Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0014649

Physical Location & Seq

Genomic Coordinates Forward (+)

61474615 .. 61478624

Gene Structure 4010 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG424100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGCAACGGCGGCTACTAATCTGCTCTTCCAAACAAACCCATTGAAGTGGAAGCAGTGCTACCCAAATCGGTTCCGCCTCCTCCGTCCTCTCTCGGCCCAACCAGTCAAGCTCAGTGCAACCTTCAACCAAATTAAGCTTCAATCCTTGGAGAAGAGCCGCTTGATCGCAACCAACCCGAAATCAAAATCAGCGGCCGAATATCTGCAGTACCGTCCAGCAGAAAACCCTGAAACATGTGTCGTCAATAAACTATGGAAATATGCTCGGAAACCCGTGACCACCGCGGCTGTGCTTTTGGGTGTGTTGTTGCTCATGTACAGACCCAAACCGGCACTGGCTTCCTCTGTTGGGCGGGTCCGTGCAACCTGCTCGCCCTACGATTCCGAAGCTGATACGGAGTCACTGCTCCGGTACATTGACGCGCGAGACTATAGTATGTCGCGTACGAGTGTGGATACTATGGAGTGGGTGTTATATCCTTATGCGCTATACTATGGGGCACTTGCTGCGCTATTCGTAATGTGCCGATTGCTAAAATGTCTCGACCCTTCTGTGCTCGAATGGTTTAAGCGCCAAGTCAAATTCTTATTCTTGATCGTTATTATTCATCGTATGTGGGCAACACGCCATAATCCATCAACTGTTGTCAAGCTTCAGCTCCAGGTTAATTTATCGAATGCTGGACGAGCACTCCAAACGGATCTTAATCGGATTGCTGAAACTGCAAATACTTCTACCTATACGGGTGTAAACAGTATTTTGACTGAGACAGCAGGAACTTTTCTCAGGCATCCTGATTGTTTCATCTCAGCCAGTTCATATGTGGCTGGGAAATATGGTAGGGATGGTGCACAAAATTACTTGGATCAACTATCTCTTGAAGAGAGGATTAAATTAAGCGAAAAGCCACTTGTCAATGTGAAGAACTTAAAAGCAGAAAGCTCAACAAGCCAAAAATCAGCAAATGAAATCCAAGATGAATATATGGAGGTAAATGAGAATCAACTTGATATAAAAGCAGAAAGCTCAACAAGCCAAAAATCAGCAAATGAAATCCAAGATGAATATATGGAGGTAAATGACAACCAACTTGATATAAATGCGGAAAGCTCAACAAGCCAAAAATCAGCAAATGATATCCAAGATGGATGTATGAAGGTTATAATATTGGTGGCTGTTGTCGGGAAGCATGAGTTTCCCACCATCAATTCCTGGGATGACTTGAAGGAAGTTTTGCAAATGCTTACATCCATAGATCCTGATGACGGTATATATGCATATGGAGTAGAAGTGTTGTGGAGTCCTCAATCCTCTTCCTCATGGGGCTGGAGAAGATGGTTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1517

Protein Analysis

449

Amino Acids

50.8

Weight (kDa)

