Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0013949

Physical Location & Seq

Genomic Coordinates Forward (+)

13368494 .. 13370402

Gene Structure 1909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g15350.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGAAGACGATTGGGATCTCACCGCCGTGGTGAGAGGCTGCTCCACCGCCACTACCACCACCACCACCACCACCACCACCACCACCACAAAGCCAACCACCTCTTTCATCTCAGACCTTCATCACCACTTCCACTCTAGCCCTCTCCTCTCTTCTTCATTTGGTCAACAGGGCTTTGTCTCCAACAACACTAGTCAAACCCAAACACAAACCCAAAGCTTCTCTGTTCTTCCTATTGTTCCAGATCCCATTAAACCCACAAGTGCAATTGAGGAACTGCATGATCTTTACAAGCCATTCTTCCCCAAATCTCATCACAAGATTCACACCCCATCTCTTCTTTCTCCTCCCCCACAAATCACTCCACAACCTAATTTCTCCTCCCATCAACAACTCCACAAACATCAGCCTAAGCTTTCTGCCACTAATACCACTCAACGCTCCAAAAAGAGAAAGAACCTGCTTAAGAAAGTGTGCCAAGTACCAGCAGAGTCTCTGTCTTCTGATGTTTGGGCATGGCGTAAATACGGACAGAAACCCATCAAGGGATCACCATATCCGAGAGGCTACTACAGATGCAGCAGCTCAAAGGGTTGTATGGCCCGGAAGCAAGTGGAGCGGCACAGATCCGACCCGGGAATGTTCATAGTCACCTACACGGCGGAGCACAACCACCCTGCACCAACTCACCGCAACTCTCTTGCTGGGTCCACGCGTCACAAGCCTGTCTCTTCTCCTCAGTCGGGCTCCGTCACAGGCGGTGACTCTACCAAGCCCAAGGGTGGCTCTCCGTCGTCACCGGCCACGTCAGCGGAGGAGGAGGTTGGTCGGAGCGTTACAATGATGGATGCTAAAGAAGAGAAACAGAGTCCTCTGGCTGATGAAGACGAAACAGAGTTTTTTCGGGTGTGTGATACGATTGTGACCGATGATTTCTTCGTGGGTTTGGATGGACTTGCCGGAGACTACTTTTCCGATCACTCTACGGCGAGCTTCGGCGGCCCATGGAGTACTGCCACCGCCGCCAGTAGTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009889 GO:0010033 GO:0010150 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

346

Amino Acids

37.72

Weight (kDa)

