Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0013949

Physical Location & Seq

Genomic Coordinates Reverse (-)

18815423 .. 18816949

Gene Structure 1527 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1131400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGAGGACGATTGGGATCTTCAAGCGGTGGTCAGAGGCTGCTTCACCGCCACCACCACAAGCAACACCACTACAACATCCACCAGAGCCTCCTCCGCTGCCGCCACCACAAGTCTCAACATCTCTGGCTTCCATTCAAACCCAGCAGCTGCTTCCTTCTCTTCATTTGATCAAACTTCTCAACAACAGCAACTCCTCTTCTCTCTTCCACTTCCAGATCCCATCATTAAACCCAGAAGTGCCATTGAAGAACTACATGACCTTTGCAGGCCCTTCTACCCCAAATCTCAGCCTCCTCTGTCCTCCCCACAAATCACACCACCCACTCTCTCTCCCTTGGCTTCTCTCTCTTCTCTGACCACACCCGAAGATCAAACACATCCCATACAATATCACCGCCAACAACAAACCCAGCACTCCAAGCCATCGTCTTCCACCACCGCACGATCCAAAAAAAGAAAGAACCAGCTTAAAAAAGTGTGCCAAGTTCCGGCGGAGGGTCTCTCTTCAGACATATGGGCATGGCGGAAGTACGGCCAAAAGCCCATCAAGGGCTCCCCATATCCAAGGGGATATTACAGATGTAGCAGCTCAAAGGGTTGTATGGCCCGGAAGCAAGTGGAGCGGAACAAGTCCGACCCGAATATTTTTATAGTCACCTACACGGCGGAGCACAACCACCCGGCCCCGACTCACCGCAACTCGCTCGCCGGCTCCACGCGCCAGAAGCCCCTCTCCCCACAAACAACCACGGGCGGTGACTCTGCGAAACCCACATCTCCGACAACCTCGGCTTCCGTGGACGAGGAGCCTATCGTTGCAGCTCGGAGTACGACCGTGGAAAGCAGCTGCAAGGAGGAGAAGGGGAGTCCTTTGATTACCGACGAGGAGGACGAGTTGTTGGGGATGTGCGGCTCGGTAGTGAGTGACGATTTCTTTGTAGGGTTGGACGGTCTGGCCGAAGATTACTTCTCCGATCACTCGCCGGTGAGCTTCGGCATGCCTTGGATTTCCAGTAGTGCTGCCACTGCTGCTGGTAGTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009889 GO:0010033 GO:0010150 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

349

Amino Acids

37.66

Weight (kDa)

6.75

Isoelectric Point (pI)

