Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0015757

Physical Location & Seq

Genomic Coordinates Reverse (-)

13164563 .. 13165563

Gene Structure 1001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022840

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGAAGAATACCAGTAACTTGGATTATGTTTTTATTGGAATTGAAAATGAGAGGCCTGAAGCTTATGGTTTTGTTGTTAATGAATATTACACGGATAGTGGTGATCGTATCGAGACATGGTGGGTAACTGGTAGTGGTTCAAAGTATGCTAAGCTAATACTCCAATCTAATTACAACGATAACATGTCTGAGCAAGTTACATTGCAATTGGCTGAACTGTCTTTATTATCTTCAACCTCATGTGATCCCCTTACCAGGGGATATCTACATGTATCTGTATTTGACTCAAACGGATTAAGAGATGTGTATTCCAAGCCTACATTGGAGGTGTATTTGAGTTACCACAAACACTCGGATGAGTTCCATTCAAGAACAATTTACATATTTTCTATTGGCCAGATTGGTGACGCTGTAGTGACTCAGTGGTTTAGTTCTGGATGTCTTATTCAACCAATTGATGTGATGGTCGTACATCCTATGGGACATGTTCGGGGATATATTATTCGTCGTGTGGTTTTGAAGAACAAAGATGCTTCAACCATAATTGAAGAACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Proteasome

Protein Analysis

186

Amino Acids

21.1

Weight (kDa)

