Rroxscaffold_1G00047270

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014649
Physical Location & Seq
Forward (+)
66803553 .. 66806902
3350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00047270.1

Sequence Viewer

Length: 1194 bp
ATGGCAACGGCGGCTGCGAATTTGCTCTTCCAAACAAACCCATTCAAGTGGAAGCCAAATCGGTTCCGCCCCCTTCGTCCTCTTCTTCCGGCCCAACCAGTCAAACTCAAACTCAGTGCAACGCCGAAATCAAATTCTTCTCTGCAGTACTGTCCAGCAGAAAAGCTTCAATCCTTGGAGATCACCAAAACTAACCTGAAATCAAACTCATCTCTGCAGTACCACCGTCCAGCAGCTGAAACATGTGTATGGAAATTTGCTGTCAAGGTGACGGCGGGTGTGGTTTTGGGTGTGTTGTTGCTCATGTATAGACCCAAACCGGCACTGGCCGGCTCTGTGGGGCGGGTCCGTGCAACCTGTTTGCCCCTCGATCCCGCTGATGAGGATTTGGAGTCGGATGGCCGGTACGTTGCAGCGCGACGGTACAGTATGACGCGTACGATTGTGGATACTATGGGGATCACTTTATATCCTTATGCGCTATACTATGGGGCACTTACCGTGCTATTTATAATGTGCCGATGCCTAAAATGTCTTGACCCTTCTGTGCTCGATTGGTTTAAGCGCCAAGTCAAATTCTTGGTATTCATTCTACTTGCTCATATTAATTGGGCAACACGCCATAATCCATCTACTGTTGTCAAGCTTCACCTCCAGTCACCATCAGTTGATTTCATTCCCTTTGATCCCATCTCTAAGGTTAATTTATCCAGTGCTGGACGAGCACTCCAAACGGATCTTAATCGGATTGCTGAAACTGCAAATACTTCTACCTATAAAGGGGAAATAGGAGAGACAGCAGTAACTTTTCTTAAGCATCCTAATTGTTTCATCTCAGCCAGTACATATGTGGCTGAGAATTATGCGGAAAGTTCAACAAGCCAAAAATCAGCAAATGAAATCCAAGATGAATATATTGAGGTAGATGCCAATCAACTTGATATAAAAGCAGAAAGCTCAACAAGCCAAAAATCAGCAAATGAAATCCAAGATGAATATATGGAGGTTATAATATTGGTGGCTGTTGTCGCAAAGCATGAGTTTCCCACAATCAATTCCTGGGATGACTTGAAGGAAGTATTGCAATTGCTTACATCCGTAGATCCTGAAGACGGGAGTAGAAGTGTTGTGGAGTCCGAAGTCCTCTTCCTCGACAGGCAGGAGAAGATATTTAAAGATGGTTCAGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

397

Amino Acids

44.35

Weight (kDa)

6.35

Isoelectric Point (pI)

