Rh2CG390300

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0014649
Physical Location & Seq
Forward (+)
53209850 .. 53212908
3059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG390300.1

Sequence Viewer

Length: 1170 bp
ATGGCAACGGCGGCTACTAATCTGCTCCTCCAAACAAACCCATTGAGGTGGAAGCAATGCTACCCAAATCTGTTCCGCCCCCTTCGTCCTCTCTCGGCCCAACCAGTCAAGCTTAGTGCAACCTTCAACCAAATTAAGCTTCAATTCTTGGAGAAGAGCCGCTTAATCGCAACCAACCCGAGATCAAAATCAGCGGCCGAATCTCTGCAGTACCGTCCAGCAGAAAACCCTGTCGTCAATAAACTATGGAAACCCGTGACCACCGCGGCTGTGCTTTTGGGTGTGTTGTTGCTCATGTACAGACCCAAACCGGCACTGGCTTCCTCTGTTGGGCGGGTCCGTGCAACCTGCTCGCCCTACGATTCCGAAGCTGATACGGAGTCGCTGCTCCGGTACATTGACGCGCGAGACTATAGTATGTCGCGTACGAGTGTGGATACTATGGAGTGGGTGTTATATCCTTATGCGCTATACTATGGGGCACTTGCTGCGCTATTCGTAATGTGCCGATTGCTAAAATGTCTCGACCCTTCTGTGCTCGAATGGTTTAAGCGCCAAGTCAAATTCTTATTCTTGATCGTTATTATTCATCGTATGTGGGCAACACGCCATAATCCATCAACTGTTGTCAAGCTTCAGCTCCAGGTGGCTGGGAAATATGGTAGGGATGGTGCACAAAATTACTTGGATCAACTATCTCTTGAAGAGAGGATTAAATTAAGCGAAAAGCCACTTGTCAATGTGAAGAACTTAAAAGCAGAAAGTTCAACAAGCCAAAAATCAGCAAATGAAATCCAAGATGAATATATGGAGGTAAATGAGAATCAACTTGATATAAAAGCAGAAAGCTCAACAAGCCAAAAATCAGCAAATGAAATCCAAGATGAATATATGGAGGTAAATGACAACCAACTTGATATAAATGCGGAAAGCTCAACAAGCCAAAAATCAGCAAATGATATCCAAGATGGATGTATGAAGGTTATAATATTGGTGGCTGTTGTCGGGAAGCATGAGTTTCCCACCATCAATTCCTGGGATGACTTGAAGGAAGTTTTGCAAATGCTTACATCCATAGATCCTGATGACGGTATATATGCATATGGAGTAGAAGTGTTGTGGAGTCCTCAATCCTCTTCCTCATGGGGCTGGAGAAGATGGTTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

389

Amino Acids

44.25

Weight (kDa)

8.11

Isoelectric Point (pI)

