Rw2G033030

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0014649
Physical Location & Seq
Forward (+)
54173813 .. 54176866
3054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G033030.1

Sequence Viewer

Length: 1146 bp
ATGGCAACGGCGGCTACTAATCTGCTCTTCCAAACAAACCCATTGAAGTGGAAGCAATGCTGCCCAAATCGGTTCCGCCTGCTTCGTCCTCTCTCGGCCCAACCAGTCAAGCTCAGTGCAACCTTCAACCAAATTAAGCTTCAATCCTTGGAGAAGAGCCCCTTAATCGCAACCCTAAACCCGAAATCAAAATCAGCGGCCGAATCTCTGCAGTACCGTCCTGCAGAAAACCCTGAAACATGTGTCGTCAATAAACTATGGAAATATGCTCGGAAACCCGTGACCGCGGCTGTGCTTTTGGCACTGGCTTCCTCTGTTGGGCGGGTCCGTGCAACCTGCTCGCCCTACGATTCCGCTGATACGGAGTCGCAGCTCCGGTACATTGACGCGCGAAACTATAGTATGTCGCGTACGAGTGTGGATACTATGGGGTGGGTGTTATATCCTTATGCGCTATACTATGGGGCACTTGCTGCGCTATTCGTAATGTGCCGATTGCTAAAATGTCTCGACCCTTCTGTGCTCGAATGGTTTGAGAGCCAAGTCAAATTCTTGTTCTTGATCGTTATTATTCATCATATGTGGGCAACACGCCATAATCCATCAACTGTTGTCAAGCTTCAGCTCCAGGTTAATTTATCGAATGCTGGACGAGCACTCCAAACGGATCTTAATCGGATTGCTGAAACTGCAAATACTTCTACCTATACGGGTGTAAACAGTATTTTGACAGAGACAGCAGGAACTTTTCTCAGGCATCCTGATTGTTTCATCTCAGTCAGTTCATATGTGGCTGGGAAATATGGTAGGGATGGTGCACAAAATTACTTGGATCAACTATCTCTTGAAGAGAGGATTAAATTAAGCGAAAAGCCACTTGTCAATGTGAAGAACTTAAAAGCAGAAAGCTCAACAAGCCAAAAATCAGCAAATGAAATCCAAGATGAATATATGGAGGTTATAATATTGGTGGCTGTTGTCGGGAAGCATGAGTTTCCCACCATCAATTCCTGGGATGACTTGAAGGAAGTTTTGCAACTGCTTACATCCATAGATCCTGATGACGGTATATATGCATATGGAGTAGAAGTGTTGTGGAGTCCTCAATCCTCTTCCTCATGGGGCTGGAGAAGATGGTTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

381

Amino Acids

42.89

Weight (kDa)

