Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0013949

Physical Location & Seq

Genomic Coordinates Forward (+)

48402685 .. 48404584

Gene Structure 1900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG267100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGAAGACGATTGGGATCTCACCGCCGTGGTCAGAGGCTGCTCCACCGTCCCAACCACCACCACCGCCAACAAGCCAACCAACGCTTTCATCACAGACCACTTCCACACAAGCCCTCTCCTGTCTTCATTTGGTCAACAAGGTTTTGTCTCCAACAACACTACTCAAACCTTCTCTGTTCTTCCTCTCCCTCCAGATCCCATTAAACCCACAAGTGCAATTGAGGAACTGCATGATCTTTACAAGCCATTCTTCCCCAAATCTCACCAAACCCCTTCTCTTCTTTCTCCACCCCCACAAATCACACCACAGCCCACTTTCTCTTCCCCTCAACCTCTCCACAGACACCCACCACATCAGCCTAAGCTTTCTGCTACTAATCCCCAGCGCTCCAAAAAGAGGTACAAGATTGCAACTTTGCTCTTAGATCACTACTTTTGTTTGCTTTGCTTCATGAAGTTGGTTTATTTATGGTTTTTGAATATTTTCCATTTCTTTATTTGCAGAAAGAACCAGCTTAAGAAGGTGTGCCAAGTACCAGCGGAGTCTTTGTCTTCTGATGTGTGGGCATGGCGTAAATACGGACAGAAACCCATCAAGGGCTCACCATATCCGAGAGGTTACTACAGATGCAGCAGCTCAAAGGGTTGTATGGCCCGGAAGCAAGTGGAGCGGAACAGATCCGACCCGGGAATGTTCATAGTCACCTACACGGCGGAGCACAACCACCCTGCACCGACTCACCGCAACTCGCTTGCTGGGTCCACGCGTCACAAGCCTGTCTCTTCTCCCCAGTCGGGTTCCGTCACGGGCGGTGACTCTACCAAACCCAAGGGCTGCTCTCCGTCGCCGGCCACGTCGGCGGAGGAGGAGCTTGGTCGGAGCACAACAAGGATGGAAGCGAAAGAAGAAAAACAGAGTCCTCTGGCGGATGAAGACGAAACAGAGTACTTTGGGGTGTGTGATACGATTGTGAGCGATGATTTCTTTGTGGGTTTGGAAGGTTTCGCCGGAGATTACTTTTCCGATCACTTTACGGCCAGCTTCGGCGGCCCATGGAGTTCTGGTAATGCTGCCACCGCCGCCAGTAGTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009889 GO:0010033 GO:0010150 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

365

Amino Acids

40.47

Weight (kDa)

