Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0013949

Physical Location & Seq

Genomic Coordinates Forward (+)

50498352 .. 50500068

Gene Structure 1717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G024220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGAAGACGATTGGGATCTCACCGCCGTGGTCAGAGGCTGCTCCACCGTCCCAACCACCACCACCAACAAGCCAACCAACCCTTTCATCGCAGATCACTTCCACACAAGCCCTCTCCTGTCTTCATTTGGTCAACAGGGTTTTGTCTCCGACAACACTACTCAGACCTTCTCTGTTCTTCCTCTTCCTCCAGATCCCATTAAACCCACAAGTACAATTGAGGAACTGCATGATCTTTACAAGCCATTCTTCCCCAAATCTCAACAAACCCCTTCTCTTCTTTCTCCACCCCCACAAATCACACCACAGCCCACTTTCTCTTCCCCTCAACCTCTCCACAGACACCAACAACATCAGCCTAAGCTTTCTGCTACAAATCCCCAGCGCTCCAAAAAGAGAAAGAACCAGCTTAAGAAGGTGTGCCAAGTACCAGCGGAGTCTTTGTCTTCTGATGTGTGGGCATGGCGTAAATACGGACAGAAACCCATCAAGGGCTCACCATATCCGAGAGGTTACTATAGATGCAGCAGCTCAAAGGGTTGTATGGCCCGGAAGCAAGTGGAGCGGAACAGATCCGACCCGGAATGTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009889 GO:0010033 GO:0010150 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

197

Amino Acids

22.2

Weight (kDa)

9.53

Isoelectric Point (pI)