8.91

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 207 - 371 2.8e-35 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 962
Acc36I ACCTGC 1 cut(s) 344
AccII CGCG 4 cut(s) 287, 389, 391, 409
AciI CCGC 7 cut(s) 11, 76, 197, 285, 287, 322, 354
AclWI GGATC 3 cut(s) 675, 840, 1049
AcoI YGGCCR 1 cut(s) 198
AcsI RAATTY 1 cut(s) 548
AcuI CTGAAG 1 cut(s) 605
AfaI GTAC 3 cut(s) 215, 380, 412
AfiI CCNNNNNNNGG 2 cut(s) 318, 1064
AflIII ACRYGT 1 cut(s) 239
AgsI TTSAA 6 cut(s) 46, 127, 143, 848, 1024, 1141
AjnI CCWGG 2 cut(s) 627, 1010
AjuI GAANNNNNNNTTGG 2 cut(s) 123, 155
AluBI AGCT 6 cut(s) 112, 139, 373, 619, 625, 909
AluI AGCT 6 cut(s) 112, 139, 373, 619, 625, 909
Alw21I GWGCWC 3 cut(s) 525, 658, 820
Alw26I GTCTC 2 cut(s) 512, 728
Alw44I GTGCAC 1 cut(s) 816
AlwI GGATC 3 cut(s) 675, 840, 1049
AoxI GGCC 2 cut(s) 96, 198
ApaLI GTGCAC 1 cut(s) 816
ApeKI GCWGC 3 cut(s) 60, 370, 473
ApoI RAATTY 1 cut(s) 548
AspLEI GCGC 3 cut(s) 391, 454, 478
AspS9I GGNCC 2 cut(s) 97, 325
AvaII GGWCC 1 cut(s) 325
BaeGI GKGCMC 2 cut(s) 469, 820
BanII GRGCYC 1 cut(s) 161
Bbv12I GWGCWC 3 cut(s) 525, 658, 820
BbvI GCAGC 3 cut(s) 47, 382, 460
BccI CCATC 4 cut(s) 610, 806, 1010, 1128
BceAI ACGGC 1 cut(s) 24
BcgI CGANNNNNNTGC 2 cut(s) 321, 355
BciT130I CCWGG 2 cut(s) 629, 1012
BciVI GTATCC 1 cut(s) 415
BcoDI GTCTC 2 cut(s) 512, 728
BfmI CTRYAG 3 cut(s) 209, 222, 397
BfuAI ACCTGC 1 cut(s) 344
BfuI GTATCC 1 cut(s) 415
BisI GCNGC 6 cut(s) 12, 61, 198, 288, 371, 474
BlsI GCNGC 6 cut(s) 13, 62, 199, 289, 372, 475
Bme1390I CCNGG 2 cut(s) 629, 1012
Bme18I GGWCC 1 cut(s) 325
BmgT120I GGNCC 2 cut(s) 97, 325
BmiI GGNNCC 2 cut(s) 74, 326
BmrFI CCNGG 2 cut(s) 629, 1012
BmsI GCATC 1 cut(s) 766
BpmI CTGGAG 1 cut(s) 611
BsaBI GATNNNNATC 1 cut(s) 672
BsaJI CCNNGG 3 cut(s) 147, 285, 1011
BsaWI WCCGGW 1 cut(s) 375
BsaXI ACNNNNNCTCC 4 cut(s) 642, 672, 1074, 1104
Bsc4I CCNNNNNNNGG 2 cut(s) 318, 1064
Bse1I ACTGG 2 cut(s) 104, 309
Bse3DI GCAATG 1 cut(s) 62
Bse8I GATNNNNATC 1 cut(s) 672
BseBI CCWGG 2 cut(s) 629, 1012
BseDI CCNNGG 3 cut(s) 147, 285, 1011
BseGI GGATG 4 cut(s) 757, 817, 1021, 1046
BseJI GATNNNNATC 1 cut(s) 672
BseLI CCNNNNNNNGG 2 cut(s) 318, 1064
BseMI GCAATG 1 cut(s) 62
BseMII CTCAG 3 cut(s) 127, 766, 789
BseNI ACTGG 2 cut(s) 104, 309
BseSI GKGCMC 2 cut(s) 469, 820
BseX3I CGGCCG 1 cut(s) 198
BseXI GCAGC 3 cut(s) 47, 382, 460
BseYI CCCAGC 1 cut(s) 794
Bsh1236I CGCG 4 cut(s) 287, 389, 391, 409
