Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000425.1

Orthogroup ID

OG0013949

Physical Location & Seq

Genomic Coordinates Forward (+)

1822 .. 3227

Gene Structure 1406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000425.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

atggaagacgattgggatctcaccgccgtggtcagaggctgctccaccatcccaaccaccaccaccaccaccaccaacaagccaaccaaccctttcatcacagatcacttccacacaagccctctcccgtcttcatttggtcaacagggttttgtctccgacagcactactcagaccttctctgttcttcctcttcctccagatcccattaaacccacaagtacaattgaggaactgcatgatctttacaagccattcttccccaaatctcaacaaaccccttctcttctttctccacccccacaaatcacaccacagcccactttctcttcccctcaacctctccacagacaccaacaacatcagcctaagctttctgctacaaatccccagcgctccaaaaagagaaagaaccagcttaagaaggtgtgccaagtaccagcggagtctttgtcttctgatgtgtgggcatggcgtaaatacggacagaaacccatcaagggctcaccatatccgagaggttactatagatgcagcagctcaaagggttgtatggcccggaagcaagtggagcggaacagatccgacccgggaatgttcatagtcacctacacggcggagcacaaccaccctgcaccgacacaccgcaactcgcttgctgggtccacgcgtcacaagcctgtctcttctccccagtcgggttccgtcacgggaggtgactctaccaaacccaagggctgctctccgtcgccgaccacgtcggcggaggaggaacttggtcggagcacaacaaggatggaagcgaaagatgaaaaacagagtcctatggcggatgaagacgaaacagagtactttggggtgtgtgatacgattgtgagcgatgatttctttgtgggtctggaaggtctcgccggagattacttttccgatcactttacggtcagcttcggcggcccatggagttctggtagtgctgccaccgccgccagtagtatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009889 GO:0010033 GO:0010150 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

332

Amino Acids

36.35

Weight (kDa)

7.68

Isoelectric Point (pI)