55.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	151 - 195	1e-18	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0013949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01250
fragaria_vesca	FvH4_7g15350
malus_domestica	MD01G1071300.v1.1 MD07G1131400.v1.1
prunus_persica	Prupe.2G177400_v2.0.a1
pyrus_communis	pycom01g10030
rosa_chinensis	RchiOBHm_Chr1g0357671
rosa_laevigata	RLG00000028008
rosa_multiflora	Rmu_co8407323.1_g000001 Rmu_ssc0000425.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298610
rosa_rugosa	Rorug01G0257600
rosa_samantha	Rh1AG271600 Rh1BG238700 Rh1CG255500 Rh1DG267100
rosa_wichuraiana	Rw1G024220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	565
AciI	CCGC	3 cut(s)	24, 434, 565
AclWI	GGATC	3 cut(s)	24, 188, 567
AfaI	GTAC	2 cut(s)	214, 429
AfeI	AGCGCT	1 cut(s)	386
AfiI	CCNNNNNNNGG	1 cut(s)	491
AflII	CTTAAG	1 cut(s)	410
AleI	CACNNNNGTG	1 cut(s)	26
AluBI	AGCT	3 cut(s)	364, 409, 531
AluI	AGCT	3 cut(s)	364, 409, 531
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	3 cut(s)	24, 188, 567
AlwNI	CAGNNNCTG	1 cut(s)	39
Aor51HI	AGCGCT	1 cut(s)	386
AoxI	GGCC	1 cut(s)	546
ApeKI	GCWGC	3 cut(s)	39, 525, 528
AspLEI	GCGC	1 cut(s)	387
AspS9I	GGNCC	1 cut(s)	547
AsuC2I	CCSGG	2 cut(s)	550, 581
AsuHPI	GGTGA	2 cut(s)	13, 489
BanII	GRGCYC	1 cut(s)	497
BbsI	GAAGAC	3 cut(s)	12, 114, 438
BbvI	GCAGC	3 cut(s)	26, 537, 540
BccI	CCATC	1 cut(s)	494
BceAI	ACGGC	1 cut(s)	11
BcnI	CCSGG	2 cut(s)	550, 581
BcoDI	GTCTC	1 cut(s)	151
BfmI	CTRYAG	1 cut(s)	517
BfoI	RGCGCY	1 cut(s)	388
BfrI	CTTAAG	1 cut(s)	410
BisI	GCNGC	3 cut(s)	40, 526, 529
BlsI	GCNGC	3 cut(s)	41, 527, 530
Bme1390I	CCNGG	2 cut(s)	550, 581
BmgT120I	GGNCC	1 cut(s)	547
BmrFI	CCNGG	2 cut(s)	550, 581
BmsI	GCATC	1 cut(s)	512
BpiI	GAAGAC	3 cut(s)	12, 114, 438
BpmI	CTGGAG	1 cut(s)	174
Bpu10I	CCTNAGC	1 cut(s)	360
BpuMI	CCSGG	2 cut(s)	550, 581
BsaBI	GATNNNNATC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	27
BsaXI	ACNNNNNCTCC	2 cut(s)	428, 458
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
Bse8I	GATNNNNATC	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	27
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseMII	CTCAG	1 cut(s)	176
BseXI	GCAGC	3 cut(s)	26, 537, 540
BseYI	CCCAGC	1 cut(s)	381
BshFI	GGCC	1 cut(s)	548
BsiSI	CCGG	2 cut(s)	550, 581
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	491
BsmAI	GTCTC	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	548
Bsp1286I	GDGCHC	1 cut(s)	497
Bsp143I	GATC	5 cut(s)	16, 94, 193, 232, 572
BspACI	CCGC	3 cut(s)	24, 434, 565
BspANI	GGCC	1 cut(s)	548
BspCNI	CTCAG	1 cut(s)	175
BspPI	GGATC	3 cut(s)	24, 188, 567
BspTI	CTTAAG	1 cut(s)	410
BsrBI	CCGCTC	1 cut(s)	565
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	5 cut(s)	16, 94, 193, 232, 572
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	3 cut(s)	189, 282, 325
BstAFI	CTTAAG	1 cut(s)	410
BstDEI	CTNAG	2 cut(s)	162, 360
BstDSI	CCRYGG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	388
BstHHI	GCGC	1 cut(s)	387
BstKTI	GATC	5 cut(s)	19, 97, 196, 235, 575
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	5 cut(s)	16, 94, 193, 232, 572
BstMWI	GCNNNNNNNGC	1 cut(s)	562
BstSCI	CCNGG	2 cut(s)	548, 579
BstSFI	CTRYAG	1 cut(s)	517
BstV1I	GCAGC	3 cut(s)	26, 537, 540
BstV2I	GAAGAC	3 cut(s)	12, 114, 438
BstX2I	RGATCY	3 cut(s)	16, 193, 572
BstYI	RGATCY	3 cut(s)	16, 193, 572
BsuRI	GGCC	1 cut(s)	548
BtgI	CCRYGG	1 cut(s)	27
BtgZI	GCGATG	1 cut(s)	73
CaiI	CAGNNNCTG	1 cut(s)	39
CfoI	GCGC	1 cut(s)	387
Cfr13I	GGNCC	1 cut(s)	547
