Rh2AG397900

Protein of unknown function (DUF1517)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
59431714 .. 59435534
3821 bp
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UTR
Exon/CDS
Intron
Rh2AG397900.1

Sequence Viewer

Length: 657 bp
ATGTGGGCAACACGCCATAATCCATCAACTGTTGTCAAGGTTCAGCTCCAGGTTAATTTATCGAATGCTGGACGAGCACTCCAAACGGATCTTAATCGGATTGCTGAAACTGCAAATACTTCTACCTATACGGGTGTAAACAGTATTTTGACAGAGACAGCAGGAACTTTTCTCAGGCATCCTGATTGTTTCATCTCAGCCAGTTCATATGTGGCTGGGAAATATGGTAGGGATGGTGCACAAAATTACTTGGATCAACTATCTCTTGAAGAGAGGATTAAATTAAGCGAAAAGCCACTTGTCAATGTGAAGAACTTAAAAGCAGAAAGCTCAACAAGCCAAAAATCACCAAATGAAATCCAAGATGAATATATGGAGGTAAATGAGAATCAACTTGATATAAAAGCAGAAAGCTCAACAAGCCAAAAATCAGCAAATGAAATCCAAGATGAATATATGGAGGTAAATGACAACCAACTTGATATAAATGCGGAAAGCTCAACAAGCCAAAAATCAGCAAATGATATCCAAGATGGATGTATGAAGGTTATAATATTGGTGGCTGTTGTCGGGAAGCATGAGTTTCCCACCATCAATTCCTGGGATGACTTGAAGGAAGTTTTGCAAATGCTTACATCCATAGATCCTGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

218

Amino Acids

24.21

Weight (kDa)

4.61

Isoelectric Point (pI)

