RLG00000019784

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014649
Physical Location & Seq
Forward (+)
56727384 .. 56730433
3050 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019784

Sequence Viewer

Length: 1011 bp
ATGGCGACGGCGGCTACTAACCTGCTCCTCCAAACAAACCCATTGAAGTGGAAGCAATGCTACCCAAATCGGTTCCGCCTCCTTCGTCCTCTCTCGGCCCAACCAGTCAAGCTCAGTGCAACCTTCAACCAAATTAAGCTTCAATCCTTGGAGAAGAGCCGCTTGATCGCAACCAACCCGAAATCAAAATCAGCGGCCGAATCTCTGCAGTACCGTCCGGCAGAAAACCCTGAAACATGTGTCGTCAATAAACTATGGAAATATGCTCGGAAACCCGTGACCGCGGCTGTGCTTTTGGGTGTGTTGTTGCTCATGTACAGACCCAAACCGGCGCTGGCTTCCTCTGTTGGGCGGGTCCGTGCAACCTGCTCGCCCTACGATTCCGCTGATACGGAGTCGCAGCTCCGGTACATTGACGCGCGAGAATATAGTATGTCGCGTACGAGTGTTGATACTATGGGGTGGGTGTTATATCCTTATGCGCTATACTATGGGGCACTTGCTGCGCTATTCGTAATGTGCCGATTGCTAAAATGTCTCGACCCTTCTGTGCTCGAATGGTTTGAGCGCCAAGTCAAATTCTTGTTCTTGATCGTTATTATTCATCATATGTGGGCAACACGCCATAATCCATCAACTGTTGTCAAGCTTCAGCTCCAGCGATTCCATACCCGCGCCCCATGTACCTCTGCAAATTTGAGACTTTTCCATTGTTTCTTCTCCATGTTAAAGAGTGGAGTAAATGAGAATCAACTTGATATAAAAGCAGAAAGCTCAACAAGCCAAAAATCAGCAAATGAAATCCAAGATGAATATATGGAGGTTATAATATTGGTGGCTGTTGTCGGGAAGCATGAGTTTCCCACCATCAATTCCTGGGATGACTTGAAGGAAGTATTGCAATTGCTTACATCCATAGATCCTAATGACGGTATATATGCATATGGAGTAGAAGTGTTGTGGAGTCCTCAATCCTCTTCCTCATGGGGCTGGAGAAGATGGTTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

337

Amino Acids

38.44

Weight (kDa)

9.41

Isoelectric Point (pI)

