Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0014649

Physical Location & Seq

Genomic Coordinates Forward (+)

59431116 .. 59431670

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG397800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCAACGGCGGCTACTAATCTGCTCCTCCAAACAAACCCATTGAGGTGGAAGCAATGCTACCCAAATCTGTTCCGCCCCCTTCGTCCTCTCTCGGCCCAACCAGTCAAGCTTAGTGCAACCTTCAACCAAATTAAGCTTCAATCCTTGGAGAAGAGCCGCTTAATCGCAACCAACCCGAGATCAAAATCAGCGGCCGAATCTCTGCAGTACCGTCCAGCAGAAAACCCTGTCGTCAATAAACTATGGAAACCCGTGACCACCGCGGCTGTGCTTTTGGGTGTGTTGTTGCTCATGTACAGACCCAAACCGGCACTGGCTTCCTCTGTTGGGCGGGTCCGTGCAACCTGCTCGCCCTACGATTCCGAAGCTGATACGGAGTCGCAGCTCCGGTACATTGACGCGCGAGACTATAGTATGTCGCGTACGAGTGTGGATACTATGGGGTGGGTGTTATATCCTTATGCGCTATACTATATATGGGGCACTTGCTGCGCTATTCTTAATGTGCCGATTGCTAAAATGTCTCGACCCTTTTGTGCTCGAATGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1517

Protein Analysis

184

Amino Acids

20.69

Weight (kDa)

9.82

Isoelectric Point (pI)

