Rroxscaffold_2G00105730

Protein of unknown function (DUF1517)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
29158331 .. 29164571
6241 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00105730.1

Sequence Viewer

Length: 1581 bp
ATGGCAACGGCGGCTACTAATCTGCTCTTCCAAACAAACCCATTGAAGTGGAAGCAATGCTGCCCAAATCGGTTCCGCCTCCTTCGTCCTCTCTCGGCCCAACCAGTCAAGCTCAGTGCAACCTTCAACCAAATTAAGCTTCAATCCTTGGAGAAGAGCCCCTTAATCGCAACCCTAAACCCGAAATCAAAATCAGCGGCCGAATCTCTGCAGTACCGTCCTGCAGAAAACCCTGAAACATGTGTCGTCAATAAACTATGGAAATATGCTCGGACACCCGTGACCGCGGCTGTGCTTTTGGGTGTGTCGTTGCTCATGTACAGACCCAAACCGGCACTGGCTTCCTCTGTTGGGCGGGTCCGTGCAACCTGCTCGCCCTACGATTCCGAAGCTGATACGGAGTCGCAGGTCCGGTACATTGACGCGCGAGACTATAGTATGTCGCGTACGAGTGTGGATACTATGGGGTGGGTGTTATATCCTTATGCGCTATACTATGGGGCACTTGCTGCGCTATTCGTAATGTGCCGATTGCTAAAATGTCTCGACCCTTCTGTGCTCGAATGGTTTAAGCGCCAAGTCAAATTCTTGTTCTTGATCGTTATTATTCATCGTATGTGGGCAACACGCCATAATCCATCAACTGTTGTCAAGCTTCAGCTCCAGGTTAATTTATCGAATGCTGGACGAGCACTCCAAATGGATCTTAATCGGATTGCTGAAACTGCAAATACTTCTACCTATACGGGTGTAAACAGTATTTTGACTGAGACAGCAGGAACTTTTCTCAGGCATCCTGATTGTTTCATCTCAGCCAGTTCATATGTGGCTGGGAAATATGGTAGGGATGGTGCACAAAAGTACTTGGACCAACTATCTCTTGAAGAGAGGATTAAATTAAGCGAAAAACCACTTGTCAATGTGAAGAATTTAAAAGCAGAAAGCTCAACAAGCCAAAAATCAGCAAATGAAATCCAAGATGAATATATGGAGGTAAATGAGAATCAACTTGATATAAAAGCAGAAAGCTCAACAAGCCAAAAATCAGCAAATGAAATCCAAGATGAATATATGGAGGTAAATGACAATCAACTTGATATAAATGCGGAAAGCTCAACAAGCCAAAAATCAGCAAATGATATCCAAGATGGATATATGAAGGTTATAATATTGGTGGCTGTTGTCGGGAAGCATGAGTTTCCCACCATCAATTCCTGGGATGACTTGAAGGAAGTATTGCAAATGCTTACATCCATAGATCCTGATGACGGGAGTAGAAGTGTTGTGGAGTCCTCAATCCTCTTCCTCATGGGGCTGGAGAAGATGGTTCAAATGAGAAAAACATTCTTTAATTTCGCAAAAAAGTTGTTGCTCAGCAAGTTTGTTTACAGAACAATATTTTCTAGGAAGTTATTCAGAAATGCGAACCATCAGACCATTCAAGGCCGCCCGCGGCATTGGGATATGCTTATGATGTCTGCCGGTGGTATAATAAATACTGCTTCATGCATTGGTTTGCAGATGATTGAAGCCAAGTTAAAGATGAAAATATCAGATTACATTGTGTATGTTCTGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

526

Amino Acids

59.39

Weight (kDa)

9.11

Isoelectric Point (pI)

38.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 219 - 329 1.6e-19 Protein of unknown function (DUF1517)
DUF1517 PF07466 346 - 423 8.8e-07 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1166
