Rh2AG404400

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0014649
Physical Location & Seq
Forward (+)
60235984 .. 60239830
3847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG404400.1

Sequence Viewer

Length: 1209 bp
ATGGCAACGGCGGCTACTAATCTGCTCCTCCAAACAAACCCATTGAGGTGGAAGCAATGCTACCCAAATCTGTTCCGCCCCCTTCGTCCTCTCTCGGCCCAACCAGTCAAGCTTAGTGCAACCTTCAACCAAATTAAGCTTCAATTCTTGGAGAAGAGCCGCTTAATCGCAACCAACCCGAGATCAAAATCAGCGGCCGAATCTCTGCAGTACCGTCCAGCAGAAAACCCTGTCGTCAATAAACTATGGAAACCCGTGACCACCGCGGCTGTGCTTTTGGGTGTGTTGTTGCTCATGTACAGACCCAAACCGGCACTGGCTTCCTCTGTTGGGCGGGTCCGTGCAACCTGCTCGCCCTACGATTCCGAAGCTGATACGGAGTCGCTGCTCCGGTACATTGACGCGCGAGACTATAGTATGTCGCGTACGAGTGTGGATACTATGGAGTGGGTGTTATATCCTTATGCGCTATACTATGGGGCACTTGCTGCGCTATTCGTAATGTGCCGATTGCTAAAATGTCTCGACCCTTCTGTGCTCGAATGGTTTAAGCGCCAAGTCAAATTCTTATTCTTGATCGTTATTATTCATCGTATGTGGGCAACACGCCATAATCCATCAACTGTTGTCAAGCTTCAGCTCCAGGTTAATTTATCGAATGCTGGACGAGCACTCCAAACGGATCTTAATCGGATTGCTGAAACTGCAAATACTTCTACCTATACGGGTGTAAACAGTATTTTGACTGAGACAGCAGGAACTTTTCTCAGGCATCCTGATTGTTTCATCTCAGCCAGTTCATATGTGGCTGGGAAATATGGTAGGGATGGTGCACAAAATTACTTGGATCAACTATCTCTTGAAGAGAGGATTAAATTAAGCGAAAAGCCACTTGTCAATGTGAAGAACTTAAAAGCAGAAAGTTCAACAAGCCAAAAATCAGCAAATGAAATCCAAGATGAATATATGGAGGTAAATGAGAATCAACTTGATATAAAAGCAGAAAGCTCAACAAGCCAAAAATCAGCAAATGAAATCCAAGATGAATATATGGAGGTAAATGACAACCAACTTGATATAAATGCGGAAAGCTCAACAAGCCAAAAATCAGCAAATGATATCCAAGATGGATGTATGAAGGTAAATGCCAATCAACTCGATATTAGCAAATTGTATATTAGCAACTTGATATCTATGGCCTGTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

402

Amino Acids

45.15

Weight (kDa)

8.52

Isoelectric Point (pI)