8.5

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	169 - 226	1.9e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01250
fragaria_vesca	FvH4_7g15350
malus_domestica	MD01G1071300.v1.1 MD07G1131400.v1.1
prunus_persica	Prupe.2G177400_v2.0.a1
pyrus_communis	pycom01g10030
rosa_chinensis	RchiOBHm_Chr1g0357671
rosa_laevigata	RLG00000028008
rosa_multiflora	Rmu_co8407323.1_g000001 Rmu_ssc0000425.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298610
rosa_rugosa	Rorug01G0257600
rosa_samantha	Rh1AG271600 Rh1BG238700 Rh1CG255500 Rh1DG267100
rosa_wichuraiana	Rw1G024220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	468
AccBSI	CCGCTC	1 cut(s)	619
AccII	CGCG	1 cut(s)	715
AclWI	GGATC	4 cut(s)	24, 239, 556, 621
AcoI	YGGCCR	1 cut(s)	801
AfaI	GTAC	2 cut(s)	483, 1012
AfiI	CCNNNNNNNGG	3 cut(s)	545, 743, 782
AflII	CTTAAG	1 cut(s)	464
AflIII	ACRYGT	1 cut(s)	713
AhlI	ACTAGT	1 cut(s)	191
AjiI	CACGTC	1 cut(s)	807
AleI	CACNNNNGTG	1 cut(s)	26
AluBI	AGCT	4 cut(s)	219, 415, 585, 993
AluI	AGCT	4 cut(s)	219, 415, 585, 993
Alw21I	GWGCWC	1 cut(s)	669
Alw26I	GTCTC	4 cut(s)	184, 498, 733, 957
AlwI	GGATC	4 cut(s)	24, 239, 556, 621
Ama87I	CYCGRG	1 cut(s)	634
AoxI	GGCC	3 cut(s)	600, 801, 1000
ApeKI	GCWGC	3 cut(s)	39, 579, 582
AspS9I	GGNCC	3 cut(s)	601, 708, 1001
AsuC2I	CCSGG	3 cut(s)	604, 635, 636
AsuHPI	GGTGA	8 cut(s)	13, 43, 116, 543, 643, 680, 773, 789
AvaI	CYCGRG	1 cut(s)	634
AvaII	GGWCC	1 cut(s)	708
BaeI	ACNNNNGTAYC	2 cut(s)	906, 939
BanII	GRGCYC	1 cut(s)	749
BbsI	GAAGAC	3 cut(s)	12, 492, 891
Bbv12I	GWGCWC	1 cut(s)	669
BbvI	GCAGC	3 cut(s)	26, 591, 594
BccI	CCATC	5 cut(s)	340, 393, 548, 838, 944
BceAI	ACGGC	3 cut(s)	11, 675, 1002
BcnI	CCSGG	3 cut(s)	604, 635, 636
BcoDI	GTCTC	4 cut(s)	184, 498, 733, 957
BcuI	ACTAGT	1 cut(s)	191
BfaI	CTAG	2 cut(s)	138, 192
BfmI	CTRYAG	1 cut(s)	571
BfrI	CTTAAG	1 cut(s)	464
BfuAI	ACCTGC	1 cut(s)	468
BisI	GCNGC	6 cut(s)	40, 580, 583, 620, 1000, 1023
BlsI	GCNGC	6 cut(s)	41, 581, 584, 621, 1001, 1024
BmcAI	AGTACT	1 cut(s)	1012
Bme1390I	CCNGG	3 cut(s)	604, 635, 636
Bme18I	GGWCC	1 cut(s)	708
BmeT110I	CYCGRG	1 cut(s)	634
BmgBI	CACGTC	1 cut(s)	807
BmgT120I	GGNCC	3 cut(s)	601, 708, 1001
BmiI	GGNNCC	2 cut(s)	709, 748
BmrFI	CCNGG	3 cut(s)	604, 635, 636
BmsI	GCATC	2 cut(s)	566, 838
BpiI	GAAGAC	3 cut(s)	12, 492, 891
Bpu10I	CCTNAGC	1 cut(s)	411
BpuMI	CCSGG	3 cut(s)	604, 635, 636