Bsh1285I CGRYCG 1 cut(s) 201
BshFI GGCC 2 cut(s) 98, 200
BsiEI CGRYCG 1 cut(s) 201
BsiHKAI GWGCWC 3 cut(s) 525, 658, 820
BsiSI CCGG 1 cut(s) 376
BsiWI CGTACG 1 cut(s) 410
BslI CCNNNNNNNGG 2 cut(s) 318, 1064
BsmAI GTCTC 2 cut(s) 512, 728
BsmI GAATGC 1 cut(s) 649
BsnI GGCC 2 cut(s) 98, 200
Bsp1286I GDGCHC 5 cut(s) 161, 469, 525, 658, 820
Bsp143I GATC 4 cut(s) 561, 667, 832, 1054
BspACI CCGC 7 cut(s) 11, 76, 197, 285, 287, 322, 354
BspANI GGCC 2 cut(s) 98, 200
BspCNI CTCAG 3 cut(s) 126, 765, 788
BspFNI CGCG 4 cut(s) 287, 389, 391, 409
BspLI GGNNCC 2 cut(s) 74, 326
BspMAI CTGCAG 2 cut(s) 213, 226
BspMI ACCTGC 1 cut(s) 344
BspPI GGATC 3 cut(s) 675, 840, 1049
BspQI GCTCTTC 2 cut(s) 32, 149
BsrDI GCAATG 1 cut(s) 62
BsrI ACTGG 2 cut(s) 104, 309
BssECI CCNNGG 3 cut(s) 147, 285, 1011
BssMI GATC 4 cut(s) 561, 667, 832, 1054
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 2 cut(s) 629, 1012
Bst4CI ACNGT 4 cut(s) 218, 610, 722, 1067
Bst6I CTCTTC 4 cut(s) 32, 149, 843, 1117
BstAPI GCANNNNNTGC 1 cut(s) 473
BstC8I GCNNGC 2 cut(s) 80, 341
BstDEI CTNAG 3 cut(s) 113, 752, 775
BstDSI CCRYGG 1 cut(s) 285
BstF5I GGATG 4 cut(s) 757, 817, 1021, 1046
BstFNI CGCG 4 cut(s) 287, 389, 391, 409
BstHHI GCGC 3 cut(s) 391, 454, 478
BstKTI GATC 4 cut(s) 564, 670, 835, 1057
BstMAI GTCTC 2 cut(s) 512, 728
BstMBI GATC 4 cut(s) 561, 667, 832, 1054
BstMCI CGRYCG 1 cut(s) 201
BstMWI GCNNNNNNNGC 5 cut(s) 11, 473, 653, 689, 915
BstNI CCWGG 2 cut(s) 629, 1012
BstNSI RCATGY 1 cut(s) 243
BstSCI CCNGG 2 cut(s) 627, 1010
BstSFI CTRYAG 3 cut(s) 209, 222, 397
BstSLI GKGCMC 2 cut(s) 469, 820
BstUI CGCG 4 cut(s) 287, 389, 391, 409
BstV1I GCAGC 3 cut(s) 47, 382, 460
BstX2I RGATCY 2 cut(s) 667, 1054
BstXI CCANNNNNNTGG 1 cut(s) 48
BstYI RGATCY 2 cut(s) 667, 1054
BstZI CGGCCG 1 cut(s) 198
BsuI GTATCC 1 cut(s) 415
BsuRI GGCC 2 cut(s) 98, 200
BtgI CCRYGG 1 cut(s) 285
BtsCI GGATG 4 cut(s) 757, 817, 1021, 1046
BtsIMutI CAGTG 2 cut(s) 121, 302
BveI ACCTGC 1 cut(s) 344
Cac8I GCNNGC 2 cut(s) 80, 341
CfoI GCGC 3 cut(s) 391, 454, 478
Cfr13I GGNCC 2 cut(s) 97, 325
Cfr42I CCGCGG 1 cut(s) 288
CseI GACGC 1 cut(s) 395
Csp6I GTAC 3 cut(s) 214, 379, 411
CviAII CATG 3 cut(s) 240, 989, 1119
CviQI GTAC 3 cut(s) 214, 379, 411
DdeI CTNAG 3 cut(s) 113, 752, 775
DpnI GATC 4 cut(s) 563, 669, 834, 1056
DpnII GATC 4 cut(s) 561, 667, 832, 1054
EaeI YGGCCR 1 cut(s) 198
EagI CGGCCG 1 cut(s) 198
Eam1104I CTCTTC 4 cut(s) 32, 149, 843, 1117