46.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 286 - 379 2.9e-11 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 986
Acc36I ACCTGC 1 cut(s) 356
AccII CGCG 4 cut(s) 266, 404, 406, 424
AciI CCGC 8 cut(s) 11, 76, 160, 194, 264, 266, 334, 926
AclWI GGATC 2 cut(s) 696, 1073
AcoI YGGCCR 1 cut(s) 195
AcsI RAATTY 1 cut(s) 563
AcuI CTGAAG 1 cut(s) 620
AfaI GTAC 4 cut(s) 212, 299, 395, 427
AfiI CCNNNNNNNGG 2 cut(s) 330, 1088
AgsI TTSAA 6 cut(s) 127, 143, 704, 768, 1048, 1165
AjnI CCWGG 2 cut(s) 642, 1034
AjuI GAANNNNNNNTTGG 2 cut(s) 123, 155
AluBI AGCT 7 cut(s) 112, 139, 371, 634, 640, 849, 933
AluI AGCT 7 cut(s) 112, 139, 371, 634, 640, 849, 933
Alw21I GWGCWC 2 cut(s) 540, 676
Alw26I GTCTC 2 cut(s) 402, 527
Alw44I GTGCAC 1 cut(s) 672
AlwI GGATC 2 cut(s) 696, 1073
Ama87I CYCGRG 1 cut(s) 178
AoxI GGCC 2 cut(s) 96, 195
ApaLI GTGCAC 1 cut(s) 672
ApeKI GCWGC 2 cut(s) 385, 488
ApoI RAATTY 1 cut(s) 563
AspLEI GCGC 4 cut(s) 406, 469, 493, 555
AspS9I GGNCC 2 cut(s) 97, 337
AvaI CYCGRG 1 cut(s) 178
AvaII GGWCC 1 cut(s) 337
BaeGI GKGCMC 2 cut(s) 484, 676
BarI GAAGNNNNNNTAC 2 cut(s) 44, 76
Bbv12I GWGCWC 2 cut(s) 540, 676
BbvI GCAGC 2 cut(s) 372, 475
BccI CCATC 5 cut(s) 625, 662, 962, 1034, 1152
BceAI ACGGC 1 cut(s) 24
BcgI CGANNNNNNTGC 2 cut(s) 333, 367
BciT130I CCWGG 2 cut(s) 644, 1036
BciVI GTATCC 1 cut(s) 430
BcoDI GTCTC 2 cut(s) 402, 527
BfmI CTRYAG 2 cut(s) 206, 412
BfoI RGCGCY 1 cut(s) 556
BfuAI ACCTGC 1 cut(s) 356
BfuI GTATCC 1 cut(s) 430
BisI GCNGC 6 cut(s) 12, 160, 195, 267, 386, 489
BlsI GCNGC 6 cut(s) 13, 161, 196, 268, 387, 490
Bme1390I CCNGG 2 cut(s) 644, 1036
Bme18I GGWCC 1 cut(s) 337
BmeT110I CYCGRG 1 cut(s) 178
BmgT120I GGNCC 2 cut(s) 97, 337
BmiI GGNNCC 1 cut(s) 338
BmrFI CCNGG 2 cut(s) 644, 1036
BpmI CTGGAG 1 cut(s) 626
BsaBI GATNNNNATC 1 cut(s) 187
BsaJI CCNNGG 2 cut(s) 264, 1035
BsaWI WCCGGW 1 cut(s) 390
BsaXI ACNNNNNCTCC 4 cut(s) 437, 467, 1098, 1128
Bsc4I CCNNNNNNNGG 2 cut(s) 330, 1088
Bse118I RCCGGY 1 cut(s) 310
Bse1I ACTGG 2 cut(s) 104, 321
Bse3DI GCAATG 1 cut(s) 62
Bse8I GATNNNNATC 1 cut(s) 187
BseBI CCWGG 2 cut(s) 644, 1036
BseDI CCNNGG 2 cut(s) 264, 1035
BseGI GGATG 4 cut(s) 673, 977, 1045, 1070
BseJI GATNNNNATC 1 cut(s) 187
BseLI CCNNNNNNNGG 2 cut(s) 330, 1088
BseMI GCAATG 1 cut(s) 62
BseNI ACTGG 2 cut(s) 104, 321
BseRI GAGGAG 1 cut(s) 17
BseSI GKGCMC 2 cut(s) 484, 676
BseX3I CGGCCG 1 cut(s) 195
BseXI GCAGC 2 cut(s) 372, 475
BseYI CCCAGC 1 cut(s) 650
Bsh1236I CGCG 4 cut(s) 266, 404, 406, 424
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 2 cut(s) 98, 197
BsiEI CGRYCG 1 cut(s) 198
BsiHKAI GWGCWC 2 cut(s) 540, 676
BsiHKCI CYCGRG 1 cut(s) 178
BsiSI CCGG 2 cut(s) 311, 391
BsiWI CGTACG 1 cut(s) 425
BslI CCNNNNNNNGG 2 cut(s) 330, 1088
BsmAI GTCTC 2 cut(s) 402, 527
BsnI GGCC 2 cut(s) 98, 197
BsoBI CYCGRG 1 cut(s) 178
Bsp1286I GDGCHC 3 cut(s) 484, 540, 676
Bsp1407I TGTACA 1 cut(s) 297
Bsp143I GATC 4 cut(s) 182, 576, 688, 1078
BspACI CCGC 8 cut(s) 11, 76, 160, 194, 264, 266, 334, 926
BspANI GGCC 2 cut(s) 98, 197
BspFNI CGCG 4 cut(s) 266, 404, 406, 424