8.48

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	187 - 244	1.2e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01250
fragaria_vesca	FvH4_7g15350
malus_domestica	MD01G1071300.v1.1 MD07G1131400.v1.1
prunus_persica	Prupe.2G177400_v2.0.a1
pyrus_communis	pycom01g10030
rosa_chinensis	RchiOBHm_Chr1g0357671
rosa_laevigata	RLG00000028008
rosa_multiflora	Rmu_co8407323.1_g000001 Rmu_ssc0000425.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298610
rosa_rugosa	Rorug01G0257600
rosa_samantha	Rh1AG271600 Rh1BG238700 Rh1CG255500 Rh1DG267100
rosa_wichuraiana	Rw1G024220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	673
AccII	CGCG	1 cut(s)	769
AclWI	GGATC	3 cut(s)	24, 191, 675
AcoI	YGGCCR	2 cut(s)	852, 1038
AfaI	GTAC	3 cut(s)	404, 537, 950
AfeI	AGCGCT	1 cut(s)	389
AfiI	CCNNNNNNNGG	3 cut(s)	399, 599, 797
AflII	CTTAAG	1 cut(s)	518
AflIII	ACRYGT	1 cut(s)	767
AgsI	TTSAA	1 cut(s)	481
AjiI	CACGTC	1 cut(s)	858
AleI	CACNNNNGTG	1 cut(s)	26
AluBI	AGCT	5 cut(s)	367, 517, 639, 874, 1044
AluI	AGCT	5 cut(s)	367, 517, 639, 874, 1044
Alw21I	GWGCWC	2 cut(s)	723, 887
Alw26I	GTCTC	2 cut(s)	154, 787
AlwI	GGATC	3 cut(s)	24, 191, 675
AlwNI	CAGNNNCTG	1 cut(s)	39
Ama87I	CYCGRG	1 cut(s)	688
Aor51HI	AGCGCT	1 cut(s)	389
AoxI	GGCC	4 cut(s)	654, 852, 1038, 1051
ApeKI	GCWGC	5 cut(s)	39, 633, 636, 837, 1073
Asp700I	GAANNNNTTC	1 cut(s)	485
AspLEI	GCGC	1 cut(s)	390
AspS9I	GGNCC	3 cut(s)	655, 762, 1052
AsuC2I	CCSGG	3 cut(s)	658, 689, 690
AsuHPI	GGTGA	6 cut(s)	13, 257, 597, 697, 734, 827
AvaI	CYCGRG	1 cut(s)	688
AvaII	GGWCC	1 cut(s)	762
BaeI	ACNNNNGTAYC	2 cut(s)	957, 990
BanII	GRGCYC	1 cut(s)	605
BbsI	GAAGAC	4 cut(s)	12, 117, 546, 942
Bbv12I	GWGCWC	2 cut(s)	723, 887
BbvI	GCAGC	5 cut(s)	26, 645, 648, 824, 1060
BccI	CCATC	2 cut(s)	602, 889
BceAI	ACGGC	3 cut(s)	11, 729, 1053
BcnI	CCSGG	3 cut(s)	658, 689, 690
BcoDI	GTCTC	2 cut(s)	154, 787
BfmI	CTRYAG	1 cut(s)	625
BfoI	RGCGCY	1 cut(s)	391
BfrI	CTTAAG	1 cut(s)	518
BglI	GCCNNNNNGGC	1 cut(s)	860
BisI	GCNGC	7 cut(s)	40, 634, 637, 838, 1051, 1074, 1083
BlsI	GCNGC	7 cut(s)	41, 635, 638, 839, 1052, 1075, 1084
BmcAI	AGTACT	1 cut(s)	950
Bme1390I	CCNGG	3 cut(s)	658, 689, 690
Bme18I	GGWCC	1 cut(s)	762
BmeT110I	CYCGRG	1 cut(s)	688
BmgBI	CACGTC	1 cut(s)	858
BmgT120I	GGNCC	3 cut(s)	655, 762, 1052
BmiI	GGNNCC	2 cut(s)	763, 802
BmrFI	CCNGG	3 cut(s)	658, 689, 690
BmrI	ACTGGG	1 cut(s)	787
BmsI	GCATC	1 cut(s)	620
BmuI	ACTGGG	1 cut(s)	787
BpiI	GAAGAC	4 cut(s)	12, 117, 546, 942
BpmI	CTGGAG	1 cut(s)	177
Bpu10I	CCTNAGC	1 cut(s)	363
BpuMI	CCSGG	3 cut(s)	658, 689, 690
BsaBI	GATNNNNATC	1 cut(s)	15
BsaJI	CCNNGG	4 cut(s)	27, 688, 831, 1055