57.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014649)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00810 FvH4_2g00810 FvH4_2g00810 FvH4_2g00810 FvH4_2g02770 FvH4_5g04910
rosa_laevigata	RLG00000019784
rosa_multiflora	Rmu_sc0006014.1_g000012
rosa_roxburghii	Rroxscaffold_1G00047270 Rroxscaffold_2G00105730
rosa_samantha	Rh2AG397800 Rh2AG397900 Rh2AG404400 Rh2CG384700 Rh2CG390300 Rh2DG424100
rosa_wichuraiana	Rw2G033030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	356
AccII	CGCG	4 cut(s)	266, 404, 406, 424
AciI	CCGC	7 cut(s)	11, 76, 160, 194, 264, 266, 334
AcoI	YGGCCR	1 cut(s)	195
AfaI	GTAC	4 cut(s)	212, 299, 395, 427
AfiI	CCNNNNNNNGG	1 cut(s)	330
AgsI	TTSAA	2 cut(s)	127, 143
AjuI	GAANNNNNNNTTGG	2 cut(s)	123, 155
AluBI	AGCT	4 cut(s)	112, 139, 371, 388
AluI	AGCT	4 cut(s)	112, 139, 371, 388
Alw21I	GWGCWC	1 cut(s)	544
Alw26I	GTCTC	2 cut(s)	402, 531
Ama87I	CYCGRG	1 cut(s)	178
AoxI	GGCC	2 cut(s)	96, 195
ApeKI	GCWGC	2 cut(s)	385, 492
AspLEI	GCGC	3 cut(s)	406, 469, 497
AspS9I	GGNCC	2 cut(s)	97, 337
AvaI	CYCGRG	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	337
BaeGI	GKGCMC	1 cut(s)	488
BarI	GAAGNNNNNNTAC	2 cut(s)	44, 76
Bbv12I	GWGCWC	1 cut(s)	544
BbvI	GCAGC	2 cut(s)	397, 479
BceAI	ACGGC	1 cut(s)	24
BcgI	CGANNNNNNTGC	2 cut(s)	333, 367
BciVI	GTATCC	1 cut(s)	430
BcoDI	GTCTC	2 cut(s)	402, 531
BfmI	CTRYAG	2 cut(s)	206, 412
BfuAI	ACCTGC	1 cut(s)	356
BfuI	GTATCC	1 cut(s)	430
BisI	GCNGC	6 cut(s)	12, 160, 195, 267, 386, 493
BlsI	GCNGC	6 cut(s)	13, 161, 196, 268, 387, 494
Bme18I	GGWCC	1 cut(s)	337
BmeT110I	CYCGRG	1 cut(s)	178
BmgT120I	GGNCC	2 cut(s)	97, 337
BmiI	GGNNCC	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	187
BsaJI	CCNNGG	2 cut(s)	147, 264
BsaWI	WCCGGW	1 cut(s)	390
Bsc4I	CCNNNNNNNGG	1 cut(s)	330
Bse118I	RCCGGY	1 cut(s)	310
Bse1I	ACTGG	2 cut(s)	104, 321
Bse3DI	GCAATG	1 cut(s)	62
Bse8I	GATNNNNATC	1 cut(s)	187
BseDI	CCNNGG	2 cut(s)	147, 264
BseJI	GATNNNNATC	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	330
BseMI	GCAATG	1 cut(s)	62
BseNI	ACTGG	2 cut(s)	104, 321
BseRI	GAGGAG	1 cut(s)	17
BseSI	GKGCMC	1 cut(s)	488
BseX3I	CGGCCG	1 cut(s)	195
BseXI	GCAGC	2 cut(s)	397, 479
Bsh1236I	CGCG	4 cut(s)	266, 404, 406, 424
Bsh1285I	CGRYCG	1 cut(s)	198
BshFI	GGCC	2 cut(s)	98, 197
BsiEI	CGRYCG	1 cut(s)	198
BsiHKAI	GWGCWC	1 cut(s)	544
BsiHKCI	CYCGRG	1 cut(s)	178
BsiSI	CCGG	2 cut(s)	311, 391
BsiWI	CGTACG	1 cut(s)	425
BslI	CCNNNNNNNGG	1 cut(s)	330
BsmAI	GTCTC	2 cut(s)	402, 531
BsnI	GGCC	2 cut(s)	98, 197
BsoBI	CYCGRG	1 cut(s)	178
Bsp1286I	GDGCHC	2 cut(s)	488, 544
Bsp1407I	TGTACA	1 cut(s)	297
Bsp143I	GATC	1 cut(s)	182
BspACI	CCGC	7 cut(s)	11, 76, 160, 194, 264, 266, 334
BspANI	GGCC	2 cut(s)	98, 197
BspFNI	CGCG	4 cut(s)	266, 404, 406, 424
BspLI	GGNNCC	1 cut(s)	338
BspMAI	CTGCAG	1 cut(s)	210
BspMI	ACCTGC	1 cut(s)	356
BspQI	GCTCTTC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	310
BsrGI	TGTACA	1 cut(s)	297
BsrI	ACTGG	2 cut(s)	104, 321
BssAI	RCCGGY	1 cut(s)	310
BssECI	CCNNGG	2 cut(s)	147, 264
BssMI	GATC	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	492
BstAUI	TGTACA	1 cut(s)	297
BstC8I	GCNNGC	1 cut(s)	353
BstDEI	CTNAG	1 cut(s)	113
BstDSI	CCRYGG	1 cut(s)	264
BstFNI	CGCG	4 cut(s)	266, 404, 406, 424
BstHHI	GCGC	3 cut(s)	406, 469, 497
BstKTI	GATC	1 cut(s)	185
BstMAI	GTCTC	2 cut(s)	402, 531
BstMBI	GATC	1 cut(s)	182
BstMCI	CGRYCG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 492
BstSFI	CTRYAG	2 cut(s)	206, 412
BstSLI	GKGCMC	1 cut(s)	488
BstUI	CGCG	4 cut(s)	266, 404, 406, 424
BstV1I	GCAGC	2 cut(s)	397, 479
BstXI	CCANNNNNNTGG	1 cut(s)	48
BstZI	CGGCCG	1 cut(s)	195
BsuI	GTATCC	1 cut(s)	430
BsuRI	GGCC	2 cut(s)	98, 197
BtgI	CCRYGG	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	314
BveI	ACCTGC	1 cut(s)	356
Cac8I	GCNNGC	1 cut(s)	353
CfoI	GCGC	3 cut(s)	406, 469, 497