BsaBI	GATNNNNATC	1 cut(s)	15
BsaJI	CCNNGG	4 cut(s)	27, 634, 777, 1004
Bsc4I	CCNNNNNNNGG	3 cut(s)	545, 743, 782
Bse118I	RCCGGY	1 cut(s)	799
Bse1I	ACTGG	1 cut(s)	1026
Bse8I	GATNNNNATC	1 cut(s)	15
BseDI	CCNNGG	4 cut(s)	27, 634, 777, 1004
BseGI	GGATG	2 cut(s)	853, 955
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	3 cut(s)	545, 743, 782
BseMII	CTCAG	2 cut(s)	126, 752
BseNI	ACTGG	1 cut(s)	1026
BseRI	GAGGAG	6 cut(s)	137, 336, 370, 726, 830, 833
BseXI	GCAGC	3 cut(s)	26, 591, 594
BseYI	CCCAGC	1 cut(s)	704
BsgI	GTGCAG	1 cut(s)	663
Bsh1236I	CGCG	1 cut(s)	715
BshFI	GGCC	3 cut(s)	602, 803, 1002
BsiHKAI	GWGCWC	1 cut(s)	669
BsiHKCI	CYCGRG	1 cut(s)	634
BsiSI	CCGG	4 cut(s)	604, 635, 800, 960
BslI	CCNNNNNNNGG	3 cut(s)	545, 743, 782
BsmAI	GTCTC	4 cut(s)	184, 498, 733, 957
BsnI	GGCC	3 cut(s)	602, 803, 1002
BsoBI	CYCGRG	1 cut(s)	634
Bsp1286I	GDGCHC	2 cut(s)	669, 749
Bsp143I	GATC	6 cut(s)	16, 244, 283, 548, 626, 976
Bsp19I	CCATGG	1 cut(s)	1004
BspANI	GGCC	3 cut(s)	602, 803, 1002
BspCNI	CTCAG	2 cut(s)	125, 751
BspFNI	CGCG	1 cut(s)	715
BspLI	GGNNCC	2 cut(s)	709, 748
BspMI	ACCTGC	1 cut(s)	468
BspPI	GGATC	4 cut(s)	24, 239, 556, 621
BspTI	CTTAAG	1 cut(s)	464
BsrBI	CCGCTC	1 cut(s)	619
BsrFI	RCCGGY	1 cut(s)	799
BsrI	ACTGG	1 cut(s)	1026
BssAI	RCCGGY	1 cut(s)	799
BssECI	CCNNGG	4 cut(s)	27, 634, 777, 1004
BssMI	GATC	6 cut(s)	16, 244, 283, 548, 626, 976
BssT1I	CCWWGG	2 cut(s)	777, 1004
Bst6I	CTCTTC	4 cut(s)	157, 342, 736, 852
BstAFI	CTTAAG	1 cut(s)	464
BstC8I	GCNNGC	1 cut(s)	991
BstDEI	CTNAG	3 cut(s)	112, 411, 738
BstDSI	CCRYGG	2 cut(s)	27, 1004
BstF5I	GGATG	2 cut(s)	853, 955
BstFNI	CGCG	1 cut(s)	715
BstKTI	GATC	6 cut(s)	19, 247, 286, 551, 629, 979
BstMAI	GTCTC	4 cut(s)	184, 498, 733, 957
BstMBI	GATC	6 cut(s)	16, 244, 283, 548, 626, 976
BstMWI	GCNNNNNNNGC	5 cut(s)	616, 721, 809, 999, 1022
BstSCI	CCNGG	3 cut(s)	602, 633, 634
BstSFI	CTRYAG	1 cut(s)	571
BstUI	CGCG	1 cut(s)	715
BstV1I	GCAGC	3 cut(s)	26, 591, 594
BstV2I	GAAGAC	3 cut(s)	12, 492, 891
BstX2I	RGATCY	3 cut(s)	16, 244, 626
BstYI	RGATCY	3 cut(s)	16, 244, 626
BsuRI	GGCC	3 cut(s)	602, 803, 1002
BtgI	CCRYGG	2 cut(s)	27, 1004
BtrI	CACGTC	1 cut(s)	807
BtsCI	GGATG	2 cut(s)	853, 955
BveI	ACCTGC	1 cut(s)	468
Cac8I	GCNNGC	1 cut(s)	991
Cfr10I	RCCGGY	1 cut(s)	799
Cfr13I	GGNCC	3 cut(s)	601, 708, 1001
Cfr9I	CCCGGG	1 cut(s)	634