BsaXI	ACNNNNNCTCC	4 cut(s)	536, 566, 1051, 1081
Bsc4I	CCNNNNNNNGG	3 cut(s)	399, 599, 797
Bse118I	RCCGGY	1 cut(s)	850
Bse1I	ACTGG	2 cut(s)	793, 1086
Bse8I	GATNNNNATC	1 cut(s)	15
BseDI	CCNNGG	4 cut(s)	27, 688, 831, 1055
BseGI	GGATG	2 cut(s)	900, 937
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	3 cut(s)	399, 599, 797
BseNI	ACTGG	2 cut(s)	793, 1086
BseRI	GAGGAG	2 cut(s)	881, 884
BseXI	GCAGC	5 cut(s)	26, 645, 648, 824, 1060
BseYI	CCCAGC	2 cut(s)	384, 758
BsgI	GTGCAG	1 cut(s)	717
Bsh1236I	CGCG	1 cut(s)	769
BshFI	GGCC	4 cut(s)	656, 854, 1040, 1053
BsiHKAI	GWGCWC	2 cut(s)	723, 887
BsiHKCI	CYCGRG	1 cut(s)	688
BsiSI	CCGG	4 cut(s)	658, 689, 851, 1011
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	3 cut(s)	399, 599, 797
BsmAI	GTCTC	2 cut(s)	154, 787
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	4 cut(s)	656, 854, 1040, 1053
BsoBI	CYCGRG	1 cut(s)	688
Bsp1286I	GDGCHC	3 cut(s)	605, 723, 887
Bsp143I	GATC	6 cut(s)	16, 196, 235, 427, 680, 1027
Bsp19I	CCATGG	1 cut(s)	1055
BspANI	GGCC	4 cut(s)	656, 854, 1040, 1053
BspFNI	CGCG	1 cut(s)	769
BspHI	TCATGA	1 cut(s)	453
BspLI	GGNNCC	2 cut(s)	763, 802
BspPI	GGATC	3 cut(s)	24, 191, 675
BspTI	CTTAAG	1 cut(s)	518
BsrBI	CCGCTC	1 cut(s)	673
BsrFI	RCCGGY	1 cut(s)	850
BsrI	ACTGG	2 cut(s)	793, 1086
BssAI	RCCGGY	1 cut(s)	850
BssECI	CCNNGG	4 cut(s)	27, 688, 831, 1055
BssMI	GATC	6 cut(s)	16, 196, 235, 427, 680, 1027
BssT1I	CCWWGG	2 cut(s)	831, 1055
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	3 cut(s)	285, 328, 790
BstAFI	CTTAAG	1 cut(s)	518
BstC8I	GCNNGC	3 cut(s)	756, 852, 1042
BstDEI	CTNAG	2 cut(s)	363, 424
BstDSI	CCRYGG	2 cut(s)	27, 1055
BstF5I	GGATG	2 cut(s)	900, 937
BstFNI	CGCG	1 cut(s)	769
BstH2I	RGCGCY	1 cut(s)	391
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	6 cut(s)	19, 199, 238, 430, 683, 1030
BstMAI	GTCTC	2 cut(s)	154, 787
BstMBI	GATC	6 cut(s)	16, 196, 235, 427, 680, 1027
BstMWI	GCNNNNNNNGC	6 cut(s)	670, 775, 860, 1050, 1079, 1082
BstSCI	CCNGG	3 cut(s)	656, 687, 688
BstSFI	CTRYAG	1 cut(s)	625
BstUI	CGCG	1 cut(s)	769
BstV1I	GCAGC	5 cut(s)	26, 645, 648, 824, 1060
BstV2I	GAAGAC	4 cut(s)	12, 117, 546, 942
BstX2I	RGATCY	3 cut(s)	16, 196, 680
BstYI	RGATCY	3 cut(s)	16, 196, 680
BsuRI	GGCC	4 cut(s)	656, 854, 1040, 1053
BtgI	CCRYGG	2 cut(s)	27, 1055
BtgZI	GCGATG	1 cut(s)	993
BtrI	CACGTC	1 cut(s)	858
BtsCI	GGATG	2 cut(s)	900, 937
Cac8I	GCNNGC	3 cut(s)	756, 852, 1042
CaiI	CAGNNNCTG	1 cut(s)	39
CciI	TCATGA	1 cut(s)	453
CfoI	GCGC	1 cut(s)	390
Cfr10I	RCCGGY	1 cut(s)	850
Cfr13I	GGNCC	3 cut(s)	655, 762, 1052
Cfr9I	CCCGGG	1 cut(s)	688
CseI	GACGC	1 cut(s)	758