Acc36I ACCTGC 2 cut(s) 377, 397
AccII CGCG 5 cut(s) 287, 425, 427, 445, 1453
AclWI GGATC 2 cut(s) 711, 1253
AcoI YGGCCR 1 cut(s) 198
AcsI RAATTY 2 cut(s) 584, 928
AcuI CTGAAG 1 cut(s) 641
AfaI GTAC 5 cut(s) 215, 320, 416, 448, 863
AfiI CCNNNNNNNGG 2 cut(s) 351, 1268
AflIII ACRYGT 1 cut(s) 239
AgsI TTSAA 8 cut(s) 46, 127, 143, 884, 1228, 1331, 1442, 1529
AjnI CCWGG 2 cut(s) 663, 1214
AjuI GAANNNNNNNTTGG 2 cut(s) 123, 155
AluBI AGCT 8 cut(s) 112, 139, 392, 655, 661, 945, 1029, 1113
AluI AGCT 8 cut(s) 112, 139, 392, 655, 661, 945, 1029, 1113
Alw21I GWGCWC 3 cut(s) 561, 694, 856
Alw26I GTCTC 3 cut(s) 423, 548, 764
Alw44I GTGCAC 1 cut(s) 852
AlwI GGATC 2 cut(s) 711, 1253
AoxI GGCC 3 cut(s) 96, 198, 1444
ApaLI GTGCAC 1 cut(s) 852
ApeKI GCWGC 2 cut(s) 60, 509
ApoI RAATTY 2 cut(s) 584, 928
Asp700I GAANNNNTTC 1 cut(s) 1412
AspLEI GCGC 4 cut(s) 427, 490, 514, 576
AspS9I GGNCC 4 cut(s) 97, 358, 409, 868
AvaII GGWCC 3 cut(s) 358, 409, 868
BaeGI GKGCMC 2 cut(s) 505, 856
BanII GRGCYC 1 cut(s) 161
Bbv12I GWGCWC 3 cut(s) 561, 694, 856
BbvI GCAGC 2 cut(s) 47, 496
BccI CCATC 6 cut(s) 646, 842, 1142, 1214, 1318, 1437
BceAI ACGGC 1 cut(s) 24
BcgI CGANNNNNNTGC 2 cut(s) 354, 388
BciT130I CCWGG 2 cut(s) 665, 1216
BciVI GTATCC 1 cut(s) 451
BcoDI GTCTC 3 cut(s) 423, 548, 764
BfaI CTAG 1 cut(s) 1404
BfmI CTRYAG 3 cut(s) 209, 222, 433
BfoI RGCGCY 1 cut(s) 577
BfuAI ACCTGC 2 cut(s) 377, 397
BfuI GTATCC 1 cut(s) 451
BisI GCNGC 7 cut(s) 12, 61, 198, 288, 510, 1447, 1454
BlpI GCTNAGC 1 cut(s) 1373
BlsI GCNGC 7 cut(s) 13, 62, 199, 289, 511, 1448, 1455
BmcAI AGTACT 1 cut(s) 863
Bme1390I CCNGG 2 cut(s) 665, 1216
Bme18I GGWCC 3 cut(s) 358, 409, 868
BmgT120I GGNCC 4 cut(s) 97, 358, 409, 868
BmiI GGNNCC 2 cut(s) 74, 359
BmrFI CCNGG 2 cut(s) 665, 1216
BmsI GCATC 1 cut(s) 802
BpmI CTGGAG 2 cut(s) 647, 1337
Bpu1102I GCTNAGC 1 cut(s) 1373
BsaBI GATNNNNATC 1 cut(s) 708
BsaJI CCNNGG 4 cut(s) 147, 285, 1215, 1451
BsaWI WCCGGW 1 cut(s) 411
BsaXI ACNNNNNCTCC 4 cut(s) 678, 708, 1264, 1294
Bsc4I CCNNNNNNNGG 2 cut(s) 351, 1268
Bse118I RCCGGY 2 cut(s) 331, 1481
Bse1I ACTGG 3 cut(s) 104, 342, 816
Bse3DI GCAATG 1 cut(s) 62