8.29

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1517	PF07466	219 - 329	1.1e-19	Protein of unknown function (DUF1517)
DUF1517	PF07466	346 - 439	3.4e-11	Protein of unknown function (DUF1517)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014649)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00810 FvH4_2g00810 FvH4_2g00810 FvH4_2g00810 FvH4_2g02770 FvH4_5g04910
rosa_laevigata	RLG00000019784
rosa_multiflora	Rmu_sc0006014.1_g000012
rosa_roxburghii	Rroxscaffold_1G00047270 Rroxscaffold_2G00105730
rosa_samantha	Rh2AG397800 Rh2AG397900 Rh2AG404400 Rh2CG384700 Rh2CG390300 Rh2DG424100
rosa_wichuraiana	Rw2G033030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1166
Acc36I	ACCTGC	1 cut(s)	377
AccII	CGCG	4 cut(s)	287, 425, 427, 445
AciI	CCGC	8 cut(s)	11, 76, 160, 194, 285, 287, 355, 1106
AclWI	GGATC	3 cut(s)	711, 876, 1253
AcoI	YGGCCR	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	584
AcuI	CTGAAG	1 cut(s)	641
AfaI	GTAC	4 cut(s)	212, 320, 416, 448
AfiI	CCNNNNNNNGG	2 cut(s)	351, 1268
AflIII	ACRYGT	1 cut(s)	236
AgsI	TTSAA	6 cut(s)	46, 127, 143, 884, 1228, 1345
AjnI	CCWGG	2 cut(s)	663, 1214
AjuI	GAANNNNNNNTTGG	2 cut(s)	123, 155
AluBI	AGCT	8 cut(s)	112, 139, 392, 655, 661, 945, 1029, 1113
AluI	AGCT	8 cut(s)	112, 139, 392, 655, 661, 945, 1029, 1113
Alw21I	GWGCWC	3 cut(s)	561, 694, 856
Alw26I	GTCTC	3 cut(s)	423, 548, 764
Alw44I	GTGCAC	1 cut(s)	852
AlwI	GGATC	3 cut(s)	711, 876, 1253
AoxI	GGCC	2 cut(s)	96, 195
ApaLI	GTGCAC	1 cut(s)	852
ApeKI	GCWGC	1 cut(s)	509
ApoI	RAATTY	1 cut(s)	584
AspLEI	GCGC	4 cut(s)	427, 490, 514, 576
AspS9I	GGNCC	2 cut(s)	97, 358
AvaII	GGWCC	1 cut(s)	358
BaeGI	GKGCMC	2 cut(s)	505, 856
BarI	GAAGNNNNNNTAC	2 cut(s)	44, 76
Bbv12I	GWGCWC	3 cut(s)	561, 694, 856
BbvI	GCAGC	1 cut(s)	496
BccI	CCATC	5 cut(s)	646, 842, 1142, 1214, 1332
BceAI	ACGGC	1 cut(s)	24
BcgI	CGANNNNNNTGC	2 cut(s)	354, 388
BciT130I	CCWGG	2 cut(s)	665, 1216
BciVI	GTATCC	1 cut(s)	451
BcoDI	GTCTC	3 cut(s)	423, 548, 764
BfmI	CTRYAG	2 cut(s)	206, 433
BfoI	RGCGCY	1 cut(s)	577
BfuAI	ACCTGC	1 cut(s)	377
BfuI	GTATCC	1 cut(s)	451
BisI	GCNGC	5 cut(s)	12, 160, 195, 288, 510
BlsI	GCNGC	5 cut(s)	13, 161, 196, 289, 511
Bme1390I	CCNGG	2 cut(s)	665, 1216
Bme18I	GGWCC	1 cut(s)	358
BmgT120I	GGNCC	2 cut(s)	97, 358
BmiI	GGNNCC	2 cut(s)	74, 359
BmrFI	CCNGG	2 cut(s)	665, 1216
BmsI	GCATC	1 cut(s)	802
BpmI	CTGGAG	1 cut(s)	647
BsaBI	GATNNNNATC	1 cut(s)	708
BsaJI	CCNNGG	3 cut(s)	147, 285, 1215
BsaWI	WCCGGW	1 cut(s)	411
BsaXI	ACNNNNNCTCC	6 cut(s)	458, 488, 678, 708, 1278, 1308
Bsc4I	CCNNNNNNNGG	2 cut(s)	351, 1268
Bse118I	RCCGGY	1 cut(s)	331
Bse1I	ACTGG	3 cut(s)	104, 342, 816
Bse8I	GATNNNNATC	1 cut(s)	708
BseBI	CCWGG	2 cut(s)	665, 1216
BseDI	CCNNGG	3 cut(s)	147, 285, 1215
BseGI	GGATG	5 cut(s)	793, 853, 1157, 1225, 1250