45.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 256 - 326 3.9e-11 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 827
Acc36I ACCTGC 2 cut(s) 30, 374
AccII CGCG 5 cut(s) 284, 419, 421, 439, 675
AciI CCGC 9 cut(s) 11, 76, 160, 194, 282, 284, 352, 384, 673
AclWI GGATC 1 cut(s) 914
AcoI YGGCCR 1 cut(s) 195
AcsI RAATTY 2 cut(s) 578, 694
AcuI CTGAAG 1 cut(s) 635
AfaI GTAC 5 cut(s) 212, 317, 410, 442, 685
AfiI CCNNNNNNNGG 2 cut(s) 348, 929
AflIII ACRYGT 1 cut(s) 236
AgsI TTSAA 5 cut(s) 46, 127, 143, 889, 1006
AjnI CCWGG 1 cut(s) 875
AjuI GAANNNNNNNTTGG 2 cut(s) 123, 155
AluBI AGCT 6 cut(s) 112, 139, 403, 649, 655, 774
AluI AGCT 6 cut(s) 112, 139, 403, 649, 655, 774
Alw21I GWGCWC 1 cut(s) 555
Alw26I GTCTC 2 cut(s) 542, 694
AlwI GGATC 1 cut(s) 914
AoxI GGCC 2 cut(s) 96, 195
ApeKI GCWGC 2 cut(s) 400, 503
ApoI RAATTY 2 cut(s) 578, 694
AspLEI GCGC 6 cut(s) 334, 421, 484, 508, 570, 677
AspS9I GGNCC 2 cut(s) 97, 355
AvaII GGWCC 1 cut(s) 355
BaeGI GKGCMC 1 cut(s) 499
BarI GAAGNNNNNNTAC 2 cut(s) 44, 76
Bbv12I GWGCWC 1 cut(s) 555
BbvI GCAGC 2 cut(s) 412, 490
BccI CCATC 3 cut(s) 640, 875, 993
BceAI ACGGC 1 cut(s) 24
BcgI CGANNNNNNTGC 2 cut(s) 351, 385
BciT130I CCWGG 1 cut(s) 877
BcoDI GTCTC 2 cut(s) 542, 694
BfmI CTRYAG 1 cut(s) 206
BfoI RGCGCY 2 cut(s) 335, 571
BfuAI ACCTGC 2 cut(s) 30, 374
BisI GCNGC 6 cut(s) 12, 160, 195, 285, 401, 504
BlsI GCNGC 6 cut(s) 13, 161, 196, 286, 402, 505
Bme1390I CCNGG 1 cut(s) 877
Bme18I GGWCC 1 cut(s) 355
BmgT120I GGNCC 2 cut(s) 97, 355
BmiI GGNNCC 2 cut(s) 74, 356
BmrFI CCNGG 1 cut(s) 877
BpmI CTGGAG 1 cut(s) 641
BsaJI CCNNGG 3 cut(s) 147, 282, 876
BsaWI WCCGGW 1 cut(s) 405
BsaXI ACNNNNNCTCC 2 cut(s) 939, 969
Bsc4I CCNNNNNNNGG 2 cut(s) 348, 929
Bse118I RCCGGY 1 cut(s) 328
Bse1I ACTGG 1 cut(s) 104
Bse3DI GCAATG 1 cut(s) 62
BseBI CCWGG 1 cut(s) 877
BseDI CCNNGG 3 cut(s) 147, 282, 876
BseGI GGATG 2 cut(s) 886, 911
BseLI CCNNNNNNNGG 2 cut(s) 348, 929
BseMI GCAATG 1 cut(s) 62
BseMII CTCAG 1 cut(s) 127
BseNI ACTGG 1 cut(s) 104
BseRI GAGGAG 1 cut(s) 17
BseSI GKGCMC 1 cut(s) 499
BseX3I CGGCCG 1 cut(s) 195
BseXI GCAGC 2 cut(s) 412, 490
Bsh1236I CGCG 5 cut(s) 284, 419, 421, 439, 675
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 2 cut(s) 98, 197
BsiEI CGRYCG 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 555
BsiSI CCGG 3 cut(s) 218, 329, 406
BsiWI CGTACG 1 cut(s) 440
BslI CCNNNNNNNGG 2 cut(s) 348, 929
BsmAI GTCTC 2 cut(s) 542, 694
BsnI GGCC 2 cut(s) 98, 197
Bsp1286I GDGCHC 2 cut(s) 499, 555
Bsp1407I TGTACA 1 cut(s) 315
Bsp143I GATC 3 cut(s) 165, 591, 919
BspACI CCGC 9 cut(s) 11, 76, 160, 194, 282, 284, 352, 384, 673
BspANI GGCC 2 cut(s) 98, 197
BspCNI CTCAG 1 cut(s) 126
BspFNI CGCG 5 cut(s) 284, 419, 421, 439, 675
BspLI GGNNCC 2 cut(s) 74, 356
BspMAI CTGCAG 1 cut(s) 210
BspMI ACCTGC 2 cut(s) 30, 374
BspPI GGATC 1 cut(s) 914
BspQI GCTCTTC 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 62
BsrFI RCCGGY 1 cut(s) 328
BsrGI TGTACA 1 cut(s) 315
BsrI ACTGG 1 cut(s) 104
BssAI RCCGGY 1 cut(s) 328
BssECI CCNNGG 3 cut(s) 147, 282, 876
BssMI GATC 3 cut(s) 165, 591, 919