Bse8I GATNNNNATC 1 cut(s) 708
BseBI CCWGG 2 cut(s) 665, 1216
BseDI CCNNGG 4 cut(s) 147, 285, 1215, 1451
BseGI GGATG 4 cut(s) 793, 853, 1225, 1250
BseJI GATNNNNATC 1 cut(s) 708
BseLI CCNNNNNNNGG 2 cut(s) 351, 1268
BseMI GCAATG 1 cut(s) 62
BseMII CTCAG 5 cut(s) 127, 759, 802, 825, 1387
BseNI ACTGG 3 cut(s) 104, 342, 816
BseSI GKGCMC 2 cut(s) 505, 856
BseX3I CGGCCG 1 cut(s) 198
BseXI GCAGC 2 cut(s) 47, 496
BseYI CCCAGC 1 cut(s) 830
Bsh1236I CGCG 5 cut(s) 287, 425, 427, 445, 1453
Bsh1285I CGRYCG 1 cut(s) 201
BshFI GGCC 3 cut(s) 98, 200, 1446
BsiEI CGRYCG 1 cut(s) 201
BsiHKAI GWGCWC 3 cut(s) 561, 694, 856
BsiSI CCGG 3 cut(s) 332, 412, 1482
BsiWI CGTACG 1 cut(s) 446
BslI CCNNNNNNNGG 2 cut(s) 351, 1268
BsmAI GTCTC 3 cut(s) 423, 548, 764
BsmI GAATGC 1 cut(s) 685
BsnI GGCC 3 cut(s) 98, 200, 1446
Bsp1286I GDGCHC 5 cut(s) 161, 505, 561, 694, 856
Bsp1407I TGTACA 1 cut(s) 318
Bsp143I GATC 3 cut(s) 597, 703, 1258
Bsp1720I GCTNAGC 1 cut(s) 1373
BspANI GGCC 3 cut(s) 98, 200, 1446
BspCNI CTCAG 5 cut(s) 126, 760, 801, 824, 1386
BspFNI CGCG 5 cut(s) 287, 425, 427, 445, 1453
BspLI GGNNCC 2 cut(s) 74, 359
BspMAI CTGCAG 2 cut(s) 213, 226
BspMI ACCTGC 2 cut(s) 377, 397
BspPI GGATC 2 cut(s) 711, 1253
BspQI GCTCTTC 2 cut(s) 32, 149
BsrDI GCAATG 1 cut(s) 62
BsrFI RCCGGY 2 cut(s) 331, 1481
BsrGI TGTACA 1 cut(s) 318
BsrI ACTGG 3 cut(s) 104, 342, 816
BssAI RCCGGY 2 cut(s) 331, 1481
BssECI CCNNGG 4 cut(s) 147, 285, 1215, 1451
BssMI GATC 3 cut(s) 597, 703, 1258
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 2 cut(s) 665, 1216
Bst4CI ACNGT 3 cut(s) 218, 646, 758
Bst6I CTCTTC 4 cut(s) 32, 149, 879, 1307
BstAPI GCANNNNNTGC 1 cut(s) 509
BstAUI TGTACA 1 cut(s) 318
BstC8I GCNNGC 2 cut(s) 374, 1451
BstDEI CTNAG 5 cut(s) 113, 768, 788, 811, 1373
BstDSI CCRYGG 2 cut(s) 285, 1451
BstF5I GGATG 4 cut(s) 793, 853, 1225, 1250
BstFNI CGCG 5 cut(s) 287, 425, 427, 445, 1453
BstH2I RGCGCY 1 cut(s) 577
BstHHI GCGC 4 cut(s) 427, 490, 514, 576
BstKTI GATC 3 cut(s) 600, 706, 1261
BstMAI GTCTC 3 cut(s) 423, 548, 764
BstMBI GATC 3 cut(s) 597, 703, 1258
BstMCI CGRYCG 1 cut(s) 201
BstMWI GCNNNNNNNGC 7 cut(s) 11, 509, 689, 725, 951, 1035, 1119