BseJI	GATNNNNATC	1 cut(s)	708
BseLI	CCNNNNNNNGG	2 cut(s)	351, 1268
BseMII	CTCAG	4 cut(s)	127, 759, 802, 825
BseNI	ACTGG	3 cut(s)	104, 342, 816
BseRI	GAGGAG	1 cut(s)	71
BseSI	GKGCMC	2 cut(s)	505, 856
BseX3I	CGGCCG	1 cut(s)	195
BseXI	GCAGC	1 cut(s)	496
BseYI	CCCAGC	1 cut(s)	830
Bsh1236I	CGCG	4 cut(s)	287, 425, 427, 445
Bsh1285I	CGRYCG	1 cut(s)	198
BshFI	GGCC	2 cut(s)	98, 197
BsiEI	CGRYCG	1 cut(s)	198
BsiHKAI	GWGCWC	3 cut(s)	561, 694, 856
BsiSI	CCGG	2 cut(s)	332, 412
BsiWI	CGTACG	1 cut(s)	446
BslI	CCNNNNNNNGG	2 cut(s)	351, 1268
BsmAI	GTCTC	3 cut(s)	423, 548, 764
BsmI	GAATGC	1 cut(s)	685
BsnI	GGCC	2 cut(s)	98, 197
Bsp1286I	GDGCHC	4 cut(s)	505, 561, 694, 856
Bsp1407I	TGTACA	1 cut(s)	318
Bsp143I	GATC	5 cut(s)	165, 597, 703, 868, 1258
BspACI	CCGC	8 cut(s)	11, 76, 160, 194, 285, 287, 355, 1106
BspANI	GGCC	2 cut(s)	98, 197
BspCNI	CTCAG	4 cut(s)	126, 760, 801, 824
BspFNI	CGCG	4 cut(s)	287, 425, 427, 445
BspLI	GGNNCC	2 cut(s)	74, 359
BspMAI	CTGCAG	1 cut(s)	210
BspMI	ACCTGC	1 cut(s)	377
BspPI	GGATC	3 cut(s)	711, 876, 1253
BspQI	GCTCTTC	2 cut(s)	32, 149
BsrFI	RCCGGY	1 cut(s)	331
BsrGI	TGTACA	1 cut(s)	318
BsrI	ACTGG	3 cut(s)	104, 342, 816
BssAI	RCCGGY	1 cut(s)	331
BssECI	CCNNGG	3 cut(s)	147, 285, 1215
BssMI	GATC	5 cut(s)	165, 597, 703, 868, 1258
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	2 cut(s)	665, 1216
Bst4CI	ACNGT	4 cut(s)	215, 646, 758, 1271
Bst6I	CTCTTC	4 cut(s)	32, 149, 879, 1321
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstAUI	TGTACA	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	374
BstDEI	CTNAG	4 cut(s)	113, 768, 788, 811
BstDSI	CCRYGG	1 cut(s)	285
BstF5I	GGATG	5 cut(s)	793, 853, 1157, 1225, 1250
BstFNI	CGCG	4 cut(s)	287, 425, 427, 445
BstH2I	RGCGCY	1 cut(s)	577
BstHHI	GCGC	4 cut(s)	427, 490, 514, 576
BstKTI	GATC	5 cut(s)	168, 600, 706, 871, 1261
BstMAI	GTCTC	3 cut(s)	423, 548, 764
BstMBI	GATC	5 cut(s)	165, 597, 703, 868, 1258
BstMCI	CGRYCG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 509, 689, 725, 951, 1035, 1119
BstNI	CCWGG	2 cut(s)	665, 1216
BstNSI	RCATGY	1 cut(s)	240
BstSCI	CCNGG	2 cut(s)	663, 1214
BstSFI	CTRYAG	2 cut(s)	206, 433
BstSLI	GKGCMC	2 cut(s)	505, 856
BstUI	CGCG	4 cut(s)	287, 425, 427, 445
BstV1I	GCAGC	1 cut(s)	496
BstX2I	RGATCY	2 cut(s)	703, 1258
BstXI	CCANNNNNNTGG	1 cut(s)	48
BstYI	RGATCY	2 cut(s)	703, 1258
BstZI	CGGCCG	1 cut(s)	195
BsuI	GTATCC	1 cut(s)	451
BsuRI	GGCC	2 cut(s)	98, 197
BtgI	CCRYGG	1 cut(s)	285
BtsCI	GGATG	5 cut(s)	793, 853, 1157, 1225, 1250
BtsI	GCAGTG	2 cut(s)	62, 404
BtsIMutI	CAGTG	4 cut(s)	62, 121, 335, 404
BveI	ACCTGC	1 cut(s)	377
Cac8I	GCNNGC	1 cut(s)	374
CfoI	GCGC	4 cut(s)	427, 490, 514, 576
Cfr10I	RCCGGY	1 cut(s)	331
Cfr13I	GGNCC	2 cut(s)	97, 358
Cfr42I	CCGCGG	1 cut(s)	288