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 877
Bst4CI ACNGT 3 cut(s) 215, 640, 932
Bst6I CTCTTC 2 cut(s) 149, 982
BstAPI GCANNNNNTGC 1 cut(s) 503
BstAUI TGTACA 1 cut(s) 315
BstC8I GCNNGC 2 cut(s) 336, 371
BstDEI CTNAG 1 cut(s) 113
BstDSI CCRYGG 1 cut(s) 282
BstF5I GGATG 2 cut(s) 886, 911
BstFNI CGCG 5 cut(s) 284, 419, 421, 439, 675
BstH2I RGCGCY 2 cut(s) 335, 571
BstHHI GCGC 6 cut(s) 334, 421, 484, 508, 570, 677
BstKTI GATC 3 cut(s) 168, 594, 922
BstMAI GTCTC 2 cut(s) 542, 694
BstMBI GATC 3 cut(s) 165, 591, 919
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 3 cut(s) 11, 503, 780
BstNI CCWGG 1 cut(s) 877
BstNSI RCATGY 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 875
BstSFI CTRYAG 1 cut(s) 206
BstSLI GKGCMC 1 cut(s) 499
BstUI CGCG 5 cut(s) 284, 419, 421, 439, 675
BstV1I GCAGC 2 cut(s) 412, 490
BstX2I RGATCY 1 cut(s) 919
BstXI CCANNNNNNTGG 1 cut(s) 48
BstYI RGATCY 1 cut(s) 919
BstZI CGGCCG 1 cut(s) 195
BsuRI GGCC 2 cut(s) 98, 197
BtgI CCRYGG 1 cut(s) 282
BtsCI GGATG 2 cut(s) 886, 911
BtsIMutI CAGTG 1 cut(s) 121
BveI ACCTGC 2 cut(s) 30, 374
Cac8I GCNNGC 2 cut(s) 336, 371
CfoI GCGC 6 cut(s) 334, 421, 484, 508, 570, 677
Cfr10I RCCGGY 1 cut(s) 328
Cfr13I GGNCC 2 cut(s) 97, 355
Cfr42I CCGCGG 1 cut(s) 285
CseI GACGC 1 cut(s) 425
Csp6I GTAC 5 cut(s) 211, 316, 409, 441, 684
CviAII CATG 6 cut(s) 237, 313, 681, 724, 854, 984
CviQI GTAC 5 cut(s) 211, 316, 409, 441, 684
DdeI CTNAG 1 cut(s) 113
DpnI GATC 3 cut(s) 167, 593, 921
DpnII GATC 3 cut(s) 165, 591, 919
EaeI YGGCCR 1 cut(s) 195
EagI CGGCCG 1 cut(s) 195
Eam1104I CTCTTC 2 cut(s) 149, 982
EarI CTCTTC 2 cut(s) 149, 982
EciI GGCGGA 1 cut(s) 65
EclXI CGGCCG 1 cut(s) 195
Eco130I CCWWGG 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 355
Eco52I CGGCCG 1 cut(s) 195
Eco57I CTGAAG 1 cut(s) 635
EcoRII CCWGG 1 cut(s) 875
EcoT14I CCWWGG 1 cut(s) 147
EcoT22I ATGCAT 1 cut(s) 943
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 6 cut(s) 240, 316, 684, 727, 857, 987
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FatI CATG 6 cut(s) 236, 312, 680, 723, 853, 983
FauI CCCGC 2 cut(s) 345, 680
FauNDI CATATG 2 cut(s) 609, 943
Fnu4HI GCNGC 6 cut(s) 12, 160, 195, 285, 401, 504
FokI GGATG 2 cut(s) 893, 898
Fsp4HI GCNGC 6 cut(s) 12, 160, 195, 285, 401, 504
GlaI GCGC 6 cut(s) 333, 420, 483, 507, 569, 676
GluI GCNGC 6 cut(s) 12, 160, 195, 285, 401, 504
GsuI CTGGAG 1 cut(s) 641
HaeII RGCGCY 2 cut(s) 335, 571
HaeIII GGCC 2 cut(s) 98, 197
HapII CCGG 3 cut(s) 218, 329, 406
HgaI GACGC 1 cut(s) 425
HhaI GCGC 6 cut(s) 334, 421, 484, 508, 570, 677
Hin1II CATG 6 cut(s) 240, 316, 684, 727, 857, 987
Hin6I GCGC 6 cut(s) 332, 419, 482, 506, 568, 675
HinP1I GCGC 6 cut(s) 332, 419, 482, 506, 568, 675
HindIII AAGCTT 2 cut(s) 137, 647
HinfI GANTC 6 cut(s) 200, 380, 395, 663, 748, 964
HpaII CCGG 3 cut(s) 218, 329, 406
Hpy188I TCNGA 1 cut(s) 270
Hpy188III TCNNGA 3 cut(s) 539, 589, 847
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 4 cut(s) 92, 133, 555, 883
HpyCH4III ACNGT 3 cut(s) 215, 640, 932
HpyCH4V TGCA 6 cut(s) 119, 208, 362, 692, 901, 941
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 503, 780