BstNI CCWGG 2 cut(s) 665, 1216
BstNSI RCATGY 1 cut(s) 243
BstSCI CCNGG 2 cut(s) 663, 1214
BstSFI CTRYAG 3 cut(s) 209, 222, 433
BstSLI GKGCMC 2 cut(s) 505, 856
BstUI CGCG 5 cut(s) 287, 425, 427, 445, 1453
BstV1I GCAGC 2 cut(s) 47, 496
BstX2I RGATCY 2 cut(s) 703, 1258
BstXI CCANNNNNNTGG 1 cut(s) 48
BstYI RGATCY 2 cut(s) 703, 1258
BstZI CGGCCG 1 cut(s) 198
BsuI GTATCC 1 cut(s) 451
BsuRI GGCC 3 cut(s) 98, 200, 1446
BtgI CCRYGG 2 cut(s) 285, 1451
BtsCI GGATG 4 cut(s) 793, 853, 1225, 1250
BtsIMutI CAGTG 2 cut(s) 121, 335
BveI ACCTGC 2 cut(s) 377, 397
Cac8I GCNNGC 2 cut(s) 374, 1451
CfoI GCGC 4 cut(s) 427, 490, 514, 576
Cfr10I RCCGGY 2 cut(s) 331, 1481
Cfr13I GGNCC 4 cut(s) 97, 358, 409, 868
Cfr42I CCGCGG 2 cut(s) 288, 1454
CseI GACGC 1 cut(s) 431
Csp6I GTAC 5 cut(s) 214, 319, 415, 447, 862
CviAII CATG 5 cut(s) 240, 316, 1193, 1309, 1506
CviQI GTAC 5 cut(s) 214, 319, 415, 447, 862
DdeI CTNAG 5 cut(s) 113, 768, 788, 811, 1373
DpnI GATC 3 cut(s) 599, 705, 1260
DpnII GATC 3 cut(s) 597, 703, 1258
DraI TTTAAA 1 cut(s) 933
EaeI YGGCCR 1 cut(s) 198
EagI CGGCCG 1 cut(s) 198
Eam1104I CTCTTC 4 cut(s) 32, 149, 879, 1307
EarI CTCTTC 4 cut(s) 32, 149, 879, 1307
EciI GGCGGA 1 cut(s) 65
EclXI CGGCCG 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 161
Eco32I GATATC 1 cut(s) 1141
Eco47I GGWCC 3 cut(s) 358, 409, 868
Eco52I CGGCCG 1 cut(s) 198
Eco57I CTGAAG 1 cut(s) 641
EcoRII CCWGG 2 cut(s) 663, 1214
EcoRV GATATC 1 cut(s) 1141
EcoT14I CCWWGG 1 cut(s) 147
EcoT22I ATGCAT 1 cut(s) 1511
EcoT38I GRGCYC 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 5 cut(s) 243, 319, 1196, 1312, 1509
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FatI CATG 5 cut(s) 239, 315, 1192, 1308, 1505
FauI CCCGC 2 cut(s) 348, 1458
FauNDI CATATG 1 cut(s) 823
Fnu4HI GCNGC 7 cut(s) 12, 61, 198, 288, 510, 1447, 1454
FokI GGATG 4 cut(s) 780, 860, 1232, 1237
FriOI GRGCYC 1 cut(s) 161
Fsp4HI GCNGC 7 cut(s) 12, 61, 198, 288, 510, 1447, 1454
FspBI CTAG 1 cut(s) 1404
GlaI GCGC 4 cut(s) 426, 489, 513, 575
GluI GCNGC 7 cut(s) 12, 61, 198, 288, 510, 1447, 1454
GsaI CCCAGC 1 cut(s) 834
GsuI CTGGAG 2 cut(s) 647, 1337
HaeII RGCGCY 1 cut(s) 577