40.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 212 - 323 9.8e-20 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 356
AccII CGCG 4 cut(s) 266, 404, 406, 424
AciI CCGC 8 cut(s) 11, 76, 160, 194, 264, 266, 334, 1085
AclWI GGATC 2 cut(s) 690, 855
AcoI YGGCCR 1 cut(s) 195
AcsI RAATTY 1 cut(s) 563
AcuI CTGAAG 1 cut(s) 620
AfaI GTAC 4 cut(s) 212, 299, 395, 427
AfiI CCNNNNNNNGG 1 cut(s) 330
AgsI TTSAA 4 cut(s) 127, 143, 863, 927
AjnI CCWGG 1 cut(s) 642
AjuI GAANNNNNNNTTGG 2 cut(s) 123, 155
AluBI AGCT 7 cut(s) 112, 139, 371, 634, 640, 1008, 1092
AluI AGCT 7 cut(s) 112, 139, 371, 634, 640, 1008, 1092
Alw21I GWGCWC 3 cut(s) 540, 673, 835
Alw26I GTCTC 3 cut(s) 402, 527, 743
Alw44I GTGCAC 1 cut(s) 831
AlwI GGATC 2 cut(s) 690, 855
Ama87I CYCGRG 1 cut(s) 178
AoxI GGCC 3 cut(s) 96, 195, 1197
ApaLI GTGCAC 1 cut(s) 831
ApeKI GCWGC 2 cut(s) 385, 488
ApoI RAATTY 1 cut(s) 563
AspLEI GCGC 4 cut(s) 406, 469, 493, 555
AspS9I GGNCC 2 cut(s) 97, 337
AvaI CYCGRG 1 cut(s) 178
AvaII GGWCC 1 cut(s) 337
BaeGI GKGCMC 2 cut(s) 484, 835
BarI GAAGNNNNNNTAC 2 cut(s) 44, 76
Bbv12I GWGCWC 3 cut(s) 540, 673, 835
BbvI GCAGC 2 cut(s) 372, 475
BccI CCATC 3 cut(s) 625, 821, 1121
BceAI ACGGC 1 cut(s) 24
BcgI CGANNNNNNTGC 2 cut(s) 333, 367
BciT130I CCWGG 1 cut(s) 644
BciVI GTATCC 1 cut(s) 430
BcoDI GTCTC 3 cut(s) 402, 527, 743
BfmI CTRYAG 2 cut(s) 206, 412
BfoI RGCGCY 1 cut(s) 556
BfuAI ACCTGC 1 cut(s) 356
BfuI GTATCC 1 cut(s) 430
BisI GCNGC 6 cut(s) 12, 160, 195, 267, 386, 489
BlsI GCNGC 6 cut(s) 13, 161, 196, 268, 387, 490
Bme1390I CCNGG 1 cut(s) 644
Bme18I GGWCC 1 cut(s) 337
BmeT110I CYCGRG 1 cut(s) 178
BmgT120I GGNCC 2 cut(s) 97, 337
BmiI GGNNCC 1 cut(s) 338
BmrFI CCNGG 1 cut(s) 644
BmsI GCATC 1 cut(s) 781
BpmI CTGGAG 1 cut(s) 626
BsaBI GATNNNNATC 2 cut(s) 187, 687
BsaJI CCNNGG 1 cut(s) 264
BsaWI WCCGGW 1 cut(s) 390
BsaXI ACNNNNNCTCC 4 cut(s) 437, 467, 657, 687
Bsc4I CCNNNNNNNGG 1 cut(s) 330
Bse118I RCCGGY 1 cut(s) 310
Bse1I ACTGG 3 cut(s) 104, 321, 795
Bse3DI GCAATG 1 cut(s) 62
Bse8I GATNNNNATC 2 cut(s) 187, 687
BseBI CCWGG 1 cut(s) 644
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 3 cut(s) 772, 832, 1136
BseJI GATNNNNATC 2 cut(s) 187, 687
BseLI CCNNNNNNNGG 1 cut(s) 330
BseMI GCAATG 1 cut(s) 62
BseMII CTCAG 3 cut(s) 738, 781, 804
BseNI ACTGG 3 cut(s) 104, 321, 795
BseRI GAGGAG 1 cut(s) 17
BseSI GKGCMC 2 cut(s) 484, 835
BseX3I CGGCCG 1 cut(s) 195