Csp6I	GTAC	3 cut(s)	403, 536, 949
CviAII	CATG	4 cut(s)	233, 454, 570, 1056
CviQI	GTAC	3 cut(s)	403, 536, 949
DdeI	CTNAG	2 cut(s)	363, 424
DpnI	GATC	6 cut(s)	18, 198, 237, 429, 682, 1029
DpnII	GATC	6 cut(s)	16, 196, 235, 427, 680, 1027
EaeI	YGGCCR	2 cut(s)	852, 1038
Eam1104I	CTCTTC	3 cut(s)	285, 328, 790
EarI	CTCTTC	3 cut(s)	285, 328, 790
EciI	GGCGGA	3 cut(s)	731, 878, 944
Eco130I	CCWWGG	2 cut(s)	831, 1055
Eco24I	GRGCYC	1 cut(s)	605
Eco47I	GGWCC	1 cut(s)	762
Eco47III	AGCGCT	1 cut(s)	389
Eco88I	CYCGRG	1 cut(s)	688
EcoT14I	CCWWGG	2 cut(s)	831, 1055
EcoT38I	GRGCYC	1 cut(s)	605
ErhI	CCWWGG	2 cut(s)	831, 1055
FaeI	CATG	4 cut(s)	236, 457, 573, 1059
FaiI	YATR	8 cut(s)	234, 455, 472, 571, 610, 653, 701, 1057
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	4 cut(s)	232, 453, 569, 1055
Fnu4HI	GCNGC	7 cut(s)	40, 634, 637, 838, 1051, 1074, 1083
FokI	GGATG	2 cut(s)	907, 944
FriOI	GRGCYC	1 cut(s)	605
Fsp4HI	GCNGC	7 cut(s)	40, 634, 637, 838, 1051, 1074, 1083
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	7 cut(s)	40, 634, 637, 838, 1051, 1074, 1083
GsaI	CCCAGC	2 cut(s)	388, 762
GsuI	CTGGAG	1 cut(s)	177
HaeII	RGCGCY	1 cut(s)	391
HaeIII	GGCC	4 cut(s)	656, 854, 1040, 1053
HapII	CCGG	4 cut(s)	658, 689, 851, 1011
HgaI	GACGC	1 cut(s)	758
HhaI	GCGC	1 cut(s)	390
Hin1II	CATG	4 cut(s)	236, 457, 573, 1059
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HincII	GTYRAC	1 cut(s)	137
HindII	GTYRAC	1 cut(s)	137
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	4 cut(s)	545, 739, 818, 919
HpaII	CCGG	4 cut(s)	658, 689, 851, 1011
HphI	GGTGA	6 cut(s)	13, 257, 597, 697, 734, 827
Hpy166II	GTNNAC	2 cut(s)	137, 765
Hpy188I	TCNGA	7 cut(s)	35, 559, 615, 685, 882, 1027, 1097
Hpy188III	TCNNGA	2 cut(s)	194, 454
Hpy8I	GTNNAC	2 cut(s)	137, 765
Hpy99I	CGWCG	2 cut(s)	850, 862
HpyAV	CCTTC	4 cut(s)	181, 285, 517, 995
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	857
HpyCH4V	TGCA	6 cut(s)	218, 232, 413, 504, 633, 734
HpyF10VI	GCNNNNNNNGC	6 cut(s)	670, 775, 860, 1050, 1079, 1082
HpyF3I	CTNAG	2 cut(s)	363, 424
HpySE526I	ACGT	1 cut(s)	857
Hsp92II	CATG	4 cut(s)	236, 457, 573, 1059
HspAI	GCGC	1 cut(s)	388
KroI	GCCGGC	1 cut(s)	850
KroNI	GCCGGC	1 cut(s)	852
Kzo9I	GATC	6 cut(s)	16, 196, 235, 427, 680, 1027
LmnI	GCTCC	6 cut(s)	47, 395, 670, 718, 871, 882
Lsp1109I	GCAGC	5 cut(s)	26, 645, 648, 824, 1060
LweI	GCATC	1 cut(s)	620
MaeII	ACGT	1 cut(s)	857
MaeIII	GTNAC	5 cut(s)	620, 703, 770, 805, 815
MalI	GATC	6 cut(s)	18, 198, 237, 429, 682, 1029
MbiI	CCGCTC	1 cut(s)	673
MboI	GATC	6 cut(s)	16, 196, 235, 427, 680, 1027
MfeI	CAATTG	1 cut(s)	219