41.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 234 - 382 2.2e-14 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 512, 1010
AccII CGCG 2 cut(s) 418, 436
AciI CCGC 6 cut(s) 11, 67, 275, 343, 375, 866
AclWI GGATC 5 cut(s) 365, 467, 680, 744, 1097
AcoI YGGCCR 2 cut(s) 327, 400
AcsI RAATTY 4 cut(s) 19, 133, 254, 575
AcuI CTGAAG 1 cut(s) 1128
AfaI GTAC 6 cut(s) 149, 221, 407, 425, 439, 844
AfiI CCNNNNNNNGG 2 cut(s) 780, 1112
AflII CTTAAG 1 cut(s) 812
AflIII ACRYGT 2 cut(s) 242, 434
AgsI TTSAA 4 cut(s) 46, 170, 876, 1072
AjnI CCWGG 1 cut(s) 1058
AluBI AGCT 4 cut(s) 166, 236, 646, 957
AluI AGCT 4 cut(s) 166, 236, 646, 957
Alw21I GWGCWC 2 cut(s) 552, 727
Alw26I GTCTC 1 cut(s) 788
AlwI GGATC 5 cut(s) 365, 467, 680, 744, 1097
AlwNI CAGNNNCTG 1 cut(s) 236
AoxI GGCC 3 cut(s) 90, 327, 400
ApeKI GCWGC 3 cut(s) 14, 233, 413
ApoI RAATTY 4 cut(s) 19, 133, 254, 575
AseI ATTAAT 1 cut(s) 606
Asp700I GAANNNNTTC 1 cut(s) 165
AspLEI GCGC 3 cut(s) 418, 481, 567
AspS9I GGNCC 2 cut(s) 91, 346
AsuHPI GGTGA 4 cut(s) 175, 280, 641, 651
AvaII GGWCC 1 cut(s) 346
BaeGI GKGCMC 1 cut(s) 496
BbsI GAAGAC 1 cut(s) 1116
Bbv12I GWGCWC 2 cut(s) 552, 727
BbvI GCAGC 2 cut(s) 245, 425
BccI CCATC 5 cut(s) 392, 637, 670, 698, 1172
BceAI ACGGC 2 cut(s) 24, 288
BciT130I CCWGG 1 cut(s) 1060
BciVI GTATCC 1 cut(s) 442
BcoDI GTCTC 1 cut(s) 788
BfmI CTRYAG 2 cut(s) 143, 215
BfoI RGCGCY 1 cut(s) 568
BfrI CTTAAG 1 cut(s) 812
BfuI GTATCC 1 cut(s) 442
BisI GCNGC 4 cut(s) 12, 15, 234, 414
BlsI GCNGC 4 cut(s) 13, 16, 235, 415
BmcAI AGTACT 1 cut(s) 149
Bme1390I CCNGG 1 cut(s) 1060
Bme18I GGWCC 1 cut(s) 346
BmgT120I GGNCC 2 cut(s) 91, 346
BmiI GGNNCC 2 cut(s) 65, 347
BmrFI CCNGG 1 cut(s) 1060
BmsI GCATC 3 cut(s) 512, 826, 916
BpiI GAAGAC 1 cut(s) 1116
BpmI CTGGAG 1 cut(s) 638
BsaBI GATNNNNATC 2 cut(s) 741, 930
BsaJI CCNNGG 2 cut(s) 174, 1059
BsaXI ACNNNNNCTCC 4 cut(s) 711, 741, 1108, 1138
Bsc4I CCNNNNNNNGG 2 cut(s) 780, 1112
Bse118I RCCGGY 3 cut(s) 319, 329, 402
Bse1I ACTGG 5 cut(s) 98, 330, 655, 711, 840
Bse8I GATNNNNATC 2 cut(s) 741, 930
BseBI CCWGG 1 cut(s) 1060
BseDI CCNNGG 2 cut(s) 174, 1059
BseGI GGATG 4 cut(s) 403, 817, 1069, 1094
BseJI GATNNNNATC 2 cut(s) 741, 930
BseLI CCNNNNNNNGG 2 cut(s) 780, 1112
BseMII CTCAG 3 cut(s) 127, 846, 849
BseNI ACTGG 5 cut(s) 98, 330, 655, 711, 840
BseSI GKGCMC 1 cut(s) 496
BseXI GCAGC 2 cut(s) 245, 425
Bsh1236I CGCG 2 cut(s) 418, 436
BshFI GGCC 3 cut(s) 92, 329, 402
BsiHKAI GWGCWC 2 cut(s) 552, 727