BseXI GCAGC 2 cut(s) 372, 475
BseYI CCCAGC 1 cut(s) 809
Bsh1236I CGCG 4 cut(s) 266, 404, 406, 424
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 3 cut(s) 98, 197, 1199
BsiEI CGRYCG 1 cut(s) 198
BsiHKAI GWGCWC 3 cut(s) 540, 673, 835
BsiHKCI CYCGRG 1 cut(s) 178
BsiSI CCGG 2 cut(s) 311, 391
BsiWI CGTACG 1 cut(s) 425
BslI CCNNNNNNNGG 1 cut(s) 330
BsmAI GTCTC 3 cut(s) 402, 527, 743
BsmI GAATGC 1 cut(s) 664
BsnI GGCC 3 cut(s) 98, 197, 1199
BsoBI CYCGRG 1 cut(s) 178
Bsp1286I GDGCHC 4 cut(s) 484, 540, 673, 835
Bsp1407I TGTACA 1 cut(s) 297
Bsp143I GATC 4 cut(s) 182, 576, 682, 847
BspACI CCGC 8 cut(s) 11, 76, 160, 194, 264, 266, 334, 1085
BspANI GGCC 3 cut(s) 98, 197, 1199
BspCNI CTCAG 3 cut(s) 739, 780, 803
BspFNI CGCG 4 cut(s) 266, 404, 406, 424
BspLI GGNNCC 1 cut(s) 338
BspMAI CTGCAG 1 cut(s) 210
BspMI ACCTGC 1 cut(s) 356
BspPI GGATC 2 cut(s) 690, 855
BspQI GCTCTTC 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 62
BsrFI RCCGGY 1 cut(s) 310
BsrGI TGTACA 1 cut(s) 297
BsrI ACTGG 3 cut(s) 104, 321, 795
BssAI RCCGGY 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 4 cut(s) 182, 576, 682, 847
Bst2UI CCWGG 1 cut(s) 644
Bst4CI ACNGT 3 cut(s) 215, 625, 737
Bst6I CTCTTC 2 cut(s) 149, 858
BstAPI GCANNNNNTGC 1 cut(s) 488
BstAUI TGTACA 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 353
BstDEI CTNAG 4 cut(s) 113, 747, 767, 790
BstDSI CCRYGG 1 cut(s) 264
BstF5I GGATG 3 cut(s) 772, 832, 1136
BstFNI CGCG 4 cut(s) 266, 404, 406, 424
BstH2I RGCGCY 1 cut(s) 556
BstHHI GCGC 4 cut(s) 406, 469, 493, 555
BstKTI GATC 4 cut(s) 185, 579, 685, 850
BstMAI GTCTC 3 cut(s) 402, 527, 743
BstMBI GATC 4 cut(s) 182, 576, 682, 847
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 6 cut(s) 11, 488, 668, 704, 1014, 1098
BstNI CCWGG 1 cut(s) 644
BstSCI CCNGG 1 cut(s) 642
BstSFI CTRYAG 2 cut(s) 206, 412
BstSLI GKGCMC 2 cut(s) 484, 835
BstUI CGCG 4 cut(s) 266, 404, 406, 424
BstV1I GCAGC 2 cut(s) 372, 475
BstX2I RGATCY 1 cut(s) 682
BstXI CCANNNNNNTGG 1 cut(s) 48
BstYI RGATCY 1 cut(s) 682
BstZI CGGCCG 1 cut(s) 195
BsuI GTATCC 1 cut(s) 430
BsuRI GGCC 3 cut(s) 98, 197, 1199
BtgI CCRYGG 1 cut(s) 264
BtsCI GGATG 3 cut(s) 772, 832, 1136
BtsIMutI CAGTG 1 cut(s) 314
BveI ACCTGC 1 cut(s) 356
Cac8I GCNNGC 1 cut(s) 353
CfoI GCGC 4 cut(s) 406, 469, 493, 555
Cfr10I RCCGGY 1 cut(s) 310
Cfr13I GGNCC 2 cut(s) 97, 337
Cfr42I CCGCGG 1 cut(s) 267
CseI GACGC 1 cut(s) 410
Csp6I GTAC 4 cut(s) 211, 298, 394, 426