54.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01250
fragaria_vesca	FvH4_7g15350
malus_domestica	MD01G1071300.v1.1 MD07G1131400.v1.1
prunus_persica	Prupe.2G177400_v2.0.a1
pyrus_communis	pycom01g10030
rosa_chinensis	RchiOBHm_Chr1g0357671
rosa_laevigata	RLG00000028008
rosa_multiflora	Rmu_co8407323.1_g000001 Rmu_ssc0000425.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298610
rosa_rugosa	Rorug01G0257600
rosa_samantha	Rh1AG271600 Rh1BG238700 Rh1CG255500 Rh1DG267100
rosa_wichuraiana	Rw1G024220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	574
AccII	CGCG	1 cut(s)	670
AclWI	GGATC	3 cut(s)	24, 197, 576
AfaI	GTAC	3 cut(s)	223, 438, 851
AfeI	AGCGCT	1 cut(s)	395
AfiI	CCNNNNNNNGG	2 cut(s)	500, 698
AflII	CTTAAG	1 cut(s)	419
AflIII	ACRYGT	1 cut(s)	668
AjiI	CACGTC	1 cut(s)	759
AleI	CACNNNNGTG	1 cut(s)	26
AluBI	AGCT	4 cut(s)	373, 418, 540, 945
AluI	AGCT	4 cut(s)	373, 418, 540, 945
Alw21I	GWGCWC	2 cut(s)	624, 788
Alw26I	GTCTC	3 cut(s)	160, 688, 911
AlwI	GGATC	3 cut(s)	24, 197, 576
AlwNI	CAGNNNCTG	1 cut(s)	39
Ama87I	CYCGRG	1 cut(s)	589
Aor51HI	AGCGCT	1 cut(s)	395
AoxI	GGCC	2 cut(s)	555, 952
ApeKI	GCWGC	5 cut(s)	39, 534, 537, 738, 974
AspLEI	GCGC	1 cut(s)	396
AspS9I	GGNCC	3 cut(s)	556, 663, 953
AsuC2I	CCSGG	3 cut(s)	559, 590, 591
AsuHPI	GGTGA	4 cut(s)	13, 498, 598, 728
AvaI	CYCGRG	1 cut(s)	589
AvaII	GGWCC	1 cut(s)	663
BaeI	ACNNNNGTAYC	2 cut(s)	858, 891
BanII	GRGCYC	1 cut(s)	506
BbsI	GAAGAC	4 cut(s)	12, 123, 447, 843
Bbv12I	GWGCWC	2 cut(s)	624, 788
BbvI	GCAGC	5 cut(s)	26, 546, 549, 725, 961
BccI	CCATC	3 cut(s)	56, 503, 790
BceAI	ACGGC	2 cut(s)	11, 630
BcnI	CCSGG	3 cut(s)	559, 590, 591
BcoDI	GTCTC	3 cut(s)	160, 688, 911
BfmI	CTRYAG	1 cut(s)	526
BfoI	RGCGCY	1 cut(s)	397
BfrI	CTTAAG	1 cut(s)	419
BisI	GCNGC	7 cut(s)	40, 535, 538, 739, 952, 975, 984
BlsI	GCNGC	7 cut(s)	41, 536, 539, 740, 953, 976, 985
BmcAI	AGTACT	1 cut(s)	851
Bme1390I	CCNGG	3 cut(s)	559, 590, 591
Bme18I	GGWCC	1 cut(s)	663
BmeT110I	CYCGRG	1 cut(s)	589
BmgBI	CACGTC	1 cut(s)	759
BmgT120I	GGNCC	3 cut(s)	556, 663, 953
BmiI	GGNNCC	2 cut(s)	664, 703
BmrFI	CCNGG	3 cut(s)	559, 590, 591
BmrI	ACTGGG	1 cut(s)	688
BmsI	GCATC	1 cut(s)	521
BmuI	ACTGGG	1 cut(s)	688
BpiI	GAAGAC	4 cut(s)	12, 123, 447, 843
BpmI	CTGGAG	1 cut(s)	183
Bpu10I	CCTNAGC	1 cut(s)	369
BpuMI	CCSGG	3 cut(s)	559, 590, 591
BsaBI	GATNNNNATC	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	911
BsaJI	CCNNGG	4 cut(s)	27, 589, 732, 956
BsaXI	ACNNNNNCTCC	4 cut(s)	437, 467, 952, 982
Bsc4I	CCNNNNNNNGG	2 cut(s)	500, 698
Bse1I	ACTGG	2 cut(s)	694, 987
Bse8I	GATNNNNATC	1 cut(s)	15
BseDI	CCNNGG	4 cut(s)	27, 589, 732, 956
BseGI	GGATG	3 cut(s)	48, 801, 838
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	2 cut(s)	500, 698
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	2 cut(s)	694, 987
BseRI	GAGGAG	1 cut(s)	782
BseXI	GCAGC	5 cut(s)	26, 546, 549, 725, 961
BseYI	CCCAGC	2 cut(s)	390, 659
BsgI	GTGCAG	1 cut(s)	618
Bsh1236I	CGCG	1 cut(s)	670
BshFI	GGCC	2 cut(s)	557, 954
BsiHKAI	GWGCWC	2 cut(s)	624, 788
BsiHKCI	CYCGRG	1 cut(s)	589
BsiSI	CCGG	3 cut(s)	559, 590, 912
BslI	CCNNNNNNNGG	2 cut(s)	500, 698
BsmAI	GTCTC	3 cut(s)	160, 688, 911
BsnI	GGCC	2 cut(s)	557, 954
Bso31I	GGTCTC	1 cut(s)	911
