNNNNCTT 4 cut(s) 243, 275, 262, 294
FokI GGATG 1 cut(s) 13
FspBI CTAG 1 cut(s) 284
HapII CCGG 1 cut(s) 238
HpaII CCGG 1 cut(s) 238
Hpy188I TCNGA 1 cut(s) 247
Hpy188III TCNNGA 1 cut(s) 172
HpyAV CCTTC 1 cut(s) 248
HpyCH4V TGCA 2 cut(s) 4, 38
HpyF3I CTNAG 1 cut(s) 13
Kzo9I GATC 3 cut(s) 67, 168, 214
LpnPI CCDG 2 cut(s) 162, 251
LweI GCATC 1 cut(s) 35
MaeI CTAG 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 329
MalI GATC 3 cut(s) 69, 170, 216
MboI GATC 3 cut(s) 67, 168, 214
MboII GAAGA 4 cut(s) 119, 127, 260, 263
MflI RGATCY 1 cut(s) 214
MnlI CCTC 5 cut(s) 16, 135, 205, 267, 316
MslI CAYNNNNRTG 1 cut(s) 31
MspI CCGG 1 cut(s) 238
NdeII GATC 3 cut(s) 67, 168, 214
NmeAIII GCCGAG 1 cut(s) 235
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
RseI CAYNNNNRTG 1 cut(s) 31
Sau3AI GATC 3 cut(s) 67, 168, 214
SfaNI GCATC 1 cut(s) 35
SmiMI CAYNNNNRTG 1 cut(s) 31
SsiI CCGC 1 cut(s) 73
SspMI CTAG 1 cut(s) 284
TaqI TCGA 1 cut(s) 308
TspDTI ATGAA 2 cut(s) 76, 120
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.