56.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	171 - 228	4.6e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01250
fragaria_vesca	FvH4_7g15350
malus_domestica	MD01G1071300.v1.1 MD07G1131400.v1.1
prunus_persica	Prupe.2G177400_v2.0.a1
pyrus_communis	pycom01g10030
rosa_chinensis	RchiOBHm_Chr1g0357671
rosa_laevigata	RLG00000028008
rosa_multiflora	Rmu_co8407323.1_g000001 Rmu_ssc0000425.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298610
rosa_rugosa	Rorug01G0257600
rosa_samantha	Rh1AG271600 Rh1BG238700 Rh1CG255500 Rh1DG267100
rosa_wichuraiana	Rw1G024220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	625
AccII	CGCG	1 cut(s)	721
AclWI	GGATC	3 cut(s)	24, 212, 441
AcoI	YGGCCR	2 cut(s)	535, 957
AcuI	CTGAAG	1 cut(s)	492
AfaI	GTAC	2 cut(s)	533, 832
AfiI	CCNNNNNNNGG	3 cut(s)	490, 497, 551
AgsI	TTSAA	3 cut(s)	23, 138, 248
AluBI	AGCT	6 cut(s)	149, 469, 591, 824, 849, 993
AluI	AGCT	6 cut(s)	149, 469, 591, 824, 849, 993
Alw21I	GWGCWC	1 cut(s)	675
Alw26I	GTCTC	2 cut(s)	119, 506
AlwI	GGATC	3 cut(s)	24, 212, 441
AlwNI	CAGNNNCTG	2 cut(s)	39, 149
AoxI	GGCC	5 cut(s)	269, 535, 606, 684, 957
ArsI	GACNNNNNNTTYG	2 cut(s)	920, 952
AspLEI	GCGC	1 cut(s)	723
AspS9I	GGNCC	3 cut(s)	270, 607, 685
AsuC2I	CCSGG	2 cut(s)	610, 683
AsuHPI	GGTGA	6 cut(s)	37, 386, 649, 686, 770, 1000
BanII	GRGCYC	1 cut(s)	557
BbsI	GAAGAC	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	675
BccI	CCATC	3 cut(s)	230, 433, 554
BceAI	ACGGC	2 cut(s)	550, 681
BcgI	CGANNNNNNTGC	2 cut(s)	688, 722
BclI	TGATCA	1 cut(s)	169
BcnI	CCSGG	2 cut(s)	610, 683
BcoDI	GTCTC	2 cut(s)	119, 506
Bme1390I	CCNGG	2 cut(s)	610, 683
BmgT120I	GGNCC	3 cut(s)	270, 607, 685
BmiI	GGNNCC	4 cut(s)	556, 687, 715, 810
BmrFI	CCNGG	2 cut(s)	610, 683
BpiI	GAAGAC	1 cut(s)	423
BplI	GAGNNNNNCTC	2 cut(s)	488, 520
BpuMI	CCSGG	2 cut(s)	610, 683
BsaBI	GATNNNNATC	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	506
BsaJI	CCNNGG	7 cut(s)	336, 566, 750, 789, 798, 837, 1004
BsaXI	ACNNNNNCTCC	6 cut(s)	177, 207, 316, 346, 881, 911
Bsc4I	CCNNNNNNNGG	3 cut(s)	490, 497, 551
Bse118I	RCCGGY	2 cut(s)	710, 985
Bse1I	ACTGG	1 cut(s)	1014
Bse8I	GATNNNNATC	1 cut(s)	15
BseDI	CCNNGG	7 cut(s)	336, 566, 750, 789, 798, 837, 1004
BseGI	GGATG	3 cut(s)	77, 379, 912
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	3 cut(s)	490, 497, 551
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	1014
BseRI	GAGGAG	6 cut(s)	82, 185, 285, 821, 872, 902
BseYI	CCCAGC	2 cut(s)	142, 411
Bsh1236I	CGCG	1 cut(s)	721
Bsh1285I	CGRYCG	1 cut(s)	837
BshFI	GGCC	5 cut(s)	271, 537, 608, 686, 959
BsiEI	CGRYCG	1 cut(s)	837
BsiHKAI	GWGCWC	1 cut(s)	675
BsiSI	CCGG	5 cut(s)	491, 610, 683, 711, 986
BslI	CCNNNNNNNGG	3 cut(s)	490, 497, 551
BsmAI	GTCTC	2 cut(s)	119, 506
BsnI	GGCC	5 cut(s)	271, 537, 608, 686, 959
