Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0013949

Physical Location & Seq

Genomic Coordinates Forward (+)

52036913 .. 52038814

Gene Structure 1902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG255500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAAGACGATTGGGATCTCACCGCCGTGGTCAGAGGCTGCTCCACCGTCCCAACCACCACCACCAACAAGCCAACCAACCCTTTCATCGCAGATCACTTCCACACAAGCCCTCTCCTGTCTTCATTTGGTCAACAGGGTTTTGTCTCCGACTACACTACTCAGACCTTCTCTGTTCTTCCTCTTCCTCCAGATCCCATTAAACCCACAAGTACAATTGAGGAACTGCATGATCTTTACAAGCCATTCTTCCCCAAATCTCAACAAACCCCTTCTCTTCTTTCTCCACCCCCACAAATCACACCACAGCCCACTTTCTCTTCCCCTCAACCTCTCCACAGACATCAACAACATCAGCCTAAGCTTTCTGCTACAAATCCCCAGCGCTCCAAAAAGAGGTACATGATTGCAACTTTGCTCTTAGATCACTACTTTTGTTTGCTTTGCTTCATGAAGTTGGTTTATTTATGGTTTCTGAATCTTTTCCATTTCTTTTGCAGAAAGAACCAGCTTAAGAAGGTGTGCCAAGTACCAGCGGAGTCTTTGTCTTCTGATGTGTGGGCATGGCGTAAATACGGACAGAAACCCATCAAGGGCTCACCATATCCGAGAGGTTACTATAGATGCAGCAGCTCAAAGGGTTGTATGGCCCGGAAGCAAGTGGAGCGGAACAGATCCGACCCGGGAATGTTCATAGTCACCTACACGGCGGAGCACAACCACCCTGCACCGACACACCGCAACTCGCTTGCTGGGTCCACGCGTCACAAGCCTGTCTCTTCTCCCCAGTCGGGTTCCGTCACGGGCGGTGACTGTACCAAACCCAAGGGCTGCTCTCCGTCGCCGACCACGTCGGCGGAGGAGGAGCTTGGTCGGAGCACAACAAGGATGGAAGCGAAAGATGAAAAACAGAGTCCTATGGCGGATGAAGACGAAACAGAGTACTTTGGGGTGTGTGATACGATTGTGAGCGATGATTTCTTTGTGGGTTTGGAAGGTCTCGCCGGAGATTACTTTTCCGATCAGTTTACGGTCAGCTTCGGCGGCCCATGGAGTTCTGGTAGTGCTGCCACCGCCGCCAGTAGTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009889 GO:0010033 GO:0010150 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

363

Amino Acids

40.43

Weight (kDa)

