Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0013949

Physical Location & Seq

Genomic Coordinates Forward (+)

36740535 .. 36742684

Gene Structure 2150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0257600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCGACATTGGATTCCGACGTGCCCATGGTTCCGGCAGGCGAGGGCTCGAGCAGTGCTGGCCCTTCTTCGGTCAAGAAATCCAAGCGATTCGAGATCAAGAAGTGGAATGCTGTGGCTCTCTGGGCTTGGGATATTGTTGTGGATAACTGTGCTATATGCAGAAACCATATCATGGATCTTTGCATTGAGTGCCAAGCAAACCAGGCAAGCGCAACAAGCGAGGAGTGTACAGTTGCTTGGGGGGTTTGTAACCATGCATTTCACTTTCACTGCATAAGCAGATGGCTCAAGACCCGCCAAGTGTGTCCATTAGATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009889 GO:0010033 GO:0010150 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

117

Amino Acids

13.13

Weight (kDa)

6.17

Isoelectric Point (pI)

55.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	49 - 107	1.9e-25	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	49 - 113	1e-12	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01250
fragaria_vesca	FvH4_7g15350
malus_domestica	MD01G1071300.v1.1 MD07G1131400.v1.1
prunus_persica	Prupe.2G177400_v2.0.a1
pyrus_communis	pycom01g10030
rosa_chinensis	RchiOBHm_Chr1g0357671
rosa_laevigata	RLG00000028008
rosa_multiflora	Rmu_co8407323.1_g000001 Rmu_ssc0000425.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298610
rosa_rugosa	Rorug01G0257600
rosa_samantha	Rh1AG271600 Rh1BG238700 Rh1CG255500 Rh1DG267100
rosa_wichuraiana	Rw1G024220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	175
AciI	CCGC	1 cut(s)	298
AclWI	GGATC	1 cut(s)	186
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	2 cut(s)	70, 175
AjiI	CACGTC	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	204
AlwI	GGATC	1 cut(s)	186
Ama87I	CYCGRG	1 cut(s)	49
AoxI	GGCC	1 cut(s)	61
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	62
AvaI	CYCGRG	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	27
BanII	GRGCYC	1 cut(s)	50
BccI	CCATC	1 cut(s)	279
BciT130I	CCWGG	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	206
BmeT110I	CYCGRG	1 cut(s)	49
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 175
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	27
BseLI	CCNNNNNNNGG	2 cut(s)	70, 175
BseRI	GAGGAG	1 cut(s)	239
BseSI	GKGCMC	1 cut(s)	27
BshFI	GGCC	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	35
BslI	CCNNNNNNNGG	2 cut(s)	70, 175
BsmI	GAATGC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	63
BsoBI	CYCGRG	1 cut(s)	49
Bsp1286I	GDGCHC	2 cut(s)	27, 50
Bsp1407I	TGTACA	1 cut(s)	230
Bsp143I	GATC	2 cut(s)	96, 178
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	1 cut(s)	298
BspANI	GGCC	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	186
BsrGI	TGTACA	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	2 cut(s)	96, 178
BssT1I	CCWWGG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	2 cut(s)	152, 235
BstAPI	GCANNNNNTGC	1 cut(s)	192
BstAUI	TGTACA	1 cut(s)	230
BstC8I	GCNNGC	3 cut(s)	40, 61, 211
BstDSI	CCRYGG	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	2 cut(s)	99, 181
BstMBI	GATC	2 cut(s)	96, 178
BstMWI	GCNNNNNNNGC	5 cut(s)	60, 125, 192, 206, 219
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	204
BstSLI	GKGCMC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	63
BtgI	CCRYGG	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	22
BtsI	GCAGTG	2 cut(s)	61, 271
BtsIMutI	CAGTG	2 cut(s)	61, 271
Cac8I	GCNNGC	3 cut(s)	40, 61, 211
CfoI	GCGC	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	3 cut(s)	28, 175, 257
CviJI	RGCY	5 cut(s)	48, 63, 119, 128, 289
CviKI_1	RGCY	5 cut(s)	48, 63, 119, 128, 289
CviQI	GTAC	1 cut(s)	231
DpnI	GATC	2 cut(s)	98, 180
DpnII	GATC	2 cut(s)	96, 178
Eco130I	CCWWGG	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	50
Eco88I	CYCGRG	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	27
EcoT22I	ATGCAT	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	3 cut(s)	31, 178, 260
FaiI	YATR	8 cut(s)	29, 158, 160, 171, 176, 258, 278, 345
FatI	CATG	3 cut(s)	27, 174, 256
FauI	CCCGC	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	50
GlaI	GCGC	1 cut(s)	214
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	1 cut(s)	35
HhaI	GCGC	1 cut(s)	215
Hin1II	CATG	3 cut(s)	31, 178, 260
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HinfI	GANTC	2 cut(s)	14, 90
HpaII	CCGG	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	2 cut(s)	19, 339
Hpy188III	TCNNGA	4 cut(s)	76, 94, 100, 292
Hpy8I	GTNNAC	1 cut(s)	231
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	1 cut(s)	75
HpyCH4III	ACNGT	2 cut(s)	152, 235
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	4 cut(s)	162, 186, 260, 276
HpyF10VI	GCNNNNNNNGC	5 cut(s)	60, 125, 192, 206, 219
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	3 cut(s)	31, 178, 260
HspAI	GCGC	1 cut(s)	213
Kzo9I	GATC	2 cut(s)	96, 178
LpnPI	CCDG	6 cut(s)	24, 45, 48, 109, 191, 218
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	2 cut(s)	98, 180
MboI	GATC	2 cut(s)	96, 178
MboII	GAAGA	1 cut(s)	60
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	2 cut(s)	27, 50
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	2 cut(s)	37, 217
Mph1103I	ATGCAT	1 cut(s)	262
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	206
Mva1269I	GAATGC	1 cut(s)	115
MvaI	CCWGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	5 cut(s)	60, 125, 192, 206, 219
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	2 cut(s)	96, 178
NlaIII	CATG	3 cut(s)	31, 178, 260
NlaIV	GGNNCC	1 cut(s)	33
NsiI	ATGCAT	1 cut(s)	262
PaeR7I	CTCGAG	1 cut(s)	49
PctI	GAATGC	1 cut(s)	115
PfeI	GAWTC	2 cut(s)	14, 90
PflMI	CCANNNNNTGG	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	62
PspXI	VCTCGAGB	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
Sau3AI	GATC	2 cut(s)	96, 178
Sau96I	GGNCC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	206
SduI	GDGCHC	2 cut(s)	27, 50
SetI	ASST	1 cut(s)	24
Sfr274I	CTCGAG	1 cut(s)	49
SlaI	CTCGAG	1 cut(s)	49
SmlI	CTYRAG	2 cut(s)	49, 290
SmoI	CTYRAG	2 cut(s)	49, 290
SsiI	CCGC	1 cut(s)	298
StyD4I	CCNGG	1 cut(s)	204
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	152, 235
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	2 cut(s)	50, 93
TaqII	GACCGA	1 cut(s)	61
TatI	WGTACW	1 cut(s)	230
TfiI	GAWTC	2 cut(s)	14, 90
TscAI	CASTG	2 cut(s)	61, 278
TspRI	CASTG	2 cut(s)	61, 278
Van91I	CCANNNNNTGG	1 cut(s)	175
XhoI	CTCGAG	1 cut(s)	49
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.