BsoBI	CYCGRG	1 cut(s)	589
Bsp1286I	GDGCHC	3 cut(s)	506, 624, 788
Bsp143I	GATC	6 cut(s)	16, 103, 202, 241, 581, 928
Bsp19I	CCATGG	1 cut(s)	956
BspANI	GGCC	2 cut(s)	557, 954
BspCNI	CTCAG	1 cut(s)	184
BspFNI	CGCG	1 cut(s)	670
BspLI	GGNNCC	2 cut(s)	664, 703
BspPI	GGATC	3 cut(s)	24, 197, 576
BspTI	CTTAAG	1 cut(s)	419
BspTNI	GGTCTC	1 cut(s)	911
BsrBI	CCGCTC	1 cut(s)	574
BsrI	ACTGG	2 cut(s)	694, 987
BssECI	CCNNGG	4 cut(s)	27, 589, 732, 956
BssMI	GATC	6 cut(s)	16, 103, 202, 241, 581, 928
BssT1I	CCWWGG	2 cut(s)	732, 956
Bst4CI	ACNGT	1 cut(s)	940
Bst6I	CTCTTC	4 cut(s)	198, 291, 334, 691
BstAFI	CTTAAG	1 cut(s)	419
BstC8I	GCNNGC	1 cut(s)	657
BstDEI	CTNAG	2 cut(s)	171, 369
BstDSI	CCRYGG	2 cut(s)	27, 956
BstF5I	GGATG	3 cut(s)	48, 801, 838
BstFNI	CGCG	1 cut(s)	670
BstH2I	RGCGCY	1 cut(s)	397
BstHHI	GCGC	1 cut(s)	396
BstKTI	GATC	6 cut(s)	19, 106, 205, 244, 584, 931
BstMAI	GTCTC	3 cut(s)	160, 688, 911
BstMBI	GATC	6 cut(s)	16, 103, 202, 241, 581, 928
BstMWI	GCNNNNNNNGC	5 cut(s)	571, 676, 951, 980, 983
BstSCI	CCNGG	3 cut(s)	557, 588, 589
BstSFI	CTRYAG	1 cut(s)	526
BstUI	CGCG	1 cut(s)	670
BstV1I	GCAGC	5 cut(s)	26, 546, 549, 725, 961
BstV2I	GAAGAC	4 cut(s)	12, 123, 447, 843
BstX2I	RGATCY	3 cut(s)	16, 202, 581
BstYI	RGATCY	3 cut(s)	16, 202, 581
BsuRI	GGCC	2 cut(s)	557, 954
BtgI	CCRYGG	2 cut(s)	27, 956
BtgZI	GCGATG	1 cut(s)	894
BtrI	CACGTC	1 cut(s)	759
BtsCI	GGATG	3 cut(s)	48, 801, 838
Cac8I	GCNNGC	1 cut(s)	657
CaiI	CAGNNNCTG	1 cut(s)	39
CfoI	GCGC	1 cut(s)	396
Cfr13I	GGNCC	3 cut(s)	556, 663, 953
Cfr9I	CCCGGG	1 cut(s)	589
CseI	GACGC	1 cut(s)	659
Csp6I	GTAC	3 cut(s)	222, 437, 850
CviAII	CATG	3 cut(s)	239, 471, 957
CviQI	GTAC	3 cut(s)	222, 437, 850
DdeI	CTNAG	2 cut(s)	171, 369
DpnI	GATC	6 cut(s)	18, 105, 204, 243, 583, 930
DpnII	GATC	6 cut(s)	16, 103, 202, 241, 581, 928
Eam1104I	CTCTTC	4 cut(s)	198, 291, 334, 691
EarI	CTCTTC	4 cut(s)	198, 291, 334, 691
EciI	GGCGGA	3 cut(s)	632, 779, 845
Eco130I	CCWWGG	2 cut(s)	732, 956
Eco24I	GRGCYC	1 cut(s)	506
Eco31I	GGTCTC	1 cut(s)	911
Eco47I	GGWCC	1 cut(s)	663
Eco47III	AGCGCT	1 cut(s)	395
Eco88I	CYCGRG	1 cut(s)	589
EcoT14I	CCWWGG	2 cut(s)	732, 956
EcoT38I	GRGCYC	1 cut(s)	506
ErhI	CCWWGG	2 cut(s)	732, 956
FaeI	CATG	3 cut(s)	242, 474, 960
FaiI	YATR	8 cut(s)	240, 472, 511, 528, 554, 602, 827, 958
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FatI	CATG	3 cut(s)	238, 470, 956
Fnu4HI	GCNGC	7 cut(s)	40, 535, 538, 739, 952, 975, 984
FokI	GGATG	3 cut(s)	35, 808, 845
FriOI	GRGCYC	1 cut(s)	506
Fsp4HI	GCNGC	7 cut(s)	40, 535, 538, 739, 952, 975, 984
GlaI	GCGC	1 cut(s)	395
GluI	GCNGC	7 cut(s)	40, 535, 538, 739, 952, 975, 984
GsaI	CCCAGC	2 cut(s)	394, 663
GsuI	CTGGAG	1 cut(s)	183
HaeII	RGCGCY	1 cut(s)	397
HaeIII	GGCC	2 cut(s)	557, 954
HapII	CCGG	3 cut(s)	559, 590, 912
HgaI	GACGC	1 cut(s)	659
HhaI	GCGC	1 cut(s)	396
Hin1II	CATG	3 cut(s)	242, 474, 960
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HincII	GTYRAC	1 cut(s)	143
HindII	GTYRAC	1 cut(s)	143
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	3 cut(s)	446, 719, 820
HpaII	CCGG	3 cut(s)	559, 590, 912
HphI	GGTGA	4 cut(s)	13, 498, 598, 728
Hpy166II	GTNNAC	2 cut(s)	143, 666
Hpy188I	TCNGA	9 cut(s)	35, 160, 174, 460, 516, 586, 783, 928, 998