CviAII CATG 1 cut(s) 295
CviQI GTAC 4 cut(s) 211, 298, 394, 426
DdeI CTNAG 4 cut(s) 113, 747, 767, 790
DpnI GATC 4 cut(s) 184, 578, 684, 849
DpnII GATC 4 cut(s) 182, 576, 682, 847
EaeI YGGCCR 1 cut(s) 195
EagI CGGCCG 1 cut(s) 195
Eam1104I CTCTTC 2 cut(s) 149, 858
EarI CTCTTC 2 cut(s) 149, 858
EciI GGCGGA 1 cut(s) 65
EclXI CGGCCG 1 cut(s) 195
Eco32I GATATC 2 cut(s) 1120, 1191
Eco47I GGWCC 1 cut(s) 337
Eco52I CGGCCG 1 cut(s) 195
Eco57I CTGAAG 1 cut(s) 620
Eco88I CYCGRG 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 642
EcoRV GATATC 2 cut(s) 1120, 1191
FaeI CATG 1 cut(s) 298
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FatI CATG 1 cut(s) 294
FauI CCCGC 1 cut(s) 327
FauNDI CATATG 1 cut(s) 802
Fnu4HI GCNGC 6 cut(s) 12, 160, 195, 267, 386, 489
FokI GGATG 3 cut(s) 759, 839, 1143
Fsp4HI GCNGC 6 cut(s) 12, 160, 195, 267, 386, 489
GlaI GCGC 4 cut(s) 405, 468, 492, 554
GluI GCNGC 6 cut(s) 12, 160, 195, 267, 386, 489
GsaI CCCAGC 1 cut(s) 813
GsuI CTGGAG 1 cut(s) 626
HaeII RGCGCY 1 cut(s) 556
HaeIII GGCC 3 cut(s) 98, 197, 1199
HapII CCGG 2 cut(s) 311, 391
HgaI GACGC 1 cut(s) 410
HhaI GCGC 4 cut(s) 406, 469, 493, 555
Hin1II CATG 1 cut(s) 298
Hin6I GCGC 4 cut(s) 404, 467, 491, 553
HinP1I GCGC 4 cut(s) 404, 467, 491, 553
HindIII AAGCTT 3 cut(s) 110, 137, 632
HinfI GANTC 4 cut(s) 200, 362, 380, 982
HpaII CCGG 2 cut(s) 311, 391
Hpy166II GTNNAC 2 cut(s) 733, 833
Hpy188I TCNGA 2 cut(s) 367, 693
Hpy188III TCNNGA 4 cut(s) 524, 574, 776, 860
Hpy8I GTNNAC 2 cut(s) 733, 833
HpyAV CCTTC 4 cut(s) 92, 133, 540, 1132
HpyCH4III ACNGT 3 cut(s) 215, 625, 737
HpyCH4V TGCA 5 cut(s) 119, 208, 344, 707, 833
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 488, 668, 704, 1014, 1098
HpyF3I CTNAG 4 cut(s) 113, 747, 767, 790
Hsp92II CATG 1 cut(s) 298
HspAI GCGC 4 cut(s) 404, 467, 491, 553
KspI CCGCGG 1 cut(s) 267
Kzo9I GATC 4 cut(s) 182, 576, 682, 847
LguI GCTCTTC 1 cut(s) 149
LmnI GCTCC 3 cut(s) 30, 393, 645
Lsp1109I GCAGC 2 cut(s) 372, 475
LweI GCATC 1 cut(s) 781
MaeIII GTNAC 1 cut(s) 256
MalI GATC 4 cut(s) 184, 578, 684, 849
MboI GATC 4 cut(s) 182, 576, 682, 847
MboII GAAGA 3 cut(s) 166, 875, 916
MflI RGATCY 1 cut(s) 682
MhlI GDGCHC 4 cut(s) 484, 540, 673, 835
MluCI AATT 7 cut(s) 132, 143, 563, 649, 838, 875, 1169
MlyI GAGTC 1 cut(s) 389
MnlI CCTC 7 cut(s) 38, 39, 99, 334, 861, 964, 1048
MseI TTAA 8 cut(s) 135, 164, 549, 648, 687, 873, 878, 911
