Rh1DG266800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
48379505 .. 48379855
351 bp
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UTR
Exon/CDS
Intron
Rh1DG266800.1

Sequence Viewer

Length: 351 bp
ATGGGTTCGGGATCGGAACTTGCAGCCCAAAATTTGTTCGATGAATTGCAAAAGCAGTACATGGAGAAGAAAAACTCTGGTATTGAACTAACTCTCAAAGAAATTGCGGATTATGGTTTGAAGCATGCCCGGACAATGAAGAATACCAGTAACTCGGCTTATGTTTTTATTGGAATTGAAAATGAGAGGCACGAAGCTTATGGTTTTGTTGTTAATGAATATTACATAAATAGTAGTGATCATATCGAGACATGTTGGGCAACTGGCAGTGGTTCAAAGTATGCTAAGCCAATACTCCAAGCTAATTACAACGATAACTTGTCTGAGCAACTTACATTGCAATTGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.06

Weight (kDa)

5.1

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 107
AclWI GGATC 1 cut(s) 19
AcsI RAATTY 1 cut(s) 31
AfaI GTAC 1 cut(s) 59
AflIII ACRYGT 1 cut(s) 251
AgsI TTSAA 4 cut(s) 86, 121, 179, 276
AluBI AGCT 2 cut(s) 197, 302
AluI AGCT 2 cut(s) 197, 302
Alw26I GTCTC 1 cut(s) 242
AlwI GGATC 1 cut(s) 19
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 31
AsuC2I CCSGG 1 cut(s) 130
BbvI GCAGC 1 cut(s) 35
BclI TGATCA 1 cut(s) 238
BcnI CCSGG 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 242
BisI GCNGC 1 cut(s) 24
BlpI GCTNAGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 25
Bme1390I CCNGG 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 130
Bpu1102I GCTNAGC 1 cut(s) 285
BpuMI CCSGG 1 cut(s) 130
Bse1I ACTGG 2 cut(s) 147, 268
Bse3DI GCAATG 1 cut(s) 335
BseMI GCAATG 1 cut(s) 335
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 2 cut(s) 147, 268
BseXI GCAGC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 130
BsmAI GTCTC 1 cut(s) 242
Bsp143I GATC 2 cut(s) 11, 238
Bsp1720I GCTNAGC 1 cut(s) 285
BspACI CCGC 1 cut(s) 107
BspCNI CTCAG 1 cut(s) 316
BspPI GGATC 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 335
BsrI ACTGG 2 cut(s) 147, 268
BssMI GATC 2 cut(s) 11, 238
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 2 cut(s) 285, 324
BstKTI GATC 2 cut(s) 14, 241
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 2 cut(s) 11, 238
BstNSI RCATGY 2 cut(s) 128, 255
BstSCI CCNGG 1 cut(s) 128
BstV1I GCAGC 1 cut(s) 35
BtsI GCAGTG 1 cut(s) 274
BtsIMutI CAGTG 1 cut(s) 274
Cac8I GCNNGC 1 cut(s) 126
Csp6I GTAC 1 cut(s) 58
CviAII CATG 3 cut(s) 61, 125, 252
CviJI RGCY 6 cut(s) 26, 158, 197, 289, 302, 347
CviKI_1 RGCY 6 cut(s) 26, 158, 197, 289, 302, 347
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 2 cut(s) 285, 324
DpnI GATC 2 cut(s) 13, 240
DpnII GATC 2 cut(s) 11, 238
FaeI CATG 3 cut(s) 64, 128, 255
FaiI YATR 9 cut(s) 62, 114, 126, 162, 201, 227, 243, 253, 282
FatI CATG 3 cut(s) 60, 124, 251
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 1 cut(s) 24
Fsp4HI GCNGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 24
HapII CCGG 1 cut(s) 130
Hin1II CATG 3 cut(s) 64, 128, 255
HindIII AAGCTT 1 cut(s) 195
HpaII CCGG 1 cut(s) 130
Hpy188I TCNGA 2 cut(s) 16, 325
Hpy188III TCNNGA 2 cut(s) 9, 247
HpyCH4V TGCA 3 cut(s) 23, 49, 340
HpyF3I CTNAG 2 cut(s) 285, 324
Hsp92II CATG 3 cut(s) 64, 128, 255
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 2 cut(s) 11, 238
LpnPI CCDG 4 cut(s) 63, 143, 160, 249
Lsp1109I GCAGC 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 149
MalI GATC 2 cut(s) 13, 240
MboI GATC 2 cut(s) 11, 238
MboII GAAGA 2 cut(s) 79, 151
MfeI CAATTG 1 cut(s) 341
MluCI AATT 6 cut(s) 31, 44, 102, 174, 304, 341
MnlI CCTC 1 cut(s) 180
MseI TTAA 2 cut(s) 213, 349
MspI CCGG 1 cut(s) 130
MspR9I CCNGG 1 cut(s) 130
MunI CAATTG 1 cut(s) 341
NciI CCSGG 1 cut(s) 130
NdeII GATC 2 cut(s) 11, 238
NlaIII CATG 3 cut(s) 64, 128, 255
NmeAIII GCCGAG 1 cut(s) 134
NspI RCATGY 2 cut(s) 128, 255
PaeI GCATGC 1 cut(s) 128
PciI ACATGT 1 cut(s) 251
PkrI GCNGC 1 cut(s) 25
PscI ACATGT 1 cut(s) 251
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
SaqAI TTAA 2 cut(s) 213, 349
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 2 cut(s) 11, 238
ScrFI CCNGG 1 cut(s) 130
SetI ASST 2 cut(s) 199, 304
SphI GCATGC 1 cut(s) 128
Sse9I AATT 6 cut(s) 31, 44, 102, 174, 304, 341
SsiI CCGC 1 cut(s) 107
SspI AATATT 1 cut(s) 221
StyD4I CCNGG 1 cut(s) 128
TaqI TCGA 2 cut(s) 39, 246
TasI AATT 6 cut(s) 31, 44, 102, 174, 304, 341
TatI WGTACW 1 cut(s) 57
Tru1I TTAA 2 cut(s) 213, 349
Tru9I TTAA 2 cut(s) 213, 349
TscAI CASTG 1 cut(s) 274
TseI GCWGC 1 cut(s) 23
TspDTI ATGAA 3 cut(s) 57, 152, 231
TspRI CASTG 1 cut(s) 274
XapI RAATTY 1 cut(s) 31
XceI RCATGY 2 cut(s) 128, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.