EarI CTCTTC 4 cut(s) 32, 149, 843, 1117
EciI GGCGGA 1 cut(s) 65
EclXI CGGCCG 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 325
Eco52I CGGCCG 1 cut(s) 198
Eco57I CTGAAG 1 cut(s) 605
EcoRII CCWGG 2 cut(s) 627, 1010
EcoT14I CCWWGG 1 cut(s) 147
EcoT22I ATGCAT 1 cut(s) 1078
EcoT38I GRGCYC 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 3 cut(s) 243, 992, 1122
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FatI CATG 3 cut(s) 239, 988, 1118
FauI CCCGC 1 cut(s) 315
FauNDI CATATG 3 cut(s) 579, 787, 1078
Fnu4HI GCNGC 6 cut(s) 12, 61, 198, 288, 371, 474
FokI GGATG 4 cut(s) 744, 824, 1028, 1033
FriOI GRGCYC 1 cut(s) 161
Fsp4HI GCNGC 6 cut(s) 12, 61, 198, 288, 371, 474
GlaI GCGC 3 cut(s) 390, 453, 477
GluI GCNGC 6 cut(s) 12, 61, 198, 288, 371, 474
GsaI CCCAGC 1 cut(s) 798
GsuI CTGGAG 1 cut(s) 611
HaeIII GGCC 2 cut(s) 98, 200
HapII CCGG 1 cut(s) 376
HgaI GACGC 1 cut(s) 395
HhaI GCGC 3 cut(s) 391, 454, 478
Hin1II CATG 3 cut(s) 243, 992, 1122
Hin6I GCGC 3 cut(s) 389, 452, 476
HinP1I GCGC 3 cut(s) 389, 452, 476
HindIII AAGCTT 2 cut(s) 137, 617
HinfI GANTC 4 cut(s) 203, 350, 365, 1099
HpaII CCGG 1 cut(s) 376
Hpy166II GTNNAC 2 cut(s) 718, 818
Hpy188I TCNGA 2 cut(s) 273, 678
Hpy188III TCNNGA 6 cut(s) 509, 559, 761, 845, 982, 1058
Hpy8I GTNNAC 2 cut(s) 718, 818
HpyAV CCTTC 3 cut(s) 133, 525, 1018
HpyCH4III ACNGT 4 cut(s) 218, 610, 722, 1067
HpyCH4V TGCA 8 cut(s) 119, 211, 224, 332, 692, 818, 1036, 1076
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 473, 653, 689, 915
HpyF3I CTNAG 3 cut(s) 113, 752, 775
Hsp92II CATG 3 cut(s) 243, 992, 1122
HspAI GCGC 3 cut(s) 389, 452, 476
KspI CCGCGG 1 cut(s) 288
Kzo9I GATC 4 cut(s) 561, 667, 832, 1054
LguI GCTCTTC 2 cut(s) 32, 149
LmnI GCTCC 2 cut(s) 378, 630
Lsp1109I GCAGC 3 cut(s) 47, 382, 460
LweI GCATC 1 cut(s) 766
MaeIII GTNAC 1 cut(s) 280
MalI GATC 4 cut(s) 563, 669, 834, 1056
MboI GATC 4 cut(s) 561, 667, 832, 1054
MboII GAAGA 6 cut(s) 19, 166, 860, 901, 1104, 1143
MflI RGATCY 2 cut(s) 667, 1054
MhlI GDGCHC 5 cut(s) 161, 469, 525, 658, 820
MluCI AATT 6 cut(s) 132, 548, 634, 823, 860, 1006
MlyI GAGTC 2 cut(s) 374, 1108
MnlI CCTC 7 cut(s) 99, 322, 846, 949, 1113, 1120, 1126
Mph1103I ATGCAT 1 cut(s) 1078
MseI TTAA 7 cut(s) 135, 164, 633, 672, 858, 863, 896
MslI CAYNNNNRTG 1 cut(s) 46
MspA1I CMGCKG 3 cut(s) 197, 287, 356
MspI CCGG 1 cut(s) 376
MspR9I CCNGG 2 cut(s) 629, 1012
Mva1269I GAATGC 1 cut(s) 649
MvaI CCWGG 2 cut(s) 629, 1012