MslI CAYNNNNRTG 1 cut(s) 46
MspA1I CMGCKG 2 cut(s) 194, 266
MspI CCGG 2 cut(s) 311, 391
MspR9I CCNGG 1 cut(s) 644
Mva1269I GAATGC 1 cut(s) 664
MvaI CCWGG 1 cut(s) 644
MvnI CGCG 4 cut(s) 266, 404, 406, 424
MwoI GCNNNNNNNGC 6 cut(s) 11, 488, 668, 704, 1014, 1098
NdeI CATATG 1 cut(s) 802
NdeII GATC 4 cut(s) 182, 576, 682, 847
NlaIII CATG 1 cut(s) 298
NlaIV GGNNCC 1 cut(s) 338
NmeAIII GCCGAG 1 cut(s) 74
NmuCI GTSAC 1 cut(s) 256
PciSI GCTCTTC 1 cut(s) 149
PctI GAATGC 1 cut(s) 664
PfeI GAWTC 3 cut(s) 200, 362, 982
Pfl23II CGTACG 1 cut(s) 425
PkrI GCNGC 6 cut(s) 13, 161, 196, 268, 387, 490
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
Psp6I CCWGG 1 cut(s) 642
PspFI CCCAGC 1 cut(s) 809
PspGI CCWGG 1 cut(s) 642
PspLI CGTACG 1 cut(s) 425
PspN4I GGNNCC 1 cut(s) 338
PspPI GGNCC 2 cut(s) 97, 337
PstI CTGCAG 1 cut(s) 210
PsuI RGATCY 1 cut(s) 682
RsaI GTAC 4 cut(s) 212, 299, 395, 427
RsaNI GTAC 4 cut(s) 211, 298, 394, 426
RseI CAYNNNNRTG 1 cut(s) 46
SacII CCGCGG 1 cut(s) 267
SapI GCTCTTC 1 cut(s) 149
SaqAI TTAA 8 cut(s) 135, 164, 549, 648, 687, 873, 878, 911
SatI GCNGC 6 cut(s) 12, 160, 195, 267, 386, 489
Sau3AI GATC 4 cut(s) 182, 576, 682, 847
Sau96I GGNCC 2 cut(s) 97, 337
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 1 cut(s) 644
SduI GDGCHC 4 cut(s) 484, 540, 673, 835
SfaNI GCATC 1 cut(s) 781
SfcI CTRYAG 2 cut(s) 206, 412
Sfr303I CCGCGG 1 cut(s) 267
SgrBI CCGCGG 1 cut(s) 267
SinI GGWCC 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 46
Sse9I AATT 7 cut(s) 132, 143, 563, 649, 838, 875, 1169
SsiI CCGC 8 cut(s) 11, 76, 160, 194, 264, 266, 334, 1085
StyD4I CCNGG 1 cut(s) 642
TaaI ACNGT 3 cut(s) 215, 625, 737
TaqI TCGA 4 cut(s) 525, 540, 656, 1158
TasI AATT 7 cut(s) 132, 143, 563, 649, 838, 875, 1169
TatI WGTACW 1 cut(s) 297
TauI GCSGC 4 cut(s) 14, 162, 197, 269
TfiI GAWTC 3 cut(s) 200, 362, 982
Tru1I TTAA 8 cut(s) 135, 164, 549, 648, 687, 873, 878, 911
Tru9I TTAA 8 cut(s) 135, 164, 549, 648, 687, 873, 878, 911
TscAI CASTG 1 cut(s) 321
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 2 cut(s) 385, 488
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 8 cut(s) 578, 775, 789, 963, 975, 1047, 1059, 1151
TspGWI ACGGA 3 cut(s) 329, 392, 695
TspRI CASTG 1 cut(s) 321
VneI GTGCAC 1 cut(s) 831
VpaK11BI GGWCC 1 cut(s) 337
XapI RAATTY 1 cut(s) 563
XcmI CCANNNNNNNNNTGG 2 cut(s) 313, 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.