HaeIII GGCC 3 cut(s) 98, 200, 1446
HapII CCGG 3 cut(s) 332, 412, 1482
HgaI GACGC 1 cut(s) 431
HhaI GCGC 4 cut(s) 427, 490, 514, 576
Hin1II CATG 5 cut(s) 243, 319, 1196, 1312, 1509
Hin6I GCGC 4 cut(s) 425, 488, 512, 574
HinP1I GCGC 4 cut(s) 425, 488, 512, 574
HindIII AAGCTT 2 cut(s) 137, 653
HinfI GANTC 5 cut(s) 203, 383, 401, 1003, 1289
HpaII CCGG 3 cut(s) 332, 412, 1482
Hpy166II GTNNAC 3 cut(s) 754, 854, 1387
Hpy188I TCNGA 6 cut(s) 273, 388, 714, 1418, 1434, 1555
Hpy188III TCNNGA 6 cut(s) 545, 595, 797, 881, 1186, 1262
Hpy8I GTNNAC 3 cut(s) 754, 854, 1387
HpyAV CCTTC 5 cut(s) 92, 133, 561, 1153, 1222
HpyCH4III ACNGT 3 cut(s) 218, 646, 758
HpyCH4V TGCA 9 cut(s) 119, 211, 224, 365, 728, 854, 1240, 1509, 1519
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 509, 689, 725, 951, 1035, 1119
HpyF3I CTNAG 5 cut(s) 113, 768, 788, 811, 1373
Hsp92II CATG 5 cut(s) 243, 319, 1196, 1312, 1509
HspAI GCGC 4 cut(s) 425, 488, 512, 574
KspI CCGCGG 2 cut(s) 288, 1454
Kzo9I GATC 3 cut(s) 597, 703, 1258
LguI GCTCTTC 2 cut(s) 32, 149
LmnI GCTCC 1 cut(s) 666
Lsp1109I GCAGC 2 cut(s) 47, 496
LweI GCATC 1 cut(s) 802
MaeI CTAG 1 cut(s) 1404
MaeIII GTNAC 1 cut(s) 280
MalI GATC 3 cut(s) 599, 705, 1260
MboI GATC 3 cut(s) 597, 703, 1258
MboII GAAGA 6 cut(s) 19, 166, 896, 937, 1294, 1333
MflI RGATCY 2 cut(s) 703, 1258
MhlI GDGCHC 5 cut(s) 161, 505, 561, 694, 856
MluCI AATT 7 cut(s) 132, 584, 670, 896, 928, 1210, 1351
MlyI GAGTC 2 cut(s) 410, 1298
MnlI CCTC 9 cut(s) 89, 99, 355, 882, 985, 1069, 1303, 1310, 1316
Mph1103I ATGCAT 1 cut(s) 1511
MroXI GAANNNNTTC 1 cut(s) 1412
MslI CAYNNNNRTG 1 cut(s) 46
MspA1I CMGCKG 3 cut(s) 197, 287, 1453
MspI CCGG 3 cut(s) 332, 412, 1482
MspR9I CCNGG 2 cut(s) 665, 1216
Mva1269I GAATGC 1 cut(s) 685
MvaI CCWGG 2 cut(s) 665, 1216
MvnI CGCG 5 cut(s) 287, 425, 427, 445, 1453
MwoI GCNNNNNNNGC 7 cut(s) 11, 509, 689, 725, 951, 1035, 1119
NdeI CATATG 1 cut(s) 823
NdeII GATC 3 cut(s) 597, 703, 1258
NlaIII CATG 5 cut(s) 243, 319, 1196, 1312, 1509
NlaIV GGNNCC 2 cut(s) 74, 359
NmeAIII GCCGAG 1 cut(s) 74
NmuCI GTSAC 1 cut(s) 280
NsiI ATGCAT 1 cut(s) 1511
NspI RCATGY 1 cut(s) 243