Bso31I	GGTCTC	1 cut(s)	506
Bsp1286I	GDGCHC	2 cut(s)	557, 675
Bsp143I	GATC	6 cut(s)	16, 169, 217, 370, 446, 976
BspANI	GGCC	5 cut(s)	271, 537, 608, 686, 959
BspCNI	CTCAG	1 cut(s)	301
BspFNI	CGCG	1 cut(s)	721
BspLI	GGNNCC	4 cut(s)	556, 687, 715, 810
BspPI	GGATC	3 cut(s)	24, 212, 441
BspTNI	GGTCTC	1 cut(s)	506
BsrBI	CCGCTC	1 cut(s)	625
BsrFI	RCCGGY	2 cut(s)	710, 985
BsrI	ACTGG	1 cut(s)	1014
BssAI	RCCGGY	2 cut(s)	710, 985
BssECI	CCNNGG	7 cut(s)	336, 566, 750, 789, 798, 837, 1004
BssMI	GATC	6 cut(s)	16, 169, 217, 370, 446, 976
BssT1I	CCWWGG	3 cut(s)	336, 566, 1004
Bst4CI	ACNGT	2 cut(s)	838, 953
Bst6I	CTCTTC	5 cut(s)	166, 203, 210, 355, 511
BstC8I	GCNNGC	4 cut(s)	269, 708, 712, 1001
BstDEI	CTNAG	1 cut(s)	288
BstDSI	CCRYGG	3 cut(s)	750, 798, 837
BstF5I	GGATG	3 cut(s)	77, 379, 912
BstFNI	CGCG	1 cut(s)	721
BstHHI	GCGC	1 cut(s)	723
BstKTI	GATC	6 cut(s)	19, 172, 220, 373, 449, 979
BstMAI	GTCTC	2 cut(s)	119, 506
BstMBI	GATC	6 cut(s)	16, 169, 217, 370, 446, 976
BstMCI	CGRYCG	1 cut(s)	837
BstMWI	GCNNNNNNNGC	7 cut(s)	95, 421, 622, 720, 727, 1028, 1031
BstNSI	RCATGY	1 cut(s)	1003
BstSCI	CCNGG	2 cut(s)	608, 681
BstUI	CGCG	1 cut(s)	721
BstV2I	GAAGAC	1 cut(s)	423
BstX2I	RGATCY	2 cut(s)	16, 217
BstYI	RGATCY	2 cut(s)	16, 217
BsuRI	GGCC	5 cut(s)	271, 537, 608, 686, 959
BtgI	CCRYGG	3 cut(s)	750, 798, 837
BtsCI	GGATG	3 cut(s)	77, 379, 912
BtsI	GCAGTG	1 cut(s)	1026
BtsIMutI	CAGTG	1 cut(s)	1026
Cac8I	GCNNGC	4 cut(s)	269, 708, 712, 1001
CaiI	CAGNNNCTG	2 cut(s)	39, 149
CfoI	GCGC	1 cut(s)	723
Cfr10I	RCCGGY	2 cut(s)	710, 985
Cfr13I	GGNCC	3 cut(s)	270, 607, 685
Csp6I	GTAC	2 cut(s)	532, 831
CviAII	CATG	3 cut(s)	257, 522, 1000
CviQI	GTAC	2 cut(s)	532, 831
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	6 cut(s)	18, 171, 219, 372, 448, 978
DpnII	GATC	6 cut(s)	16, 169, 217, 370, 446, 976
EaeI	YGGCCR	2 cut(s)	535, 957
Eam1104I	CTCTTC	5 cut(s)	166, 203, 210, 355, 511
EarI	CTCTTC	5 cut(s)	166, 203, 210, 355, 511
EciI	GGCGGA	3 cut(s)	509, 541, 683
Eco130I	CCWWGG	3 cut(s)	336, 566, 1004
Eco24I	GRGCYC	1 cut(s)	557
Eco31I	GGTCTC	1 cut(s)	506
Eco57I	CTGAAG	1 cut(s)	492
EcoO109I	RGGNCCY	1 cut(s)	270
EcoT14I	CCWWGG	3 cut(s)	336, 566, 1004
EcoT38I	GRGCYC	1 cut(s)	557
ErhI	CCWWGG	3 cut(s)	336, 566, 1004
FaeI	CATG	3 cut(s)	260, 525, 1003
FaiI	YATR	9 cut(s)	258, 386, 515, 517, 523, 562, 605, 653, 1001
FatI	CATG	3 cut(s)	256, 521, 999
FauNDI	CATATG	1 cut(s)	515
FbaI	TGATCA	1 cut(s)	169
FokI	GGATG	3 cut(s)	64, 366, 919
FriOI	GRGCYC	1 cut(s)	557
GlaI	GCGC	1 cut(s)	722
GsaI	CCCAGC	2 cut(s)	146, 415
HaeIII	GGCC	5 cut(s)	271, 537, 608, 686, 959
HapII	CCGG	5 cut(s)	491, 610, 683, 711, 986
HhaI	GCGC	1 cut(s)	723
Hin1II	CATG	3 cut(s)	260, 525, 1003
Hin6I	GCGC	1 cut(s)	721
HinP1I	GCGC	1 cut(s)	721
HinfI	GANTC	3 cut(s)	691, 761, 868
HpaII	CCGG	5 cut(s)	491, 610, 683, 711, 986