7.99

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	185 - 242	1.2e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01250
fragaria_vesca	FvH4_7g15350
malus_domestica	MD01G1071300.v1.1 MD07G1131400.v1.1
prunus_persica	Prupe.2G177400_v2.0.a1
pyrus_communis	pycom01g10030
rosa_chinensis	RchiOBHm_Chr1g0357671
rosa_laevigata	RLG00000028008
rosa_multiflora	Rmu_co8407323.1_g000001 Rmu_ssc0000425.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298610
rosa_rugosa	Rorug01G0257600
rosa_samantha	Rh1AG271600 Rh1BG238700 Rh1CG255500 Rh1DG267100
rosa_wichuraiana	Rw1G024220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	667
AccII	CGCG	1 cut(s)	763
AclWI	GGATC	3 cut(s)	24, 188, 669
AfaI	GTAC	5 cut(s)	214, 401, 531, 817, 944
AfeI	AGCGCT	1 cut(s)	386
AfiI	CCNNNNNNNGG	3 cut(s)	396, 593, 791
AflII	CTTAAG	1 cut(s)	512
AflIII	ACRYGT	1 cut(s)	761
AjiI	CACGTC	1 cut(s)	852
AleI	CACNNNNGTG	1 cut(s)	26
AluBI	AGCT	5 cut(s)	364, 511, 633, 868, 1038
AluI	AGCT	5 cut(s)	364, 511, 633, 868, 1038
Alw21I	GWGCWC	2 cut(s)	717, 881
Alw26I	GTCTC	3 cut(s)	151, 781, 1004
AlwI	GGATC	3 cut(s)	24, 188, 669
AlwNI	CAGNNNCTG	1 cut(s)	39
Ama87I	CYCGRG	1 cut(s)	682
Aor51HI	AGCGCT	1 cut(s)	386
AoxI	GGCC	2 cut(s)	648, 1045
ApeKI	GCWGC	5 cut(s)	39, 627, 630, 831, 1067
Asp700I	GAANNNNTTC	1 cut(s)	482
AspLEI	GCGC	1 cut(s)	387
AspS9I	GGNCC	3 cut(s)	649, 756, 1046
AsuC2I	CCSGG	3 cut(s)	652, 683, 684
AsuHPI	GGTGA	4 cut(s)	13, 591, 691, 821
AvaI	CYCGRG	1 cut(s)	682
AvaII	GGWCC	1 cut(s)	756
BaeI	ACNNNNGTAYC	2 cut(s)	951, 984
BanII	GRGCYC	1 cut(s)	599
BbsI	GAAGAC	4 cut(s)	12, 114, 540, 936
Bbv12I	GWGCWC	2 cut(s)	717, 881
BbvI	GCAGC	5 cut(s)	26, 639, 642, 818, 1054
BccI	CCATC	2 cut(s)	596, 883
BceAI	ACGGC	2 cut(s)	11, 723
BcnI	CCSGG	3 cut(s)	652, 683, 684
BcoDI	GTCTC	3 cut(s)	151, 781, 1004
BfmI	CTRYAG	1 cut(s)	619
BfoI	RGCGCY	1 cut(s)	388
BfrI	CTTAAG	1 cut(s)	512
BisI	GCNGC	7 cut(s)	40, 628, 631, 832, 1045, 1068, 1077
BlsI	GCNGC	7 cut(s)	41, 629, 632, 833, 1046, 1069, 1078
BmcAI	AGTACT	1 cut(s)	944
Bme1390I	CCNGG	3 cut(s)	652, 683, 684
Bme18I	GGWCC	1 cut(s)	756
BmeT110I	CYCGRG	1 cut(s)	682
BmgBI	CACGTC	1 cut(s)	852
BmgT120I	GGNCC	3 cut(s)	649, 756, 1046
BmiI	GGNNCC	2 cut(s)	757, 796
BmrFI	CCNGG	3 cut(s)	652, 683, 684
BmrI	ACTGGG	1 cut(s)	781
BmsI	GCATC	1 cut(s)	614
BmuI	ACTGGG	1 cut(s)	781
BpiI	GAAGAC	4 cut(s)	12, 114, 540, 936
BpmI	CTGGAG	1 cut(s)	174
Bpu10I	CCTNAGC	1 cut(s)	360
BpuMI	CCSGG	3 cut(s)	652, 683, 684
BsaBI	GATNNNNATC	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	1004