MvnI CGCG 4 cut(s) 287, 389, 391, 409
MwoI GCNNNNNNNGC 5 cut(s) 11, 473, 653, 689, 915
NdeI CATATG 3 cut(s) 579, 787, 1078
NdeII GATC 4 cut(s) 561, 667, 832, 1054
NlaIII CATG 3 cut(s) 243, 992, 1122
NlaIV GGNNCC 2 cut(s) 74, 326
NmeAIII GCCGAG 1 cut(s) 74
NmuCI GTSAC 1 cut(s) 280
NsiI ATGCAT 1 cut(s) 1078
NspI RCATGY 1 cut(s) 243
PciI ACATGT 1 cut(s) 239
PciSI GCTCTTC 2 cut(s) 32, 149
PctI GAATGC 1 cut(s) 649
PfeI GAWTC 2 cut(s) 203, 350
Pfl23II CGTACG 1 cut(s) 410
PkrI GCNGC 6 cut(s) 13, 62, 199, 289, 372, 475
PleI GAGTC 2 cut(s) 373, 1107
PpsI GAGTC 2 cut(s) 373, 1107
PscI ACATGT 1 cut(s) 239
PsiI TTATAA 1 cut(s) 962
Psp6I CCWGG 2 cut(s) 627, 1010
PspFI CCCAGC 1 cut(s) 794
PspGI CCWGG 2 cut(s) 627, 1010
PspLI CGTACG 1 cut(s) 410
PspN4I GGNNCC 2 cut(s) 74, 326
PspPI GGNCC 2 cut(s) 97, 325
PstI CTGCAG 2 cut(s) 213, 226
PsuI RGATCY 2 cut(s) 667, 1054
RsaI GTAC 3 cut(s) 215, 380, 412
RsaNI GTAC 3 cut(s) 214, 379, 411
RseI CAYNNNNRTG 1 cut(s) 46
SacII CCGCGG 1 cut(s) 288
SapI GCTCTTC 2 cut(s) 32, 149
SaqAI TTAA 7 cut(s) 135, 164, 633, 672, 858, 863, 896
SatI GCNGC 6 cut(s) 12, 61, 198, 288, 371, 474
Sau3AI GATC 4 cut(s) 561, 667, 832, 1054
Sau96I GGNCC 2 cut(s) 97, 325
SchI GAGTC 2 cut(s) 374, 1108
ScrFI CCNGG 2 cut(s) 629, 1012
SduI GDGCHC 5 cut(s) 161, 469, 525, 658, 820
SfaNI GCATC 1 cut(s) 766
SfcI CTRYAG 3 cut(s) 209, 222, 397
Sfr303I CCGCGG 1 cut(s) 288
SgrBI CCGCGG 1 cut(s) 288
SinI GGWCC 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 46
Sse9I AATT 6 cut(s) 132, 548, 634, 823, 860, 1006
SsiI CCGC 7 cut(s) 11, 76, 197, 285, 287, 322, 354
SspI AATATT 1 cut(s) 966
StyD4I CCNGG 2 cut(s) 627, 1010
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 4 cut(s) 218, 610, 722, 1067
TaqI TCGA 3 cut(s) 510, 525, 641
TasI AATT 6 cut(s) 132, 548, 634, 823, 860, 1006
TauI GCSGC 3 cut(s) 14, 200, 290
TfiI GAWTC 2 cut(s) 203, 350
Tru1I TTAA 7 cut(s) 135, 164, 633, 672, 858, 863, 896
Tru9I TTAA 7 cut(s) 135, 164, 633, 672, 858, 863, 896
TscAI CASTG 2 cut(s) 121, 309
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 3 cut(s) 60, 370, 473
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 5 cut(s) 563, 760, 774, 948, 960
TspGWI ACGGA 3 cut(s) 317, 377, 680
TspRI CASTG 2 cut(s) 121, 309
VneI GTGCAC 1 cut(s) 816
VpaK11BI GGWCC 1 cut(s) 325
XapI RAATTY 1 cut(s) 548
XceI RCATGY 1 cut(s) 243
Zsp2I ATGCAT 1 cut(s) 1078
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.