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	4 cut(s)	211, 319, 415, 447
CviAII	CATG	4 cut(s)	237, 316, 1193, 1323
CviQI	GTAC	4 cut(s)	211, 319, 415, 447
DdeI	CTNAG	4 cut(s)	113, 768, 788, 811
DpnI	GATC	5 cut(s)	167, 599, 705, 870, 1260
DpnII	GATC	5 cut(s)	165, 597, 703, 868, 1258
EaeI	YGGCCR	1 cut(s)	195
EagI	CGGCCG	1 cut(s)	195
Eam1104I	CTCTTC	4 cut(s)	32, 149, 879, 1321
EarI	CTCTTC	4 cut(s)	32, 149, 879, 1321
EciI	GGCGGA	1 cut(s)	65
EclXI	CGGCCG	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	147
Eco32I	GATATC	1 cut(s)	1141
Eco47I	GGWCC	1 cut(s)	358
Eco52I	CGGCCG	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	641
EcoRII	CCWGG	2 cut(s)	663, 1214
EcoRV	GATATC	1 cut(s)	1141
EcoT14I	CCWWGG	1 cut(s)	147
EcoT22I	ATGCAT	1 cut(s)	1282
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	4 cut(s)	240, 319, 1196, 1326
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FatI	CATG	4 cut(s)	236, 315, 1192, 1322
FauI	CCCGC	1 cut(s)	348
FauNDI	CATATG	2 cut(s)	823, 1282
Fnu4HI	GCNGC	5 cut(s)	12, 160, 195, 288, 510
FokI	GGATG	5 cut(s)	780, 860, 1164, 1232, 1237
Fsp4HI	GCNGC	5 cut(s)	12, 160, 195, 288, 510
GlaI	GCGC	4 cut(s)	426, 489, 513, 575
GluI	GCNGC	5 cut(s)	12, 160, 195, 288, 510
GsaI	CCCAGC	1 cut(s)	834
GsuI	CTGGAG	1 cut(s)	647
HaeII	RGCGCY	1 cut(s)	577
HaeIII	GGCC	2 cut(s)	98, 197
HapII	CCGG	2 cut(s)	332, 412
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	4 cut(s)	427, 490, 514, 576
Hin1II	CATG	4 cut(s)	240, 319, 1196, 1326
Hin6I	GCGC	4 cut(s)	425, 488, 512, 574
HinP1I	GCGC	4 cut(s)	425, 488, 512, 574
HindIII	AAGCTT	2 cut(s)	137, 653
HinfI	GANTC	4 cut(s)	383, 401, 1003, 1303
HpaII	CCGG	2 cut(s)	332, 412
Hpy166II	GTNNAC	2 cut(s)	754, 854
Hpy188I	TCNGA	3 cut(s)	270, 388, 714
Hpy188III	TCNNGA	6 cut(s)	545, 595, 797, 881, 1186, 1262
Hpy8I	GTNNAC	2 cut(s)	754, 854
HpyAV	CCTTC	4 cut(s)	133, 561, 1153, 1222
HpyCH4III	ACNGT	4 cut(s)	215, 646, 758, 1271
HpyCH4V	TGCA	7 cut(s)	119, 208, 365, 728, 854, 1240, 1280
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 509, 689, 725, 951, 1035, 1119
HpyF3I	CTNAG	4 cut(s)	113, 768, 788, 811
Hsp92II	CATG	4 cut(s)	240, 319, 1196, 1326
HspAI	GCGC	4 cut(s)	425, 488, 512, 574
KspI	CCGCGG	1 cut(s)	288
Kzo9I	GATC	5 cut(s)	165, 597, 703, 868, 1258
LguI	GCTCTTC	2 cut(s)	32, 149
LmnI	GCTCC	2 cut(s)	414, 666
Lsp1109I	GCAGC	1 cut(s)	496
LweI	GCATC	1 cut(s)	802
MaeIII	GTNAC	2 cut(s)	277, 402
MalI	GATC	5 cut(s)	167, 599, 705, 870, 1260
MboI	GATC	5 cut(s)	165, 597, 703, 868, 1258
MboII	GAAGA	6 cut(s)	19, 166, 896, 937, 1308, 1347
MflI	RGATCY	2 cut(s)	703, 1258
MhlI	GDGCHC	4 cut(s)	505, 561, 694, 856
MluCI	AATT	6 cut(s)	132, 584, 670, 859, 896, 1210
MlyI	GAGTC	2 cut(s)	410, 1312
Mph1103I	ATGCAT	1 cut(s)	1282
MseI	TTAA	7 cut(s)	135, 570, 669, 708, 894, 899, 932