HphI	GGTGA	6 cut(s)	37, 386, 649, 686, 770, 1000
Hpy166II	GTNNAC	1 cut(s)	802
Hpy188I	TCNGA	8 cut(s)	35, 357, 511, 637, 783, 828, 976, 1046
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	1 cut(s)	802
Hpy99I	CGWCG	1 cut(s)	887
HpyAV	CCTTC	3 cut(s)	166, 283, 856
HpyCH4III	ACNGT	2 cut(s)	838, 953
HpyCH4V	TGCA	3 cut(s)	267, 821, 852
HpyF10VI	GCNNNNNNNGC	7 cut(s)	95, 421, 622, 720, 727, 1028, 1031
HpyF3I	CTNAG	1 cut(s)	288
Hsp92II	CATG	3 cut(s)	260, 525, 1003
HspAI	GCGC	1 cut(s)	721
KroI	GCCGGC	1 cut(s)	710
KroNI	GCCGGC	1 cut(s)	712
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	6 cut(s)	16, 169, 217, 370, 446, 976
LmnI	GCTCC	5 cut(s)	560, 622, 670, 719, 808
MaeIII	GTNAC	3 cut(s)	655, 758, 926
MalI	GATC	6 cut(s)	18, 171, 219, 372, 448, 978
MbiI	CCGCTC	1 cut(s)	625
MboI	GATC	6 cut(s)	16, 169, 217, 370, 446, 976
MflI	RGATCY	2 cut(s)	16, 217
MhlI	GDGCHC	2 cut(s)	557, 675
MlyI	GAGTC	3 cut(s)	685, 755, 877
MmeI	TCCRAC	3 cut(s)	660, 806, 927
MroNI	GCCGGC	1 cut(s)	710
MseI	TTAA	2 cut(s)	228, 471
MspA1I	CMGCKG	3 cut(s)	98, 149, 849
MspI	CCGG	5 cut(s)	491, 610, 683, 711, 986
MspR9I	CCNGG	2 cut(s)	610, 683
MvnI	CGCG	1 cut(s)	721
MwoI	GCNNNNNNNGC	7 cut(s)	95, 421, 622, 720, 727, 1028, 1031
NaeI	GCCGGC	1 cut(s)	712
NciI	CCSGG	2 cut(s)	610, 683
NdeI	CATATG	1 cut(s)	515
NdeII	GATC	6 cut(s)	16, 169, 217, 370, 446, 976
NgoMIV	GCCGGC	1 cut(s)	710
NlaIII	CATG	3 cut(s)	260, 525, 1003
NlaIV	GGNNCC	4 cut(s)	556, 687, 715, 810
NmeAIII	GCCGAG	1 cut(s)	770
NmuCI	GTSAC	3 cut(s)	655, 758, 926
NspI	RCATGY	1 cut(s)	1003
PaeI	GCATGC	1 cut(s)	1003
PcsI	WCGNNNNNNNCGW	2 cut(s)	891, 957
PdiI	GCCGGC	1 cut(s)	712
PleI	GAGTC	3 cut(s)	685, 755, 876
PpsI	GAGTC	3 cut(s)	685, 755, 876
PspFI	CCCAGC	2 cut(s)	142, 411
PspN4I	GGNNCC	4 cut(s)	556, 687, 715, 810
PspPI	GGNCC	3 cut(s)	270, 607, 685
PstNI	CAGNNNCTG	2 cut(s)	39, 149
PsuI	RGATCY	2 cut(s)	16, 217
PvuII	CAGCTG	2 cut(s)	149, 849
RsaI	GTAC	2 cut(s)	533, 832
RsaNI	GTAC	2 cut(s)	532, 831
SaqAI	TTAA	2 cut(s)	228, 471
Sau3AI	GATC	6 cut(s)	16, 169, 217, 370, 446, 976
Sau96I	GGNCC	3 cut(s)	270, 607, 685
SchI	GAGTC	3 cut(s)	685, 755, 877
ScrFI	CCNGG	2 cut(s)	610, 683
SduI	GDGCHC	2 cut(s)	557, 675
SetI	ASST	9 cut(s)	151, 264, 471, 593, 662, 791, 826, 851, 995
SgrAI	CRCCGGYG	1 cut(s)	985
SphI	GCATGC	1 cut(s)	1003
SspI	AATATT	1 cut(s)	646
StyD4I	CCNGG	2 cut(s)	608, 681
StyI	CCWWGG	3 cut(s)	336, 566, 1004
TaaI	ACNGT	2 cut(s)	838, 953
TauI	GCSGC	2 cut(s)	104, 915
Tru1I	TTAA	2 cut(s)	228, 471
Tru9I	TTAA	2 cut(s)	228, 471
TscAI	CASTG	1 cut(s)	1033
TseFI	GTSAC	3 cut(s)	655, 758, 926
Tsp45I	GTSAC	3 cut(s)	655, 758, 926
TspDTI	ATGAA	1 cut(s)	153
TspGWI	ACGGA	1 cut(s)	787
TspRI	CASTG	1 cut(s)	1033
XceI	RCATGY	1 cut(s)	1003

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.