CseI	GACGC	1 cut(s)	704
Csp6I	GTAC	2 cut(s)	482, 1011
CviAII	CATG	3 cut(s)	281, 516, 1005
CviQI	GTAC	2 cut(s)	482, 1011
DdeI	CTNAG	3 cut(s)	112, 411, 738
DpnI	GATC	6 cut(s)	18, 246, 285, 550, 628, 978
DpnII	GATC	6 cut(s)	16, 244, 283, 548, 626, 976
EaeI	YGGCCR	1 cut(s)	801
Eam1104I	CTCTTC	4 cut(s)	157, 342, 736, 852
EarI	CTCTTC	4 cut(s)	157, 342, 736, 852
EciI	GGCGGA	1 cut(s)	677
Eco130I	CCWWGG	2 cut(s)	777, 1004
Eco24I	GRGCYC	1 cut(s)	749
Eco47I	GGWCC	1 cut(s)	708
Eco88I	CYCGRG	1 cut(s)	634
EcoT14I	CCWWGG	2 cut(s)	777, 1004
EcoT38I	GRGCYC	1 cut(s)	749
ErhI	CCWWGG	2 cut(s)	777, 1004
FaeI	CATG	3 cut(s)	284, 519, 1008
FaiI	YATR	6 cut(s)	282, 517, 556, 599, 647, 1006
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FatI	CATG	3 cut(s)	280, 515, 1004
Fnu4HI	GCNGC	6 cut(s)	40, 580, 583, 620, 1000, 1023
FokI	GGATG	2 cut(s)	860, 962
FriOI	GRGCYC	1 cut(s)	749
Fsp4HI	GCNGC	6 cut(s)	40, 580, 583, 620, 1000, 1023
FspBI	CTAG	2 cut(s)	138, 192
GluI	GCNGC	6 cut(s)	40, 580, 583, 620, 1000, 1023
GsaI	CCCAGC	1 cut(s)	708
HaeIII	GGCC	3 cut(s)	602, 803, 1002
HapII	CCGG	4 cut(s)	604, 635, 800, 960
HgaI	GACGC	1 cut(s)	704
Hin1II	CATG	3 cut(s)	284, 519, 1008
HincII	GTYRAC	1 cut(s)	167
HindII	GTYRAC	1 cut(s)	167
HindIII	AAGCTT	2 cut(s)	217, 413
HinfI	GANTC	4 cut(s)	322, 491, 764, 868
HpaII	CCGG	4 cut(s)	604, 635, 800, 960
HphI	GGTGA	8 cut(s)	13, 43, 116, 543, 643, 680, 773, 789
Hpy166II	GTNNAC	2 cut(s)	167, 711
Hpy188I	TCNGA	7 cut(s)	115, 505, 561, 631, 831, 976, 1037
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	2 cut(s)	167, 711
Hpy99I	CGWCG	1 cut(s)	796
HpyAV	CCTTC	1 cut(s)	128
HpyCH4IV	ACGT	1 cut(s)	806
HpyCH4V	TGCA	4 cut(s)	266, 280, 579, 680
HpyF10VI	GCNNNNNNNGC	5 cut(s)	616, 721, 809, 999, 1022
HpyF3I	CTNAG	3 cut(s)	112, 411, 738
HpySE526I	ACGT	1 cut(s)	806
Hsp92II	CATG	3 cut(s)	284, 519, 1008
Kzo9I	GATC	6 cut(s)	16, 244, 283, 548, 626, 976
LmnI	GCTCC	6 cut(s)	47, 446, 616, 664, 752, 831
Lsp1109I	GCAGC	3 cut(s)	26, 591, 594
LweI	GCATC	2 cut(s)	566, 838
MaeI	CTAG	2 cut(s)	138, 192
MaeII	ACGT	1 cut(s)	806
MaeIII	GTNAC	7 cut(s)	649, 716, 751, 761, 795, 835, 922
MalI	GATC	6 cut(s)	18, 246, 285, 550, 628, 978
MbiI	CCGCTC	1 cut(s)	619
MboI	GATC	6 cut(s)	16, 244, 283, 548, 626, 976
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	3 cut(s)	16, 244, 626
MhlI	GDGCHC	2 cut(s)	669, 749