36.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 14 - 125 1.4e-20 Protein of unknown function (DUF1517)
DUF1517 PF07466 140 - 217 1.7e-06 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 551
AciI CCGC 1 cut(s) 491
AclWI GGATC 3 cut(s) 96, 261, 638
AgsI TTSAA 2 cut(s) 269, 613
AjnI CCWGG 2 cut(s) 48, 599
AluBI AGCT 4 cut(s) 46, 330, 414, 498
AluI AGCT 4 cut(s) 46, 330, 414, 498
Alw21I GWGCWC 2 cut(s) 79, 241
Alw26I GTCTC 1 cut(s) 149
Alw44I GTGCAC 1 cut(s) 237
AlwI GGATC 3 cut(s) 96, 261, 638
ApaLI GTGCAC 1 cut(s) 237
AsuHPI GGTGA 1 cut(s) 339
BaeGI GKGCMC 1 cut(s) 241
Bbv12I GWGCWC 2 cut(s) 79, 241
BccI CCATC 4 cut(s) 31, 227, 527, 599
BciT130I CCWGG 2 cut(s) 50, 601
BcoDI GTCTC 1 cut(s) 149
Bme1390I CCNGG 2 cut(s) 50, 601
BmrFI CCNGG 2 cut(s) 50, 601
BmsI GCATC 1 cut(s) 187
BpmI CTGGAG 1 cut(s) 32
BsaBI GATNNNNATC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 600
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bse1I ACTGG 1 cut(s) 201
Bse8I GATNNNNATC 1 cut(s) 93
BseBI CCWGG 2 cut(s) 50, 601
BseDI CCNNGG 1 cut(s) 600
BseGI GGATG 5 cut(s) 178, 238, 542, 610, 635
BseJI GATNNNNATC 1 cut(s) 93
BseMII CTCAG 2 cut(s) 187, 210
BseNI ACTGG 1 cut(s) 201
BseSI GKGCMC 1 cut(s) 241
BseYI CCCAGC 1 cut(s) 215
BsiHKAI GWGCWC 2 cut(s) 79, 241
BsmAI GTCTC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 70
Bsp1286I GDGCHC 2 cut(s) 79, 241
Bsp143I GATC 3 cut(s) 88, 253, 643
BspACI CCGC 1 cut(s) 491
BspCNI CTCAG 2 cut(s) 186, 209
BspPI GGATC 3 cut(s) 96, 261, 638
BsrI ACTGG 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 600
BssMI GATC 3 cut(s) 88, 253, 643
Bst2UI CCWGG 2 cut(s) 50, 601
Bst4CI ACNGT 2 cut(s) 31, 143
Bst6I CTCTTC 1 cut(s) 264
BstDEI CTNAG 2 cut(s) 173, 196
BstF5I GGATG 5 cut(s) 178, 238, 542, 610, 635
BstKTI GATC 3 cut(s) 91, 256, 646
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 3 cut(s) 88, 253, 643
BstMWI GCNNNNNNNGC 5 cut(s) 74, 110, 336, 420, 504
BstNI CCWGG 2 cut(s) 50, 601
BstSCI CCNGG 2 cut(s) 48, 599
BstSLI GKGCMC 1 cut(s) 241
BstX2I RGATCY 2 cut(s) 88, 643
BstYI RGATCY 2 cut(s) 88, 643
BtsCI GGATG 5 cut(s) 178, 238, 542, 610, 635
CviAII CATG 1 cut(s) 578
DdeI CTNAG 2 cut(s) 173, 196
DpnI GATC 3 cut(s) 90, 255, 645
DpnII GATC 3 cut(s) 88, 253, 643
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco32I GATATC 1 cut(s) 526
EcoRII CCWGG 2 cut(s) 48, 599
EcoRV GATATC 1 cut(s) 526
FaeI CATG 1 cut(s) 581
FatI CATG 1 cut(s) 577
FauNDI CATATG 1 cut(s) 208
FokI GGATG 5 cut(s) 165, 245, 549, 617, 622
GsaI CCCAGC 1 cut(s) 219
GsuI CTGGAG 1 cut(s) 32
Hin1II CATG 1 cut(s) 581
HinfI GANTC 1 cut(s) 388
HphI GGTGA 1 cut(s) 339
Hpy166II GTNNAC 2 cut(s) 139, 239
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 4 cut(s) 182, 266, 571, 647
Hpy8I GTNNAC 2 cut(s) 139, 239
HpyAV CCTTC 2 cut(s) 538, 607
HpyCH4III ACNGT 2 cut(s) 31, 143
HpyCH4V TGCA 3 cut(s) 113, 239, 625
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 110, 336, 420, 504
HpyF3I CTNAG 2 cut(s) 173, 196
Hsp92II CATG 1 cut(s) 581
Kzo9I GATC 3 cut(s) 88, 253, 643
LmnI GCTCC 1 cut(s) 51
LweI GCATC 1 cut(s) 187
MalI GATC 3 cut(s) 90, 255, 645
MboI GATC 3 cut(s) 88, 253, 643
MboII GAAGA 2 cut(s) 281, 322
MflI RGATCY 2 cut(s) 88, 643
MhlI GDGCHC 2 cut(s) 79, 241
MluCI AATT 4 cut(s) 55, 244, 281, 595
MnlI CCTC 3 cut(s) 267, 370, 454
MseI TTAA 5 cut(s) 54, 93, 279, 284, 317
MspR9I CCNGG 2 cut(s) 50, 601
Mva1269I GAATGC 1 cut(s) 70
MvaI CCWGG 2 cut(s) 50, 601
MwoI GCNNNNNNNGC 5 cut(s) 74, 110, 336, 420, 504
NdeI CATATG 1 cut(s) 208
NdeII GATC 3 cut(s) 88, 253, 643
NlaIII CATG 1 cut(s) 581
PctI GAATGC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 388
PsiI TTATAA 1 cut(s) 551
Psp6I CCWGG 2 cut(s) 48, 599
PspFI CCCAGC 1 cut(s) 215
PspGI CCWGG 2 cut(s) 48, 599
PsuI RGATCY 2 cut(s) 88, 643
SaqAI TTAA 5 cut(s) 54, 93, 279, 284, 317
Sau3AI GATC 3 cut(s) 88, 253, 643
ScrFI CCNGG 2 cut(s) 50, 601
SduI GDGCHC 2 cut(s) 79, 241
SfaNI GCATC 1 cut(s) 187
Sse9I AATT 4 cut(s) 55, 244, 281, 595
SsiI CCGC 1 cut(s) 491
SspI AATATT 1 cut(s) 555
StyD4I CCNGG 2 cut(s) 48, 599
TaaI ACNGT 2 cut(s) 31, 143
TaqI TCGA 1 cut(s) 62
TasI AATT 4 cut(s) 55, 244, 281, 595
TfiI GAWTC 1 cut(s) 388
Tru1I TTAA 5 cut(s) 54, 93, 279, 284, 317
Tru9I TTAA 5 cut(s) 54, 93, 279, 284, 317
TspDTI ATGAA 7 cut(s) 181, 195, 369, 381, 453, 465, 557
TspGWI ACGGA 1 cut(s) 101
VneI GTGCAC 1 cut(s) 237
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.