BsiSI CCGG 4 cut(s) 89, 320, 330, 403
BsiWI CGTACG 1 cut(s) 437
BslI CCNNNNNNNGG 2 cut(s) 780, 1112
BsmAI GTCTC 1 cut(s) 788
BsnI GGCC 3 cut(s) 92, 329, 402
Bsp1286I GDGCHC 3 cut(s) 496, 552, 727
Bsp143I GATC 6 cut(s) 180, 370, 459, 685, 736, 1102
BspACI CCGC 6 cut(s) 11, 67, 275, 343, 375, 866
BspANI GGCC 3 cut(s) 92, 329, 402
BspCNI CTCAG 3 cut(s) 126, 847, 848
BspFNI CGCG 2 cut(s) 418, 436
BspLI GGNNCC 2 cut(s) 65, 347
BspMAI CTGCAG 2 cut(s) 147, 219
BspPI GGATC 5 cut(s) 365, 467, 680, 744, 1097
BspQI GCTCTTC 1 cut(s) 32
BspTI CTTAAG 1 cut(s) 812
BsrFI RCCGGY 3 cut(s) 319, 329, 402
BsrI ACTGG 5 cut(s) 98, 330, 655, 711, 840
BssAI RCCGGY 3 cut(s) 319, 329, 402
BssECI CCNNGG 2 cut(s) 174, 1059
BssMI GATC 6 cut(s) 180, 370, 459, 685, 736, 1102
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 1060
Bst4CI ACNGT 6 cut(s) 152, 227, 423, 428, 502, 637
Bst6I CTCTTC 3 cut(s) 32, 87, 1151
BstAFI CTTAAG 1 cut(s) 812
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 4 cut(s) 113, 696, 835, 855
BstF5I GGATG 4 cut(s) 403, 817, 1069, 1094
BstFNI CGCG 2 cut(s) 418, 436
BstH2I RGCGCY 1 cut(s) 568
BstHHI GCGC 3 cut(s) 418, 481, 567
BstKTI GATC 6 cut(s) 183, 373, 462, 688, 739, 1105
BstMAI GTCTC 1 cut(s) 788
BstMBI GATC 6 cut(s) 180, 370, 459, 685, 736, 1102
BstMWI GCNNNNNNNGC 5 cut(s) 11, 722, 758, 963, 1028
BstNI CCWGG 1 cut(s) 1060
BstNSI RCATGY 1 cut(s) 246
BstSCI CCNGG 1 cut(s) 1058
BstSFI CTRYAG 2 cut(s) 143, 215
BstSLI GKGCMC 1 cut(s) 496
BstUI CGCG 2 cut(s) 418, 436
BstV1I GCAGC 2 cut(s) 245, 425
BstV2I GAAGAC 1 cut(s) 1116
BstX2I RGATCY 2 cut(s) 736, 1102
BstXI CCANNNNNNTGG 1 cut(s) 48
BstYI RGATCY 2 cut(s) 736, 1102
BsuI GTATCC 1 cut(s) 442
BsuRI GGCC 3 cut(s) 92, 329, 402
BtsCI GGATG 4 cut(s) 403, 817, 1069, 1094
BtsIMutI CAGTG 3 cut(s) 121, 323, 718
Cac8I GCNNGC 1 cut(s) 331
CaiI CAGNNNCTG 1 cut(s) 236
CfoI GCGC 3 cut(s) 418, 481, 567
Cfr10I RCCGGY 3 cut(s) 319, 329, 402
Cfr13I GGNCC 2 cut(s) 91, 346
CseI GACGC 1 cut(s) 442
Csp6I GTAC 6 cut(s) 148, 220, 406, 424, 438, 843
CviAII CATG 3 cut(s) 243, 304, 1037
CviQI GTAC 6 cut(s) 148, 220, 406, 424, 438, 843
DdeI CTNAG 4 cut(s) 113, 696, 835, 855
DpnI GATC 6 cut(s) 182, 372, 461, 687, 738, 1104
DpnII GATC 6 cut(s) 180, 370, 459, 685, 736, 1102
DraI TTTAAA 1 cut(s) 1174
EaeI YGGCCR 2 cut(s) 327, 400
Eam1104I CTCTTC 3 cut(s) 32, 87, 1151
EarI CTCTTC 3 cut(s) 32, 87, 1151
EciI GGCGGA 1 cut(s) 56
Eco130I CCWWGG 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 346