MluCI	AATT	2 cut(s)	267, 373
MluI	ACGCGT	1 cut(s)	713
MlyI	GAGTC	3 cut(s)	500, 758, 877
MmeI	TCCRAC	3 cut(s)	207, 654, 809
MseI	TTAA	2 cut(s)	252, 465
MslI	CAYNNNNRTG	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	812
MspCI	CTTAAG	1 cut(s)	464
MspI	CCGG	4 cut(s)	604, 635, 800, 960
MspR9I	CCNGG	3 cut(s)	604, 635, 636
MunI	CAATTG	1 cut(s)	267
MvnI	CGCG	1 cut(s)	715
MwoI	GCNNNNNNNGC	5 cut(s)	616, 721, 809, 999, 1022
NciI	CCSGG	3 cut(s)	604, 635, 636
NcoI	CCATGG	1 cut(s)	1004
NdeII	GATC	6 cut(s)	16, 244, 283, 548, 626, 976
NlaIII	CATG	3 cut(s)	284, 519, 1008
NlaIV	GGNNCC	2 cut(s)	709, 748
NmuCI	GTSAC	6 cut(s)	649, 716, 751, 761, 795, 922
OliI	CACNNNNGTG	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	6 cut(s)	41, 581, 584, 621, 1001, 1024
PleI	GAGTC	3 cut(s)	499, 758, 876
PpsI	GAGTC	3 cut(s)	499, 758, 876
PspFI	CCCAGC	1 cut(s)	704
PspN4I	GGNNCC	2 cut(s)	709, 748
PspPI	GGNCC	3 cut(s)	601, 708, 1001
PsuI	RGATCY	3 cut(s)	16, 244, 626
RsaI	GTAC	2 cut(s)	483, 1012
RsaNI	GTAC	2 cut(s)	482, 1011
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	252, 465
SatI	GCNGC	6 cut(s)	40, 580, 583, 620, 1000, 1023
Sau3AI	GATC	6 cut(s)	16, 244, 283, 548, 626, 976
Sau96I	GGNCC	3 cut(s)	601, 708, 1001
ScaI	AGTACT	1 cut(s)	1012
SchI	GAGTC	3 cut(s)	500, 758, 877
ScrFI	CCNGG	3 cut(s)	604, 635, 636
SduI	GDGCHC	2 cut(s)	669, 749
SfaNI	GCATC	2 cut(s)	566, 838
SfcI	CTRYAG	1 cut(s)	571
SinI	GGWCC	1 cut(s)	708
SmaI	CCCGGG	1 cut(s)	636
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
SpeI	ACTAGT	1 cut(s)	191
Sse9I	AATT	2 cut(s)	267, 373
SspMI	CTAG	2 cut(s)	138, 192
StyD4I	CCNGG	3 cut(s)	602, 633, 634
StyI	CCWWGG	2 cut(s)	777, 1004
TaiI	ACGT	1 cut(s)	809
TaqII	GACCGA	1 cut(s)	941
TasI	AATT	2 cut(s)	267, 373
TatI	WGTACW	1 cut(s)	1010
TauI	GCSGC	3 cut(s)	622, 1002, 1025
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	2 cut(s)	252, 465
Tru9I	TTAA	2 cut(s)	252, 465
TseFI	GTSAC	6 cut(s)	649, 716, 751, 761, 795, 922
TseI	GCWGC	3 cut(s)	39, 579, 582
Tsp45I	GTSAC	6 cut(s)	649, 716, 751, 761, 795, 922
TspDTI	ATGAA	5 cut(s)	97, 110, 147, 634, 897
TspGWI	ACGGA	3 cut(s)	543, 739, 780
TspMI	CCCGGG	1 cut(s)	634
Vha464I	CTTAAG	1 cut(s)	464
VpaK11BI	GGWCC	1 cut(s)	708
XmaI	CCCGGG	1 cut(s)	634
XspI	CTAG	2 cut(s)	138, 192
ZrmI	AGTACT	1 cut(s)	1012

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.