BsaJI	CCNNGG	4 cut(s)	27, 682, 825, 1049
BsaXI	ACNNNNNCTCC	4 cut(s)	530, 560, 1045, 1075
Bsc4I	CCNNNNNNNGG	3 cut(s)	396, 593, 791
Bse1I	ACTGG	2 cut(s)	787, 1080
Bse8I	GATNNNNATC	1 cut(s)	15
BseDI	CCNNGG	4 cut(s)	27, 682, 825, 1049
BseGI	GGATG	2 cut(s)	894, 931
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	3 cut(s)	396, 593, 791
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	2 cut(s)	787, 1080
BseRI	GAGGAG	2 cut(s)	875, 878
BseXI	GCAGC	5 cut(s)	26, 639, 642, 818, 1054
BseYI	CCCAGC	2 cut(s)	381, 752
BsgI	GTGCAG	1 cut(s)	711
Bsh1236I	CGCG	1 cut(s)	763
BshFI	GGCC	2 cut(s)	650, 1047
BsiHKAI	GWGCWC	2 cut(s)	717, 881
BsiHKCI	CYCGRG	1 cut(s)	682
BsiSI	CCGG	3 cut(s)	652, 683, 1005
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	3 cut(s)	396, 593, 791
BsmAI	GTCTC	3 cut(s)	151, 781, 1004
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	2 cut(s)	650, 1047
Bso31I	GGTCTC	1 cut(s)	1004
BsoBI	CYCGRG	1 cut(s)	682
Bsp1286I	GDGCHC	3 cut(s)	599, 717, 881
Bsp143I	GATC	7 cut(s)	16, 94, 193, 232, 424, 674, 1021
Bsp19I	CCATGG	1 cut(s)	1049
BspANI	GGCC	2 cut(s)	650, 1047
BspCNI	CTCAG	1 cut(s)	175
BspFNI	CGCG	1 cut(s)	763
BspHI	TCATGA	1 cut(s)	450
BspLI	GGNNCC	2 cut(s)	757, 796
BspPI	GGATC	3 cut(s)	24, 188, 669
BspTI	CTTAAG	1 cut(s)	512
BspTNI	GGTCTC	1 cut(s)	1004
BsrBI	CCGCTC	1 cut(s)	667
BsrI	ACTGG	2 cut(s)	787, 1080
BssECI	CCNNGG	4 cut(s)	27, 682, 825, 1049
BssMI	GATC	7 cut(s)	16, 94, 193, 232, 424, 674, 1021
BssT1I	CCWWGG	2 cut(s)	825, 1049
Bst4CI	ACNGT	3 cut(s)	49, 815, 1033
Bst6I	CTCTTC	4 cut(s)	189, 282, 325, 784
BstAFI	CTTAAG	1 cut(s)	512
BstC8I	GCNNGC	1 cut(s)	750
BstDEI	CTNAG	3 cut(s)	162, 360, 421
BstDSI	CCRYGG	2 cut(s)	27, 1049
BstF5I	GGATG	2 cut(s)	894, 931
BstFNI	CGCG	1 cut(s)	763
BstH2I	RGCGCY	1 cut(s)	388
BstHHI	GCGC	1 cut(s)	387
BstKTI	GATC	7 cut(s)	19, 97, 196, 235, 427, 677, 1024
BstMAI	GTCTC	3 cut(s)	151, 781, 1004
BstMBI	GATC	7 cut(s)	16, 94, 193, 232, 424, 674, 1021
BstMWI	GCNNNNNNNGC	5 cut(s)	664, 769, 1044, 1073, 1076
BstSCI	CCNGG	3 cut(s)	650, 681, 682
BstSFI	CTRYAG	1 cut(s)	619
BstUI	CGCG	1 cut(s)	763
BstV1I	GCAGC	5 cut(s)	26, 639, 642, 818, 1054
BstV2I	GAAGAC	4 cut(s)	12, 114, 540, 936
BstX2I	RGATCY	3 cut(s)	16, 193, 674
BstYI	RGATCY	3 cut(s)	16, 193, 674
BsuRI	GGCC	2 cut(s)	650, 1047
BtgI	CCRYGG	2 cut(s)	27, 1049
BtgZI	GCGATG	2 cut(s)	73, 987
BtrI	CACGTC	1 cut(s)	852
BtsCI	GGATG	2 cut(s)	894, 931
Cac8I	GCNNGC	1 cut(s)	750
CaiI	CAGNNNCTG	1 cut(s)	39
CciI	TCATGA	1 cut(s)	450
CfoI	GCGC	1 cut(s)	387
Cfr13I	GGNCC	3 cut(s)	649, 756, 1046
Cfr9I	CCCGGG	1 cut(s)	682