Eco57I CTGAAG 1 cut(s) 1128
EcoRII CCWGG 1 cut(s) 1058
EcoT14I CCWWGG 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 3 cut(s) 246, 307, 1040
FatI CATG 3 cut(s) 242, 303, 1036
FauI CCCGC 3 cut(s) 268, 336, 382
FauNDI CATATG 1 cut(s) 847
Fnu4HI GCNGC 4 cut(s) 12, 15, 234, 414
FokI GGATG 4 cut(s) 410, 804, 1076, 1081
Fsp4HI GCNGC 4 cut(s) 12, 15, 234, 414
GlaI GCGC 3 cut(s) 417, 480, 566
GluI GCNGC 4 cut(s) 12, 15, 234, 414
GsuI CTGGAG 1 cut(s) 638
HaeII RGCGCY 1 cut(s) 568
HaeIII GGCC 3 cut(s) 92, 329, 402
HapII CCGG 4 cut(s) 89, 320, 330, 403
HgaI GACGC 1 cut(s) 442
HhaI GCGC 3 cut(s) 418, 481, 567
Hin1II CATG 3 cut(s) 246, 307, 1040
Hin6I GCGC 3 cut(s) 416, 479, 565
HinP1I GCGC 3 cut(s) 416, 479, 565
HindIII AAGCTT 2 cut(s) 164, 644
HinfI GANTC 2 cut(s) 392, 1133
HpaII CCGG 4 cut(s) 89, 320, 330, 403
HphI GGTGA 4 cut(s) 175, 280, 641, 651
Hpy188I TCNGA 4 cut(s) 397, 747, 1138, 1186
Hpy188III TCNNGA 2 cut(s) 536, 1106
Hpy99I CGWCG 1 cut(s) 423
HpyAV CCTTC 3 cut(s) 83, 552, 1066
HpyCH4III ACNGT 6 cut(s) 152, 227, 423, 428, 502, 637
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 7 cut(s) 119, 145, 217, 353, 413, 761, 1084
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 722, 758, 963, 1028
HpyF3I CTNAG 4 cut(s) 113, 696, 835, 855
HpySE526I ACGT 1 cut(s) 408
Hsp92II CATG 3 cut(s) 246, 307, 1040
HspAI GCGC 3 cut(s) 416, 479, 565
KroI GCCGGC 1 cut(s) 329
KroNI GCCGGC 1 cut(s) 331
Kzo9I GATC 6 cut(s) 180, 370, 459, 685, 736, 1102
LguI GCTCTTC 1 cut(s) 32
Lsp1109I GCAGC 2 cut(s) 245, 425
LweI GCATC 3 cut(s) 512, 826, 916
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 3 cut(s) 268, 657, 802
MalI GATC 6 cut(s) 182, 372, 461, 687, 738, 1104
MboI GATC 6 cut(s) 180, 370, 459, 685, 736, 1102
MboII GAAGA 7 cut(s) 19, 74, 77, 129, 1121, 1138, 1177
MfeI CAATTG 1 cut(s) 1085
MflI RGATCY 2 cut(s) 736, 1102
MhlI GDGCHC 3 cut(s) 496, 552, 727
MluI ACGCGT 1 cut(s) 434
MlyI GAGTC 2 cut(s) 401, 1142
MmeI TCCRAC 1 cut(s) 375
MnlI CCTC 8 cut(s) 90, 376, 377, 662, 913, 997, 1154, 1160
MroNI GCCGGC 1 cut(s) 329
MroXI GAANNNNTTC 1 cut(s) 165
MseI TTAA 6 cut(s) 561, 606, 702, 741, 813, 1173
MslI CAYNNNNRTG 2 cut(s) 46, 247
MspA1I CMGCKG 2 cut(s) 236, 377
MspCI CTTAAG 1 cut(s) 812
MspI CCGG 4 cut(s) 89, 320, 330, 403
MspR9I CCNGG 1 cut(s) 1060
MunI CAATTG 1 cut(s) 1085
MvaI CCWGG 1 cut(s) 1060
MvnI CGCG 2 cut(s) 418, 436
MwoI GCNNNNNNNGC 5 cut(s) 11, 722, 758, 963, 1028
