Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8407323.1

Orthogroup ID

OG0013949

Physical Location & Seq

Genomic Coordinates Reverse (-)

1091 .. 1294

Gene Structure 204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8407323.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

atggaagcgaaagatgaaaaacagagtcctatggcggatgaagacgaaacagagtactttggggtgtgtgatacgattgtgagcgatgatttctttgtgggtttggaaggtctcgccggagattacttttccgatcactttacggtcagcttcggcggcccatggagttctggtagtgctgccaccgccgccagtagtatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009889 GO:0010033 GO:0010150 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

67

Amino Acids

7.12

Weight (kDa)

4.05

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01250
fragaria_vesca	FvH4_7g15350
malus_domestica	MD01G1071300.v1.1 MD07G1131400.v1.1
prunus_persica	Prupe.2G177400_v2.0.a1
pyrus_communis	pycom01g10030
rosa_chinensis	RchiOBHm_Chr1g0357671
rosa_laevigata	RLG00000028008
rosa_multiflora	Rmu_co8407323.1_g000001 Rmu_ssc0000425.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298610
rosa_rugosa	Rorug01G0257600
rosa_samantha	Rh1AG271600 Rh1BG238700 Rh1CG255500 Rh1DG267100
rosa_wichuraiana	Rw1G024220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	35, 156, 186, 189
AfaI	GTAC	1 cut(s)	56
AluBI	AGCT	1 cut(s)	150
AluI	AGCT	1 cut(s)	150
Alw26I	GTCTC	1 cut(s)	116
AoxI	GGCC	1 cut(s)	157
ApeKI	GCWGC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	158
BaeI	ACNNNNGTAYC	2 cut(s)	63, 96
BbsI	GAAGAC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	116
BisI	GCNGC	3 cut(s)	157, 180, 189
BlsI	GCNGC	3 cut(s)	158, 181, 190
BmcAI	AGTACT	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	158
BpiI	GAAGAC	1 cut(s)	48
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	161
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bse1I	ACTGG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	161
BseGI	GGATG	1 cut(s)	43
BseNI	ACTGG	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	166
BshFI	GGCC	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	117
BsmAI	GTCTC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	159
Bso31I	GGTCTC	1 cut(s)	116
Bsp143I	GATC	1 cut(s)	133
Bsp19I	CCATGG	1 cut(s)	161
BspACI	CCGC	4 cut(s)	35, 156, 186, 189
BspANI	GGCC	1 cut(s)	159
BspTNI	GGTCTC	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	161
BssMI	GATC	1 cut(s)	133
BssT1I	CCWWGG	1 cut(s)	161
Bst4CI	ACNGT	1 cut(s)	145
BstDSI	CCRYGG	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	43
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	3 cut(s)	156, 185, 188
BstV1I	GCAGC	1 cut(s)	166
BstV2I	GAAGAC	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	159
BtgI	CCRYGG	1 cut(s)	161
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	158
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	1 cut(s)	162
CviJI	RGCY	2 cut(s)	150, 159
CviKI_1	RGCY	2 cut(s)	150, 159
CviQI	GTAC	1 cut(s)	55
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
EciI	GGCGGA	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	161
Eco31I	GGTCTC	1 cut(s)	116
EcoT14I	CCWWGG	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	161
FaeI	CATG	1 cut(s)	165
FaiI	YATR	2 cut(s)	32, 163
FatI	CATG	1 cut(s)	161
Fnu4HI	GCNGC	3 cut(s)	157, 180, 189
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	3 cut(s)	157, 180, 189
GluI	GCNGC	3 cut(s)	157, 180, 189
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	1 cut(s)	117
Hin1II	CATG	1 cut(s)	165
HinfI	GANTC	1 cut(s)	25
HpaII	CCGG	1 cut(s)	117
Hpy188I	TCNGA	2 cut(s)	133, 203
HpyAV	CCTTC	1 cut(s)	101
HpyCH4III	ACNGT	1 cut(s)	145
HpyF10VI	GCNNNNNNNGC	3 cut(s)	156, 185, 188
Hsp92II	CATG	1 cut(s)	165
Kzo9I	GATC	1 cut(s)	133
LpnPI	CCDG	2 cut(s)	130, 156
Lsp1109I	GCAGC	1 cut(s)	166
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	34
MspI	CCGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	3 cut(s)	156, 185, 188
NcoI	CCATGG	1 cut(s)	161
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	1 cut(s)	165
PkrI	GCNGC	3 cut(s)	158, 181, 190
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	158
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SatI	GCNGC	3 cut(s)	157, 180, 189
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	1 cut(s)	158
ScaI	AGTACT	1 cut(s)	56
SchI	GAGTC	1 cut(s)	34
SetI	ASST	2 cut(s)	112, 152
SgeI	CNNG	4 cut(s)	125, 129, 174, 183
SsiI	CCGC	4 cut(s)	35, 156, 186, 189
StyI	CCWWGG	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	145
TatI	WGTACW	1 cut(s)	54
TauI	GCSGC	2 cut(s)	159, 191
TseI	GCWGC	1 cut(s)	179
TspDTI	ATGAA	2 cut(s)	30, 54
ZrmI	AGTACT	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.