Csp6I	GTAC	2 cut(s)	213, 428
CviAII	CATG	2 cut(s)	230, 462
CviQI	GTAC	2 cut(s)	213, 428
DdeI	CTNAG	2 cut(s)	162, 360
DpnI	GATC	5 cut(s)	18, 96, 195, 234, 574
DpnII	GATC	5 cut(s)	16, 94, 193, 232, 572
Eam1104I	CTCTTC	3 cut(s)	189, 282, 325
EarI	CTCTTC	3 cut(s)	189, 282, 325
Eco24I	GRGCYC	1 cut(s)	497
Eco47III	AGCGCT	1 cut(s)	386
EcoT38I	GRGCYC	1 cut(s)	497
FaeI	CATG	2 cut(s)	233, 465
FaiI	YATR	6 cut(s)	231, 463, 502, 519, 545, 592
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	2 cut(s)	229, 461
Fnu4HI	GCNGC	3 cut(s)	40, 526, 529
FriOI	GRGCYC	1 cut(s)	497
Fsp4HI	GCNGC	3 cut(s)	40, 526, 529
GlaI	GCGC	1 cut(s)	386
GluI	GCNGC	3 cut(s)	40, 526, 529
GsaI	CCCAGC	1 cut(s)	385
GsuI	CTGGAG	1 cut(s)	174
HaeII	RGCGCY	1 cut(s)	388
HaeIII	GGCC	1 cut(s)	548
HapII	CCGG	2 cut(s)	550, 581
HhaI	GCGC	1 cut(s)	387
Hin1II	CATG	2 cut(s)	233, 465
Hin6I	GCGC	1 cut(s)	385
HinP1I	GCGC	1 cut(s)	385
HincII	GTYRAC	1 cut(s)	134
HindII	GTYRAC	1 cut(s)	134
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	1 cut(s)	437
HpaII	CCGG	2 cut(s)	550, 581
HphI	GGTGA	2 cut(s)	13, 489
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188I	TCNGA	6 cut(s)	35, 151, 165, 451, 507, 577
Hpy188III	TCNNGA	1 cut(s)	191
Hpy8I	GTNNAC	1 cut(s)	134
HpyAV	CCTTC	3 cut(s)	178, 282, 409
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	2 cut(s)	229, 525
HpyF10VI	GCNNNNNNNGC	1 cut(s)	562
HpyF3I	CTNAG	2 cut(s)	162, 360
Hsp92II	CATG	2 cut(s)	233, 465
HspAI	GCGC	1 cut(s)	385
Kzo9I	GATC	5 cut(s)	16, 94, 193, 232, 572
LmnI	GCTCC	3 cut(s)	47, 392, 562
LpnPI	CCDG	7 cut(s)	122, 131, 204, 395, 419, 444, 563
Lsp1109I	GCAGC	3 cut(s)	26, 537, 540
LweI	GCATC	1 cut(s)	512
MaeIII	GTNAC	1 cut(s)	512
MalI	GATC	5 cut(s)	18, 96, 195, 234, 574
MbiI	CCGCTC	1 cut(s)	565
MboI	GATC	5 cut(s)	16, 94, 193, 232, 572
MboII	GAAGA	8 cut(s)	17, 114, 170, 176, 241, 269, 312, 438
MfeI	CAATTG	1 cut(s)	216
MflI	RGATCY	3 cut(s)	16, 193, 572
MhlI	GDGCHC	1 cut(s)	497
MluCI	AATT	1 cut(s)	216
MlyI	GAGTC	1 cut(s)	446
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	8 cut(s)	29, 123, 192, 198, 214, 336, 342, 503
MseI	TTAA	2 cut(s)	201, 411
MslI	CAYNNNNRTG	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	434
MspCI	CTTAAG	1 cut(s)	410
MspI	CCGG	2 cut(s)	550, 581
MspR9I	CCNGG	2 cut(s)	550, 581
MunI	CAATTG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	562
NciI	CCSGG	2 cut(s)	550, 581
NdeII	GATC	5 cut(s)	16, 94, 193, 232, 572
NlaIII	CATG	2 cut(s)	233, 465
OliI	CACNNNNGTG	1 cut(s)	26
PkrI	GCNGC	3 cut(s)	41, 527, 530
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
PspFI	CCCAGC	1 cut(s)	381
PspPI	GGNCC	1 cut(s)	547
PstNI	CAGNNNCTG	1 cut(s)	39
PsuI	RGATCY	3 cut(s)	16, 193, 572
RsaI	GTAC	2 cut(s)	214, 429
RsaNI	GTAC	2 cut(s)	213, 428
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	201, 411
SatI	GCNGC	3 cut(s)	40, 526, 529
Sau3AI	GATC	5 cut(s)	16, 94, 193, 232, 572
Sau96I	GGNCC	1 cut(s)	547
SchI	GAGTC	1 cut(s)	446
ScrFI	CCNGG	2 cut(s)	550, 581
SduI	GDGCHC	1 cut(s)	497
SetI	ASST	7 cut(s)	170, 334, 366, 411, 420, 514, 533
SfaNI	GCATC	1 cut(s)	512
SfcI	CTRYAG	1 cut(s)	517
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	1 cut(s)	216
SsiI	CCGC	3 cut(s)	24, 434, 565
StyD4I	CCNGG	2 cut(s)	548, 579
TaaI	ACNGT	1 cut(s)	49
TasI	AATT	1 cut(s)	216
TatI	WGTACW	1 cut(s)	212
Tru1I	TTAA	2 cut(s)	201, 411
Tru9I	TTAA	2 cut(s)	201, 411
TseI	GCWGC	3 cut(s)	39, 525, 528
TspDTI	ATGAA	3 cut(s)	76, 114, 579
TspGWI	ACGGA	1 cut(s)	489
Vha464I	CTTAAG	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.