CseI	GACGC	1 cut(s)	752
Csp6I	GTAC	5 cut(s)	213, 400, 530, 816, 943
CviAII	CATG	5 cut(s)	230, 403, 451, 564, 1050
CviQI	GTAC	5 cut(s)	213, 400, 530, 816, 943
DdeI	CTNAG	3 cut(s)	162, 360, 421
DpnI	GATC	7 cut(s)	18, 96, 195, 234, 426, 676, 1023
DpnII	GATC	7 cut(s)	16, 94, 193, 232, 424, 674, 1021
Eam1104I	CTCTTC	4 cut(s)	189, 282, 325, 784
EarI	CTCTTC	4 cut(s)	189, 282, 325, 784
EciI	GGCGGA	3 cut(s)	725, 872, 938
Eco130I	CCWWGG	2 cut(s)	825, 1049
Eco24I	GRGCYC	1 cut(s)	599
Eco31I	GGTCTC	1 cut(s)	1004
Eco47I	GGWCC	1 cut(s)	756
Eco47III	AGCGCT	1 cut(s)	386
Eco88I	CYCGRG	1 cut(s)	682
EcoT14I	CCWWGG	2 cut(s)	825, 1049
EcoT38I	GRGCYC	1 cut(s)	599
ErhI	CCWWGG	2 cut(s)	825, 1049
FaeI	CATG	5 cut(s)	233, 406, 454, 567, 1053
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	5 cut(s)	229, 402, 450, 563, 1049
Fnu4HI	GCNGC	7 cut(s)	40, 628, 631, 832, 1045, 1068, 1077
FokI	GGATG	2 cut(s)	901, 938
FriOI	GRGCYC	1 cut(s)	599
Fsp4HI	GCNGC	7 cut(s)	40, 628, 631, 832, 1045, 1068, 1077
GlaI	GCGC	1 cut(s)	386
GluI	GCNGC	7 cut(s)	40, 628, 631, 832, 1045, 1068, 1077
GsaI	CCCAGC	2 cut(s)	385, 756
GsuI	CTGGAG	1 cut(s)	174
HaeII	RGCGCY	1 cut(s)	388
HaeIII	GGCC	2 cut(s)	650, 1047
HapII	CCGG	3 cut(s)	652, 683, 1005
HgaI	GACGC	1 cut(s)	752
HhaI	GCGC	1 cut(s)	387
Hin1II	CATG	5 cut(s)	233, 406, 454, 567, 1053
Hin6I	GCGC	1 cut(s)	385
HinP1I	GCGC	1 cut(s)	385
HincII	GTYRAC	1 cut(s)	134
HindII	GTYRAC	1 cut(s)	134
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	3 cut(s)	478, 539, 913
HpaII	CCGG	3 cut(s)	652, 683, 1005
HphI	GGTGA	4 cut(s)	13, 591, 691, 821
Hpy166II	GTNNAC	3 cut(s)	134, 759, 1029
Hpy188III	TCNNGA	2 cut(s)	191, 451
Hpy8I	GTNNAC	3 cut(s)	134, 759, 1029
Hpy99I	CGWCG	2 cut(s)	844, 856
HpyAV	CCTTC	4 cut(s)	178, 282, 511, 989
HpyCH4III	ACNGT	3 cut(s)	49, 815, 1033
HpyCH4IV	ACGT	1 cut(s)	851
HpyCH4V	TGCA	5 cut(s)	229, 410, 498, 627, 728
HpyF10VI	GCNNNNNNNGC	5 cut(s)	664, 769, 1044, 1073, 1076
HpyF3I	CTNAG	3 cut(s)	162, 360, 421
HpySE526I	ACGT	1 cut(s)	851
Hsp92II	CATG	5 cut(s)	233, 406, 454, 567, 1053
HspAI	GCGC	1 cut(s)	385
Kzo9I	GATC	7 cut(s)	16, 94, 193, 232, 424, 674, 1021
LmnI	GCTCC	6 cut(s)	47, 392, 664, 712, 865, 876
Lsp1109I	GCAGC	5 cut(s)	26, 639, 642, 818, 1054
LweI	GCATC	1 cut(s)	614
MaeII	ACGT	1 cut(s)	851
MaeIII	GTNAC	5 cut(s)	614, 697, 764, 799, 809
MalI	GATC	7 cut(s)	18, 96, 195, 234, 426, 676, 1023
MbiI	CCGCTC	1 cut(s)	667
MboI	GATC	7 cut(s)	16, 94, 193, 232, 424, 674, 1021
MfeI	CAATTG	1 cut(s)	216
MflI	RGATCY	3 cut(s)	16, 193, 674
MhlI	GDGCHC	3 cut(s)	599, 717, 881