MslI	CAYNNNNRTG	1 cut(s)	46
MspA1I	CMGCKG	2 cut(s)	194, 287
MspI	CCGG	2 cut(s)	332, 412
MspR9I	CCNGG	2 cut(s)	665, 1216
Mva1269I	GAATGC	1 cut(s)	685
MvaI	CCWGG	2 cut(s)	665, 1216
MvnI	CGCG	4 cut(s)	287, 425, 427, 445
MwoI	GCNNNNNNNGC	7 cut(s)	11, 509, 689, 725, 951, 1035, 1119
NdeI	CATATG	2 cut(s)	823, 1282
NdeII	GATC	5 cut(s)	165, 597, 703, 868, 1258
NlaIII	CATG	4 cut(s)	240, 319, 1196, 1326
NlaIV	GGNNCC	2 cut(s)	74, 359
NmeAIII	GCCGAG	1 cut(s)	74
NmuCI	GTSAC	2 cut(s)	277, 402
NsiI	ATGCAT	1 cut(s)	1282
NspI	RCATGY	1 cut(s)	240
PciI	ACATGT	1 cut(s)	236
PciSI	GCTCTTC	2 cut(s)	32, 149
PctI	GAATGC	1 cut(s)	685
PfeI	GAWTC	2 cut(s)	383, 1003
Pfl23II	CGTACG	1 cut(s)	446
PkrI	GCNGC	5 cut(s)	13, 161, 196, 289, 511
PleI	GAGTC	2 cut(s)	409, 1311
PpsI	GAGTC	2 cut(s)	409, 1311
PscI	ACATGT	1 cut(s)	236
PsiI	TTATAA	1 cut(s)	1166
Psp6I	CCWGG	2 cut(s)	663, 1214
PspFI	CCCAGC	1 cut(s)	830
PspGI	CCWGG	2 cut(s)	663, 1214
PspLI	CGTACG	1 cut(s)	446
PspN4I	GGNNCC	2 cut(s)	74, 359
PspPI	GGNCC	2 cut(s)	97, 358
PstI	CTGCAG	1 cut(s)	210
PsuI	RGATCY	2 cut(s)	703, 1258
RsaI	GTAC	4 cut(s)	212, 320, 416, 448
RsaNI	GTAC	4 cut(s)	211, 319, 415, 447
RseI	CAYNNNNRTG	1 cut(s)	46
SacII	CCGCGG	1 cut(s)	288
SapI	GCTCTTC	2 cut(s)	32, 149
SaqAI	TTAA	7 cut(s)	135, 570, 669, 708, 894, 899, 932
SatI	GCNGC	5 cut(s)	12, 160, 195, 288, 510
Sau3AI	GATC	5 cut(s)	165, 597, 703, 868, 1258
Sau96I	GGNCC	2 cut(s)	97, 358
SchI	GAGTC	2 cut(s)	410, 1312
ScrFI	CCNGG	2 cut(s)	665, 1216
SduI	GDGCHC	4 cut(s)	505, 561, 694, 856
SfaNI	GCATC	1 cut(s)	802
SfcI	CTRYAG	2 cut(s)	206, 433
Sfr303I	CCGCGG	1 cut(s)	288
SgrBI	CCGCGG	1 cut(s)	288
SinI	GGWCC	1 cut(s)	358
SmiMI	CAYNNNNRTG	1 cut(s)	46
Sse9I	AATT	6 cut(s)	132, 584, 670, 859, 896, 1210
SsiI	CCGC	8 cut(s)	11, 76, 160, 194, 285, 287, 355, 1106
SspI	AATATT	1 cut(s)	1170
StyD4I	CCNGG	2 cut(s)	663, 1214
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	4 cut(s)	215, 646, 758, 1271
TaqI	TCGA	3 cut(s)	546, 561, 677
TasI	AATT	6 cut(s)	132, 584, 670, 859, 896, 1210
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	4 cut(s)	14, 162, 197, 290
TfiI	GAWTC	2 cut(s)	383, 1003
Tru1I	TTAA	7 cut(s)	135, 570, 669, 708, 894, 899, 932
Tru9I	TTAA	7 cut(s)	135, 570, 669, 708, 894, 899, 932
TscAI	CASTG	4 cut(s)	62, 121, 342, 411
TseFI	GTSAC	2 cut(s)	277, 402
TseI	GCWGC	1 cut(s)	509
Tsp45I	GTSAC	2 cut(s)	277, 402
TspDTI	ATGAA	8 cut(s)	599, 796, 810, 984, 996, 1068, 1080, 1172
TspGWI	ACGGA	4 cut(s)	74, 350, 413, 716
TspRI	CASTG	4 cut(s)	62, 121, 342, 411
VneI	GTGCAC	1 cut(s)	852
VpaK11BI	GGWCC	1 cut(s)	358
XapI	RAATTY	1 cut(s)	584
XceI	RCATGY	1 cut(s)	240
XcmI	CCANNNNNNNNNTGG	2 cut(s)	334, 823
Zsp2I	ATGCAT	1 cut(s)	1282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.