PciI ACATGT 1 cut(s) 239
PciSI GCTCTTC 2 cut(s) 32, 149
PctI GAATGC 1 cut(s) 685
PdmI GAANNNNTTC 1 cut(s) 1412
PfeI GAWTC 3 cut(s) 203, 383, 1003
Pfl23II CGTACG 1 cut(s) 446
PkrI GCNGC 7 cut(s) 13, 62, 199, 289, 511, 1448, 1455
PleI GAGTC 2 cut(s) 409, 1297
PpsI GAGTC 2 cut(s) 409, 1297
PscI ACATGT 1 cut(s) 239
PsiI TTATAA 1 cut(s) 1166
Psp6I CCWGG 2 cut(s) 663, 1214
PspFI CCCAGC 1 cut(s) 830
PspGI CCWGG 2 cut(s) 663, 1214
PspLI CGTACG 1 cut(s) 446
PspN4I GGNNCC 2 cut(s) 74, 359
PspPI GGNCC 4 cut(s) 97, 358, 409, 868
PstI CTGCAG 2 cut(s) 213, 226
PsuI RGATCY 2 cut(s) 703, 1258
RsaI GTAC 5 cut(s) 215, 320, 416, 448, 863
RsaNI GTAC 5 cut(s) 214, 319, 415, 447, 862
RseI CAYNNNNRTG 1 cut(s) 46
SacII CCGCGG 2 cut(s) 288, 1454
SapI GCTCTTC 2 cut(s) 32, 149
SatI GCNGC 7 cut(s) 12, 61, 198, 288, 510, 1447, 1454
Sau3AI GATC 3 cut(s) 597, 703, 1258
Sau96I GGNCC 4 cut(s) 97, 358, 409, 868
ScaI AGTACT 1 cut(s) 863
SchI GAGTC 2 cut(s) 410, 1298
ScrFI CCNGG 2 cut(s) 665, 1216
SduI GDGCHC 5 cut(s) 161, 505, 561, 694, 856
SfaNI GCATC 1 cut(s) 802
SfcI CTRYAG 3 cut(s) 209, 222, 433
Sfr303I CCGCGG 2 cut(s) 288, 1454
SgrBI CCGCGG 2 cut(s) 288, 1454
SinI GGWCC 3 cut(s) 358, 409, 868
SmiMI CAYNNNNRTG 1 cut(s) 46
Sse9I AATT 7 cut(s) 132, 584, 670, 896, 928, 1210, 1351
SspI AATATT 2 cut(s) 1170, 1398
SspMI CTAG 1 cut(s) 1404
StyD4I CCNGG 2 cut(s) 663, 1214
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 3 cut(s) 218, 646, 758
TaqI TCGA 3 cut(s) 546, 561, 677
TasI AATT 7 cut(s) 132, 584, 670, 896, 928, 1210, 1351
TatI WGTACW 2 cut(s) 318, 861
TauI GCSGC 5 cut(s) 14, 200, 290, 1449, 1456
TfiI GAWTC 3 cut(s) 203, 383, 1003
TscAI CASTG 2 cut(s) 121, 342
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 2 cut(s) 60, 509
Tsp45I GTSAC 1 cut(s) 280
TspGWI ACGGA 2 cut(s) 350, 413
TspRI CASTG 2 cut(s) 121, 342
VneI GTGCAC 1 cut(s) 852
VpaK11BI GGWCC 3 cut(s) 358, 409, 868
XapI RAATTY 2 cut(s) 584, 928
XceI RCATGY 1 cut(s) 243
XcmI CCANNNNNNNNNTGG 2 cut(s) 334, 823
XmnI GAANNNNTTC 1 cut(s) 1412
XspI CTAG 1 cut(s) 1404
ZrmI AGTACT 1 cut(s) 863
Zsp2I ATGCAT 1 cut(s) 1511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.