MflI	RGATCY	3 cut(s)	16, 196, 680
MhlI	GDGCHC	3 cut(s)	605, 723, 887
MluCI	AATT	1 cut(s)	219
MluI	ACGCGT	1 cut(s)	767
MlyI	GAGTC	4 cut(s)	554, 733, 812, 928
MmeI	TCCRAC	3 cut(s)	177, 708, 860
MroNI	GCCGGC	1 cut(s)	850
MroXI	GAANNNNTTC	1 cut(s)	485
MseI	TTAA	2 cut(s)	204, 519
MslI	CAYNNNNRTG	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	542
MspCI	CTTAAG	1 cut(s)	518
MspI	CCGG	4 cut(s)	658, 689, 851, 1011
MspR9I	CCNGG	3 cut(s)	658, 689, 690
MunI	CAATTG	1 cut(s)	219
MvnI	CGCG	1 cut(s)	769
MwoI	GCNNNNNNNGC	6 cut(s)	670, 775, 860, 1050, 1079, 1082
NaeI	GCCGGC	1 cut(s)	852
NciI	CCSGG	3 cut(s)	658, 689, 690
NcoI	CCATGG	1 cut(s)	1055
NdeII	GATC	6 cut(s)	16, 196, 235, 427, 680, 1027
NgoMIV	GCCGGC	1 cut(s)	850
NlaIII	CATG	4 cut(s)	236, 457, 573, 1059
NlaIV	GGNNCC	2 cut(s)	763, 802
NmuCI	GTSAC	4 cut(s)	703, 770, 805, 815
OliI	CACNNNNGTG	1 cut(s)	26
PagI	TCATGA	1 cut(s)	453
PcsI	WCGNNNNNNNCGW	1 cut(s)	854
PdiI	GCCGGC	1 cut(s)	852
PdmI	GAANNNNTTC	1 cut(s)	485
PkrI	GCNGC	7 cut(s)	41, 635, 638, 839, 1052, 1075, 1084
PleI	GAGTC	4 cut(s)	553, 733, 812, 927
PpsI	GAGTC	4 cut(s)	553, 733, 812, 927
PspFI	CCCAGC	2 cut(s)	384, 758
PspN4I	GGNNCC	2 cut(s)	763, 802
PspPI	GGNCC	3 cut(s)	655, 762, 1052
PstNI	CAGNNNCTG	1 cut(s)	39
PsuI	RGATCY	3 cut(s)	16, 196, 680
RsaI	GTAC	3 cut(s)	404, 537, 950
RsaNI	GTAC	3 cut(s)	403, 536, 949
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	204, 519
SatI	GCNGC	7 cut(s)	40, 634, 637, 838, 1051, 1074, 1083
Sau3AI	GATC	6 cut(s)	16, 196, 235, 427, 680, 1027
Sau96I	GGNCC	3 cut(s)	655, 762, 1052
ScaI	AGTACT	1 cut(s)	950
SchI	GAGTC	4 cut(s)	554, 733, 812, 928
ScrFI	CCNGG	3 cut(s)	658, 689, 690
SduI	GDGCHC	3 cut(s)	605, 723, 887
SfaNI	GCATC	1 cut(s)	620
SfcI	CTRYAG	1 cut(s)	625
SinI	GGWCC	1 cut(s)	762
SmaI	CCCGGG	1 cut(s)	690
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse9I	AATT	1 cut(s)	219
SspI	AATATT	1 cut(s)	484
StyD4I	CCNGG	3 cut(s)	656, 687, 688
StyI	CCWWGG	2 cut(s)	831, 1055
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	1 cut(s)	860
TasI	AATT	1 cut(s)	219
TatI	WGTACW	1 cut(s)	948
TauI	GCSGC	2 cut(s)	1053, 1085
Tru1I	TTAA	2 cut(s)	204, 519
Tru9I	TTAA	2 cut(s)	204, 519
TseFI	GTSAC	4 cut(s)	703, 770, 805, 815
TseI	GCWGC	5 cut(s)	39, 633, 636, 837, 1073
Tsp45I	GTSAC	4 cut(s)	703, 770, 805, 815
TspDTI	ATGAA	6 cut(s)	79, 117, 442, 470, 688, 948
TspGWI	ACGGA	3 cut(s)	597, 793, 834
TspMI	CCCGGG	1 cut(s)	688
Vha464I	CTTAAG	1 cut(s)	518
VpaK11BI	GGWCC	1 cut(s)	762
XmaI	CCCGGG	1 cut(s)	688
XmnI	GAANNNNTTC	1 cut(s)	485
ZrmI	AGTACT	1 cut(s)	950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.