MluCI	AATT	1 cut(s)	216
MluI	ACGCGT	1 cut(s)	761
MlyI	GAGTC	2 cut(s)	548, 922
MmeI	TCCRAC	3 cut(s)	174, 702, 854
MroXI	GAANNNNTTC	1 cut(s)	482
MseI	TTAA	2 cut(s)	201, 513
MslI	CAYNNNNRTG	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	536
MspCI	CTTAAG	1 cut(s)	512
MspI	CCGG	3 cut(s)	652, 683, 1005
MspR9I	CCNGG	3 cut(s)	652, 683, 684
MunI	CAATTG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	763
MwoI	GCNNNNNNNGC	5 cut(s)	664, 769, 1044, 1073, 1076
NciI	CCSGG	3 cut(s)	652, 683, 684
NcoI	CCATGG	1 cut(s)	1049
NdeII	GATC	7 cut(s)	16, 94, 193, 232, 424, 674, 1021
NlaIII	CATG	5 cut(s)	233, 406, 454, 567, 1053
NlaIV	GGNNCC	2 cut(s)	757, 796
NmuCI	GTSAC	4 cut(s)	697, 764, 799, 809
OliI	CACNNNNGTG	1 cut(s)	26
PagI	TCATGA	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	1 cut(s)	848
PdmI	GAANNNNTTC	1 cut(s)	482
PfeI	GAWTC	1 cut(s)	478
PflFI	GACNNNGTC	1 cut(s)	850
PkrI	GCNGC	7 cut(s)	41, 629, 632, 833, 1046, 1069, 1078
PleI	GAGTC	2 cut(s)	547, 921
PpsI	GAGTC	2 cut(s)	547, 921
PspFI	CCCAGC	2 cut(s)	381, 752
PspN4I	GGNNCC	2 cut(s)	757, 796
PspPI	GGNCC	3 cut(s)	649, 756, 1046
PstNI	CAGNNNCTG	1 cut(s)	39
PsuI	RGATCY	3 cut(s)	16, 193, 674
PsyI	GACNNNGTC	1 cut(s)	850
RsaI	GTAC	5 cut(s)	214, 401, 531, 817, 944
RsaNI	GTAC	5 cut(s)	213, 400, 530, 816, 943
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	201, 513
SatI	GCNGC	7 cut(s)	40, 628, 631, 832, 1045, 1068, 1077
Sau3AI	GATC	7 cut(s)	16, 94, 193, 232, 424, 674, 1021
Sau96I	GGNCC	3 cut(s)	649, 756, 1046
ScaI	AGTACT	1 cut(s)	944
SchI	GAGTC	2 cut(s)	548, 922
ScrFI	CCNGG	3 cut(s)	652, 683, 684
SduI	GDGCHC	3 cut(s)	599, 717, 881
SfaNI	GCATC	1 cut(s)	614
SfcI	CTRYAG	1 cut(s)	619
SinI	GGWCC	1 cut(s)	756
SmaI	CCCGGG	1 cut(s)	684
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	1 cut(s)	216
StyD4I	CCNGG	3 cut(s)	650, 681, 682
StyI	CCWWGG	2 cut(s)	825, 1049
TaaI	ACNGT	3 cut(s)	49, 815, 1033
TaiI	ACGT	1 cut(s)	854
TasI	AATT	1 cut(s)	216
TatI	WGTACW	2 cut(s)	212, 942
TauI	GCSGC	2 cut(s)	1047, 1079
TfiI	GAWTC	1 cut(s)	478
Tru1I	TTAA	2 cut(s)	201, 513
Tru9I	TTAA	2 cut(s)	201, 513
TseFI	GTSAC	4 cut(s)	697, 764, 799, 809
TseI	GCWGC	5 cut(s)	39, 627, 630, 831, 1067
Tsp45I	GTSAC	4 cut(s)	697, 764, 799, 809
TspDTI	ATGAA	7 cut(s)	76, 114, 439, 467, 682, 918, 942
TspGWI	ACGGA	3 cut(s)	591, 787, 828
TspMI	CCCGGG	1 cut(s)	682
Tth111I	GACNNNGTC	1 cut(s)	850
Vha464I	CTTAAG	1 cut(s)	512
VpaK11BI	GGWCC	1 cut(s)	756
XmaI	CCCGGG	1 cut(s)	682
XmnI	GAANNNNTTC	1 cut(s)	482
ZrmI	AGTACT	1 cut(s)	944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.