Hpy188III	TCNNGA	2 cut(s)	200, 899
Hpy8I	GTNNAC	2 cut(s)	143, 666
Hpy99I	CGWCG	2 cut(s)	751, 763
HpyAV	CCTTC	4 cut(s)	187, 291, 418, 896
HpyCH4III	ACNGT	1 cut(s)	940
HpyCH4IV	ACGT	1 cut(s)	758
HpyCH4V	TGCA	3 cut(s)	238, 534, 635
HpyF10VI	GCNNNNNNNGC	5 cut(s)	571, 676, 951, 980, 983
HpyF3I	CTNAG	2 cut(s)	171, 369
HpySE526I	ACGT	1 cut(s)	758
Hsp92II	CATG	3 cut(s)	242, 474, 960
HspAI	GCGC	1 cut(s)	394
Kzo9I	GATC	6 cut(s)	16, 103, 202, 241, 581, 928
LmnI	GCTCC	5 cut(s)	47, 401, 571, 619, 783
Lsp1109I	GCAGC	5 cut(s)	26, 546, 549, 725, 961
LweI	GCATC	1 cut(s)	521
MaeII	ACGT	1 cut(s)	758
MaeIII	GTNAC	5 cut(s)	521, 604, 671, 706, 716
MalI	GATC	6 cut(s)	18, 105, 204, 243, 583, 930
MbiI	CCGCTC	1 cut(s)	574
MboI	GATC	6 cut(s)	16, 103, 202, 241, 581, 928
MfeI	CAATTG	1 cut(s)	225
MflI	RGATCY	3 cut(s)	16, 202, 581
MhlI	GDGCHC	3 cut(s)	506, 624, 788
MluCI	AATT	1 cut(s)	225
MluI	ACGCGT	1 cut(s)	668
MlyI	GAGTC	3 cut(s)	455, 713, 829
MmeI	TCCRAC	3 cut(s)	183, 609, 761
MseI	TTAA	2 cut(s)	210, 420
MslI	CAYNNNNRTG	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	443
MspCI	CTTAAG	1 cut(s)	419
MspI	CCGG	3 cut(s)	559, 590, 912
MspR9I	CCNGG	3 cut(s)	559, 590, 591
MunI	CAATTG	1 cut(s)	225
MvnI	CGCG	1 cut(s)	670
MwoI	GCNNNNNNNGC	5 cut(s)	571, 676, 951, 980, 983
NciI	CCSGG	3 cut(s)	559, 590, 591
NcoI	CCATGG	1 cut(s)	956
NdeII	GATC	6 cut(s)	16, 103, 202, 241, 581, 928
NlaIII	CATG	3 cut(s)	242, 474, 960
NlaIV	GGNNCC	2 cut(s)	664, 703
NmuCI	GTSAC	4 cut(s)	604, 671, 706, 716
OliI	CACNNNNGTG	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	1 cut(s)	755
PflFI	GACNNNGTC	1 cut(s)	757
PkrI	GCNGC	7 cut(s)	41, 536, 539, 740, 953, 976, 985
PleI	GAGTC	3 cut(s)	454, 713, 828
PpsI	GAGTC	3 cut(s)	454, 713, 828
PspFI	CCCAGC	2 cut(s)	390, 659
PspN4I	GGNNCC	2 cut(s)	664, 703
PspPI	GGNCC	3 cut(s)	556, 663, 953
PstNI	CAGNNNCTG	1 cut(s)	39
PsuI	RGATCY	3 cut(s)	16, 202, 581
PsyI	GACNNNGTC	1 cut(s)	757
RsaI	GTAC	3 cut(s)	223, 438, 851
RsaNI	GTAC	3 cut(s)	222, 437, 850
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	210, 420
SatI	GCNGC	7 cut(s)	40, 535, 538, 739, 952, 975, 984
Sau3AI	GATC	6 cut(s)	16, 103, 202, 241, 581, 928
Sau96I	GGNCC	3 cut(s)	556, 663, 953
ScaI	AGTACT	1 cut(s)	851
SchI	GAGTC	3 cut(s)	455, 713, 829
ScrFI	CCNGG	3 cut(s)	559, 590, 591
SduI	GDGCHC	3 cut(s)	506, 624, 788
SfaNI	GCATC	1 cut(s)	521
SfcI	CTRYAG	1 cut(s)	526
SinI	GGWCC	1 cut(s)	663
SmaI	CCCGGG	1 cut(s)	591
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	1 cut(s)	225
StyD4I	CCNGG	3 cut(s)	557, 588, 589
StyI	CCWWGG	2 cut(s)	732, 956
TaaI	ACNGT	1 cut(s)	940
TaiI	ACGT	1 cut(s)	761
TasI	AATT	1 cut(s)	225
TatI	WGTACW	2 cut(s)	221, 849
TauI	GCSGC	2 cut(s)	954, 986
Tru1I	TTAA	2 cut(s)	210, 420
Tru9I	TTAA	2 cut(s)	210, 420
TseFI	GTSAC	4 cut(s)	604, 671, 706, 716
TseI	GCWGC	5 cut(s)	39, 534, 537, 738, 974
Tsp45I	GTSAC	4 cut(s)	604, 671, 706, 716
TspDTI	ATGAA	5 cut(s)	85, 123, 589, 825, 849
TspGWI	ACGGA	3 cut(s)	498, 694, 735
TspMI	CCCGGG	1 cut(s)	589
Tth111I	GACNNNGTC	1 cut(s)	757
Vha464I	CTTAAG	1 cut(s)	419
VpaK11BI	GGWCC	1 cut(s)	663
XmaI	CCCGGG	1 cut(s)	589
ZrmI	AGTACT	1 cut(s)	851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.