Cfr10I	RCCGGY	1 cut(s)	310
Cfr13I	GGNCC	2 cut(s)	97, 337
Cfr42I	CCGCGG	1 cut(s)	267
CseI	GACGC	1 cut(s)	410
Csp6I	GTAC	4 cut(s)	211, 298, 394, 426
CviAII	CATG	1 cut(s)	295
CviQI	GTAC	4 cut(s)	211, 298, 394, 426
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	1 cut(s)	184
DpnII	GATC	1 cut(s)	182
EaeI	YGGCCR	1 cut(s)	195
EagI	CGGCCG	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
EciI	GGCGGA	1 cut(s)	65
EclXI	CGGCCG	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	337
Eco52I	CGGCCG	1 cut(s)	195
Eco88I	CYCGRG	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	1 cut(s)	298
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FatI	CATG	1 cut(s)	294
FauI	CCCGC	1 cut(s)	327
Fnu4HI	GCNGC	6 cut(s)	12, 160, 195, 267, 386, 493
Fsp4HI	GCNGC	6 cut(s)	12, 160, 195, 267, 386, 493
GlaI	GCGC	3 cut(s)	405, 468, 496
GluI	GCNGC	6 cut(s)	12, 160, 195, 267, 386, 493
HaeIII	GGCC	2 cut(s)	98, 197
HapII	CCGG	2 cut(s)	311, 391
HgaI	GACGC	1 cut(s)	410
HhaI	GCGC	3 cut(s)	406, 469, 497
Hin1II	CATG	1 cut(s)	298
Hin6I	GCGC	3 cut(s)	404, 467, 495
HinP1I	GCGC	3 cut(s)	404, 467, 495
HindIII	AAGCTT	2 cut(s)	110, 137
HinfI	GANTC	3 cut(s)	200, 362, 380
HpaII	CCGG	2 cut(s)	311, 391
Hpy188I	TCNGA	1 cut(s)	367
Hpy188III	TCNNGA	1 cut(s)	528
HpyAV	CCTTC	2 cut(s)	92, 133
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4V	TGCA	3 cut(s)	119, 208, 344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 492
HpyF3I	CTNAG	1 cut(s)	113
Hsp92II	CATG	1 cut(s)	298
HspAI	GCGC	3 cut(s)	404, 467, 495
KspI	CCGCGG	1 cut(s)	267
Kzo9I	GATC	1 cut(s)	182
LguI	GCTCTTC	1 cut(s)	149
LmnI	GCTCC	2 cut(s)	30, 393
LpnPI	CCDG	7 cut(s)	117, 231, 243, 302, 324, 361, 404
Lsp1109I	GCAGC	2 cut(s)	397, 479
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	1 cut(s)	184
MboI	GATC	1 cut(s)	182
MboII	GAAGA	1 cut(s)	166
MhlI	GDGCHC	2 cut(s)	488, 544
MluCI	AATT	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	389
MnlI	CCTC	4 cut(s)	38, 39, 99, 334
MseI	TTAA	4 cut(s)	135, 164, 504, 553
MslI	CAYNNNNRTG	1 cut(s)	46
MspA1I	CMGCKG	2 cut(s)	194, 266
MspI	CCGG	2 cut(s)	311, 391
MvnI	CGCG	4 cut(s)	266, 404, 406, 424
MwoI	GCNNNNNNNGC	2 cut(s)	11, 492
NdeII	GATC	1 cut(s)	182
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	1 cut(s)	338
NmeAIII	GCCGAG	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	256
PciSI	GCTCTTC	1 cut(s)	149
PfeI	GAWTC	2 cut(s)	200, 362
Pfl23II	CGTACG	1 cut(s)	425
PkrI	GCNGC	6 cut(s)	13, 161, 196, 268, 387, 494
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PspLI	CGTACG	1 cut(s)	425
PspN4I	GGNNCC	1 cut(s)	338
PspPI	GGNCC	2 cut(s)	97, 337
PstI	CTGCAG	1 cut(s)	210
RsaI	GTAC	4 cut(s)	212, 299, 395, 427
RsaNI	GTAC	4 cut(s)	211, 298, 394, 426
RseI	CAYNNNNRTG	1 cut(s)	46
SacII	CCGCGG	1 cut(s)	267
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	4 cut(s)	135, 164, 504, 553
SatI	GCNGC	6 cut(s)	12, 160, 195, 267, 386, 493
Sau3AI	GATC	1 cut(s)	182
Sau96I	GGNCC	2 cut(s)	97, 337
SchI	GAGTC	1 cut(s)	389
SduI	GDGCHC	2 cut(s)	488, 544
SetI	ASST	7 cut(s)	50, 114, 125, 141, 350, 373, 390
SfcI	CTRYAG	2 cut(s)	206, 412
Sfr303I	CCGCGG	1 cut(s)	267
SgrBI	CCGCGG	1 cut(s)	267
SinI	GGWCC	1 cut(s)	337
SmiMI	CAYNNNNRTG	1 cut(s)	46
Sse9I	AATT	1 cut(s)	132
SsiI	CCGC	7 cut(s)	11, 76, 160, 194, 264, 266, 334
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	215
TaqI	TCGA	2 cut(s)	529, 544
TasI	AATT	1 cut(s)	132
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	4 cut(s)	14, 162, 197, 269
TfiI	GAWTC	2 cut(s)	200, 362
Tru1I	TTAA	4 cut(s)	135, 164, 504, 553
Tru9I	TTAA	4 cut(s)	135, 164, 504, 553
TscAI	CASTG	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	2 cut(s)	385, 492
Tsp45I	GTSAC	1 cut(s)	256
TspGWI	ACGGA	2 cut(s)	329, 392
TspRI	CASTG	1 cut(s)	321
VpaK11BI	GGWCC	1 cut(s)	337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.