HpyF3I CTNAG 1 cut(s) 113
Hsp92II CATG 6 cut(s) 240, 316, 684, 727, 857, 987
HspAI GCGC 6 cut(s) 332, 419, 482, 506, 568, 675
KspI CCGCGG 1 cut(s) 285
Kzo9I GATC 3 cut(s) 165, 591, 919
LguI GCTCTTC 1 cut(s) 149
LmnI GCTCC 3 cut(s) 30, 408, 660
Lsp1109I GCAGC 2 cut(s) 412, 490
MaeIII GTNAC 1 cut(s) 277
MalI GATC 3 cut(s) 167, 593, 921
MboI GATC 3 cut(s) 165, 591, 919
MboII GAAGA 4 cut(s) 166, 709, 969, 1008
MfeI CAATTG 1 cut(s) 902
MflI RGATCY 1 cut(s) 919
MhlI GDGCHC 2 cut(s) 499, 555
MluCI AATT 5 cut(s) 132, 578, 694, 871, 902
MlyI GAGTC 2 cut(s) 404, 973
MnlI CCTC 9 cut(s) 38, 89, 99, 352, 697, 814, 978, 985, 991
Mph1103I ATGCAT 1 cut(s) 943
MseI TTAA 2 cut(s) 135, 728
MslI CAYNNNNRTG 1 cut(s) 46
MspA1I CMGCKG 3 cut(s) 194, 284, 386
MspI CCGG 3 cut(s) 218, 329, 406
MspR9I CCNGG 1 cut(s) 877
MunI CAATTG 1 cut(s) 902
MvaI CCWGG 1 cut(s) 877
MvnI CGCG 5 cut(s) 284, 419, 421, 439, 675
MwoI GCNNNNNNNGC 3 cut(s) 11, 503, 780
NdeI CATATG 2 cut(s) 609, 943
NdeII GATC 3 cut(s) 165, 591, 919
NlaIII CATG 6 cut(s) 240, 316, 684, 727, 857, 987
NlaIV GGNNCC 2 cut(s) 74, 356
NmeAIII GCCGAG 1 cut(s) 74
NmuCI GTSAC 1 cut(s) 277
NsiI ATGCAT 1 cut(s) 943
NspI RCATGY 1 cut(s) 240
PciI ACATGT 1 cut(s) 236
PciSI GCTCTTC 1 cut(s) 149
PfeI GAWTC 4 cut(s) 200, 380, 663, 748
Pfl23II CGTACG 1 cut(s) 440
PkrI GCNGC 6 cut(s) 13, 161, 196, 286, 402, 505
PleI GAGTC 2 cut(s) 403, 972
PpsI GAGTC 2 cut(s) 403, 972
PscI ACATGT 1 cut(s) 236
PsiI TTATAA 1 cut(s) 827
Psp6I CCWGG 1 cut(s) 875
PspGI CCWGG 1 cut(s) 875
PspLI CGTACG 1 cut(s) 440
PspN4I GGNNCC 2 cut(s) 74, 356
PspPI GGNCC 2 cut(s) 97, 355
PstI CTGCAG 1 cut(s) 210
PsuI RGATCY 1 cut(s) 919
RsaI GTAC 5 cut(s) 212, 317, 410, 442, 685
RsaNI GTAC 5 cut(s) 211, 316, 409, 441, 684
RseI CAYNNNNRTG 1 cut(s) 46
SacII CCGCGG 1 cut(s) 285
SapI GCTCTTC 1 cut(s) 149
SaqAI TTAA 2 cut(s) 135, 728
SatI GCNGC 6 cut(s) 12, 160, 195, 285, 401, 504
Sau3AI GATC 3 cut(s) 165, 591, 919
Sau96I GGNCC 2 cut(s) 97, 355
SchI GAGTC 2 cut(s) 404, 973
ScrFI CCNGG 1 cut(s) 877
SduI GDGCHC 2 cut(s) 499, 555
SfcI CTRYAG 1 cut(s) 206
Sfr303I CCGCGG 1 cut(s) 285
SgrBI CCGCGG 1 cut(s) 285
SinI GGWCC 1 cut(s) 355
SmiMI CAYNNNNRTG 1 cut(s) 46
Sse9I AATT 5 cut(s) 132, 578, 694, 871, 902
SsiI CCGC 9 cut(s) 11, 76, 160, 194, 282, 284, 352, 384, 673
SspI AATATT 1 cut(s) 831
StyD4I CCNGG 1 cut(s) 875
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 3 cut(s) 215, 640, 932
TaqI TCGA 2 cut(s) 540, 555
TasI AATT 5 cut(s) 132, 578, 694, 871, 902
TatI WGTACW 1 cut(s) 315
TauI GCSGC 4 cut(s) 14, 162, 197, 287
TfiI GAWTC 4 cut(s) 200, 380, 663, 748
Tru1I TTAA 2 cut(s) 135, 728
Tru9I TTAA 2 cut(s) 135, 728
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 2 cut(s) 400, 503
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 3 cut(s) 593, 813, 825
TspGWI ACGGA 2 cut(s) 347, 407
TspRI CASTG 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 355
XapI RAATTY 2 cut(s) 578, 694
XceI RCATGY 1 cut(s) 240
XcmI CCANNNNNNNNNTGG 1 cut(s) 331
Zsp2I ATGCAT 1 cut(s) 943
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.