NaeI GCCGGC 1 cut(s) 331
NdeI CATATG 1 cut(s) 847
NdeII GATC 6 cut(s) 180, 370, 459, 685, 736, 1102
NgoMIV GCCGGC 1 cut(s) 329
NlaIII CATG 3 cut(s) 246, 307, 1040
NlaIV GGNNCC 2 cut(s) 65, 347
NmuCI GTSAC 2 cut(s) 268, 657
NspI RCATGY 1 cut(s) 246
PciI ACATGT 1 cut(s) 242
PciSI GCTCTTC 1 cut(s) 32
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PdiI GCCGGC 1 cut(s) 331
PdmI GAANNNNTTC 1 cut(s) 165
Pfl23II CGTACG 1 cut(s) 437
PkrI GCNGC 4 cut(s) 13, 16, 235, 415
PleI GAGTC 2 cut(s) 400, 1141
PpsI GAGTC 2 cut(s) 400, 1141
PscI ACATGT 1 cut(s) 242
PshBI ATTAAT 1 cut(s) 606
PsiI TTATAA 2 cut(s) 512, 1010
Psp6I CCWGG 1 cut(s) 1058
PspGI CCWGG 1 cut(s) 1058
PspLI CGTACG 1 cut(s) 437
PspN4I GGNNCC 2 cut(s) 65, 347
PspPI GGNCC 2 cut(s) 91, 346
PstI CTGCAG 2 cut(s) 147, 219
PstNI CAGNNNCTG 1 cut(s) 236
PsuI RGATCY 2 cut(s) 736, 1102
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 6 cut(s) 149, 221, 407, 425, 439, 844
RsaNI GTAC 6 cut(s) 148, 220, 406, 424, 438, 843
RseI CAYNNNNRTG 2 cut(s) 46, 247
SapI GCTCTTC 1 cut(s) 32
SaqAI TTAA 6 cut(s) 561, 606, 702, 741, 813, 1173
SatI GCNGC 4 cut(s) 12, 15, 234, 414
Sau3AI GATC 6 cut(s) 180, 370, 459, 685, 736, 1102
Sau96I GGNCC 2 cut(s) 91, 346
ScaI AGTACT 1 cut(s) 149
SchI GAGTC 2 cut(s) 401, 1142
ScrFI CCNGG 1 cut(s) 1060
SduI GDGCHC 3 cut(s) 496, 552, 727
SfaNI GCATC 3 cut(s) 512, 826, 916
SfcI CTRYAG 2 cut(s) 143, 215
SinI GGWCC 1 cut(s) 346
SmiMI CAYNNNNRTG 2 cut(s) 46, 247
SmlI CTYRAG 1 cut(s) 812
SmoI CTYRAG 1 cut(s) 812
SsiI CCGC 6 cut(s) 11, 67, 275, 343, 375, 866
SspI AATATT 1 cut(s) 1014
StyD4I CCNGG 1 cut(s) 1058
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 6 cut(s) 152, 227, 423, 428, 502, 637
TaiI ACGT 1 cut(s) 411
TaqI TCGA 3 cut(s) 369, 552, 1152
TatI WGTACW 2 cut(s) 147, 842
TauI GCSGC 1 cut(s) 14
Tru1I TTAA 6 cut(s) 561, 606, 702, 741, 813, 1173
Tru9I TTAA 6 cut(s) 561, 606, 702, 741, 813, 1173
TscAI CASTG 3 cut(s) 121, 330, 718
TseFI GTSAC 2 cut(s) 268, 657
TseI GCWGC 3 cut(s) 14, 233, 413
Tsp45I GTSAC 2 cut(s) 268, 657
TspDTI ATGAA 7 cut(s) 577, 664, 820, 912, 924, 996, 1008
TspGWI ACGGA 3 cut(s) 338, 749, 1087
TspRI CASTG 3 cut(s) 121, 330, 718
Vha464I CTTAAG 1 cut(s) 812
VpaK11BI GGWCC 1 cut(s) 346
VspI ATTAAT 1 cut(s) 606
XapI RAATTY 4 cut(s) 19, 133, 254, 575
XceI RCATGY 1 cut(s) 246
XcmI CCANNNNNNNNNTGG 2 cut(s) 322, 847
XmnI GAANNNNTTC 1 cut(s) 165
ZrmI AGTACT 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.