5.46

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015757)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0002241
rosa_laevigata	RLG00000018969 RLG00000022840 RLG00000031011
rosa_multiflora	Rmu_sc0004683.1_g000002 Rmu_sc0013155.1_g000007 Rmu_sc0013544.1_g000005
rosa_roxburghii	Rroxscaffold_1G00073690 Rroxscaffold_1G00073730 Rroxscaffold_2G00125930
rosa_rugosa	Rorug01G0257600
rosa_samantha	Rh1BG238500 Rh1BG238600 Rh1DG266800 Rh1DG266900 Rh5DG014400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	553
AclWI	GGATC	1 cut(s)	239
AcoI	YGGCCR	1 cut(s)	394
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	1 cut(s)	471
AfiI	CCNNNNNNNGG	2 cut(s)	255, 256
AflIII	ACRYGT	3 cut(s)	183, 268, 484
AgsI	TTSAA	8 cut(s)	44, 141, 234, 369, 449, 520, 537, 548
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	2 cut(s)	62, 154
AluI	AGCT	2 cut(s)	62, 154
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	239
AoxI	GGCC	2 cut(s)	53, 394
AsuHPI	GGTGA	2 cut(s)	113, 416
BalI	TGGCCA	1 cut(s)	396
BccI	CCATC	1 cut(s)	457
BciT130I	CCWGG	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	411
BlpI	GCTNAGC	1 cut(s)	150
Bme1390I	CCNGG	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	256
BmsI	GCATC	1 cut(s)	520
Bpu1102I	GCTNAGC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 256
Bse1I	ACTGG	2 cut(s)	12, 133
Bse3DI	GCAATG	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	3 cut(s)	361, 443, 472
BseLI	CCNNNNNNNGG	2 cut(s)	255, 256
BseMI	GCAATG	1 cut(s)	200
BseMII	CTCAG	2 cut(s)	180, 434
BseNI	ACTGG	2 cut(s)	12, 133
BshFI	GGCC	2 cut(s)	55, 396
BslFI	GGGAC	1 cut(s)	495
BslI	CCNNNNNNNGG	2 cut(s)	255, 256
BsmAI	GTCTC	1 cut(s)	107
BsmFI	GGGAC	1 cut(s)	495
BsnI	GGCC	2 cut(s)	55, 396
Bsp143I	GATC	2 cut(s)	103, 244
Bsp1720I	GCTNAGC	1 cut(s)	150
BspANI	GGCC	2 cut(s)	55, 396
BspCNI	CTCAG	2 cut(s)	181, 433
BspPI	GGATC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	12, 133
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	2 cut(s)	103, 244
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	1 cut(s)	219
BstDEI	CTNAG	3 cut(s)	150, 189, 420
BstF5I	GGATG	3 cut(s)	361, 443, 472
BstKTI	GATC	2 cut(s)	106, 247
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	2 cut(s)	103, 244
BstNI	CCWGG	1 cut(s)	256
BstNSI	RCATGY	3 cut(s)	187, 272, 488
BstSCI	CCNGG	1 cut(s)	254
BstSFI	CTRYAG	1 cut(s)	411
BstXI	CCANNNNNNTGG	1 cut(s)	19
BsuRI	GGCC	2 cut(s)	55, 396
BtsCI	GGATG	3 cut(s)	361, 443, 472
BtsIMutI	CAGTG	1 cut(s)	428
CseI	GACGC	1 cut(s)	416
Csp6I	GTAC	1 cut(s)	470
CviAII	CATG	5 cut(s)	117, 184, 240, 269, 485
CviJI	RGCY	6 cut(s)	55, 62, 154, 212, 316, 396
CviKI_1	RGCY	6 cut(s)	55, 62, 154, 212, 316, 396
CviQI	GTAC	1 cut(s)	470
DdeI	CTNAG	3 cut(s)	150, 189, 420
DpnI	GATC	2 cut(s)	105, 246
DpnII	GATC	2 cut(s)	103, 244
EaeI	YGGCCR	1 cut(s)	394
Eco147I	AGGCCT	1 cut(s)	55
Eco32I	GATATC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	254
EcoRV	GATATC	1 cut(s)	263
FaeI	CATG	5 cut(s)	120, 187, 243, 272, 488
FaqI	GGGAC	1 cut(s)	495
FatI	CATG	5 cut(s)	116, 183, 239, 268, 484
FokI	GGATG	3 cut(s)	368, 450, 459
HaeIII	GGCC	2 cut(s)	55, 396
HgaI	GACGC	1 cut(s)	416
Hin1II	CATG	5 cut(s)	120, 187, 243, 272, 488
HindIII	AAGCTT	1 cut(s)	60
HinfI	GANTC	2 cut(s)	284, 418
HphI	GGTGA	2 cut(s)	113, 416
Hpy188I	TCNGA	2 cut(s)	190, 355
Hpy188III	TCNNGA	3 cut(s)	112, 369, 435
Hpy99I	CGWCG	1 cut(s)	510
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4IV	ACGT	1 cut(s)	553
HpyCH4V	TGCA	1 cut(s)	205
HpyF3I	CTNAG	3 cut(s)	150, 189, 420
HpySE526I	ACGT	1 cut(s)	553
Hsp92II	CATG	5 cut(s)	120, 187, 243, 272, 488
Kzo9I	GATC	2 cut(s)	103, 244
LpnPI	CCDG	7 cut(s)	25, 69, 114, 241, 268, 410, 420
LweI	GCATC	1 cut(s)	520
MaeII	ACGT	1 cut(s)	553
MaeIII	GTNAC	6 cut(s)	14, 124, 196, 338, 404, 415
MalI	GATC	2 cut(s)	105, 246
MboI	GATC	2 cut(s)	103, 244
MboII	GAAGA	3 cut(s)	16, 222, 532
MfeI	CAATTG	2 cut(s)	206, 453
MlsI	TGGCCA	1 cut(s)	396
MluCI	AATT	6 cut(s)	39, 169, 206, 375, 453, 543
MluNI	TGGCCA	1 cut(s)	396
MlyI	GAGTC	2 cut(s)	278, 412
MnlI	CCTC	3 cut(s)	45, 247, 319
Mox20I	TGGCCA	1 cut(s)	396
MscI	TGGCCA	1 cut(s)	396
MseI	TTAA	3 cut(s)	78, 296, 556
MslI	CAYNNNNRTG	1 cut(s)	354
Msp20I	TGGCCA	1 cut(s)	396
MspR9I	CCNGG	1 cut(s)	256
MunI	CAATTG	2 cut(s)	206, 453
MvaI	CCWGG	1 cut(s)	256
NdeII	GATC	2 cut(s)	103, 244
NlaIII	CATG	5 cut(s)	120, 187, 243, 272, 488
NmuCI	GTSAC	2 cut(s)	404, 415
NspI	RCATGY	3 cut(s)	187, 272, 488
PceI	AGGCCT	1 cut(s)	55
PciI	ACATGT	3 cut(s)	183, 268, 484
PleI	GAGTC	2 cut(s)	278, 412
PpsI	GAGTC	2 cut(s)	278, 412
PscI	ACATGT	3 cut(s)	183, 268, 484
Psp1406I	AACGTT	1 cut(s)	553
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
RsaI	GTAC	1 cut(s)	471
RsaNI	GTAC	1 cut(s)	470
RseI	CAYNNNNRTG	1 cut(s)	354
SaqAI	TTAA	3 cut(s)	78, 296, 556
Sau3AI	GATC	2 cut(s)	103, 244
SchI	GAGTC	2 cut(s)	278, 412
ScrFI	CCNGG	1 cut(s)	256
SetI	ASST	5 cut(s)	64, 156, 239, 330, 556
SfaNI	GCATC	1 cut(s)	520
SfcI	CTRYAG	1 cut(s)	411
SmiMI	CAYNNNNRTG	1 cut(s)	354
Sse9I	AATT	6 cut(s)	39, 169, 206, 375, 453, 543
SseBI	AGGCCT	1 cut(s)	55
SspI	AATATT	1 cut(s)	86
StuI	AGGCCT	1 cut(s)	55
StyD4I	CCNGG	1 cut(s)	254
TaaI	ACNGT	1 cut(s)	219
TaiI	ACGT	1 cut(s)	556
TaqI	TCGA	1 cut(s)	111
TasI	AATT	6 cut(s)	39, 169, 206, 375, 453, 543
Tru1I	TTAA	3 cut(s)	78, 296, 556
Tru9I	TTAA	3 cut(s)	78, 296, 556
TscAI	CASTG	1 cut(s)	428
TseFI	GTSAC	2 cut(s)	404, 415
Tsp45I	GTSAC	2 cut(s)	404, 415
TspDTI	ATGAA	2 cut(s)	17, 96
TspGWI	ACGGA	2 cut(s)	107, 306
TspRI	CASTG	1 cut(s)	428
XceI	RCATGY	3 cut(s)	187, 272, 488
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.