BspLI GGNNCC 1 cut(s) 338
BspMAI CTGCAG 1 cut(s) 210
BspMI ACCTGC 1 cut(s) 356
BspPI GGATC 2 cut(s) 696, 1073
BspQI GCTCTTC 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 62
BsrFI RCCGGY 1 cut(s) 310
BsrGI TGTACA 1 cut(s) 297
BsrI ACTGG 2 cut(s) 104, 321
BssAI RCCGGY 1 cut(s) 310
BssECI CCNNGG 2 cut(s) 264, 1035
BssMI GATC 4 cut(s) 182, 576, 688, 1078
Bst2UI CCWGG 2 cut(s) 644, 1036
Bst4CI ACNGT 3 cut(s) 215, 625, 1091
Bst6I CTCTTC 3 cut(s) 149, 699, 1141
BstAPI GCANNNNNTGC 1 cut(s) 488
BstAUI TGTACA 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 353
BstDEI CTNAG 1 cut(s) 113
BstDSI CCRYGG 1 cut(s) 264
BstF5I GGATG 4 cut(s) 673, 977, 1045, 1070
BstFNI CGCG 4 cut(s) 266, 404, 406, 424
BstH2I RGCGCY 1 cut(s) 556
BstHHI GCGC 4 cut(s) 406, 469, 493, 555
BstKTI GATC 4 cut(s) 185, 579, 691, 1081
BstMAI GTCTC 2 cut(s) 402, 527
BstMBI GATC 4 cut(s) 182, 576, 688, 1078
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 4 cut(s) 11, 488, 855, 939
BstNI CCWGG 2 cut(s) 644, 1036
BstSCI CCNGG 2 cut(s) 642, 1034
BstSFI CTRYAG 2 cut(s) 206, 412
BstSLI GKGCMC 2 cut(s) 484, 676
BstUI CGCG 4 cut(s) 266, 404, 406, 424
BstV1I GCAGC 2 cut(s) 372, 475
BstX2I RGATCY 1 cut(s) 1078
BstXI CCANNNNNNTGG 2 cut(s) 48, 650
BstYI RGATCY 1 cut(s) 1078
BstZI CGGCCG 1 cut(s) 195
BsuI GTATCC 1 cut(s) 430
BsuRI GGCC 2 cut(s) 98, 197
BtgI CCRYGG 1 cut(s) 264
BtsCI GGATG 4 cut(s) 673, 977, 1045, 1070
BtsIMutI CAGTG 1 cut(s) 314
BveI ACCTGC 1 cut(s) 356
Cac8I GCNNGC 1 cut(s) 353
CfoI GCGC 4 cut(s) 406, 469, 493, 555
Cfr10I RCCGGY 1 cut(s) 310
Cfr13I GGNCC 2 cut(s) 97, 337
Cfr42I CCGCGG 1 cut(s) 267
CseI GACGC 1 cut(s) 410
Csp6I GTAC 4 cut(s) 211, 298, 394, 426
CviAII CATG 3 cut(s) 295, 1013, 1143
CviQI GTAC 4 cut(s) 211, 298, 394, 426
DdeI CTNAG 1 cut(s) 113
DpnI GATC 4 cut(s) 184, 578, 690, 1080
DpnII GATC 4 cut(s) 182, 576, 688, 1078
EaeI YGGCCR 1 cut(s) 195
EagI CGGCCG 1 cut(s) 195
Eam1104I CTCTTC 3 cut(s) 149, 699, 1141
EarI CTCTTC 3 cut(s) 149, 699, 1141
EciI GGCGGA 1 cut(s) 65
EclXI CGGCCG 1 cut(s) 195
Eco32I GATATC 1 cut(s) 961
Eco47I GGWCC 1 cut(s) 337
Eco52I CGGCCG 1 cut(s) 195
Eco57I CTGAAG 1 cut(s) 620
Eco88I CYCGRG 1 cut(s) 178
EcoRII CCWGG 2 cut(s) 642, 1034
EcoRV GATATC 1 cut(s) 961
EcoT22I ATGCAT 1 cut(s) 1102
FaeI CATG 3 cut(s) 298, 1016, 1146
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FatI CATG 3 cut(s) 294, 1012, 1142
FauI CCCGC 1 cut(s) 327
FauNDI CATATG 1 cut(s) 1102
Fnu4HI GCNGC 6 cut(s) 12, 160, 195, 267, 386, 489
FokI GGATG 4 cut(s) 680, 984, 1052, 1057
Fsp4HI GCNGC 6 cut(s) 12, 160, 195, 267, 386, 489
GlaI GCGC 4 cut(s) 405, 468, 492, 554
GluI GCNGC 6 cut(s) 12, 160, 195, 267, 386, 489
GsaI CCCAGC 1 cut(s) 654
GsuI CTGGAG 1 cut(s) 626
HaeII RGCGCY 1 cut(s) 556
HaeIII GGCC 2 cut(s) 98, 197
HapII CCGG 2 cut(s) 311, 391
HgaI GACGC 1 cut(s) 410
HhaI GCGC 4 cut(s) 406, 469, 493, 555
Hin1II CATG 3 cut(s) 298, 1016, 1146
Hin6I GCGC 4 cut(s) 404, 467, 491, 553
HinP1I GCGC 4 cut(s) 404, 467, 491, 553
HindIII AAGCTT 3 cut(s) 110, 137, 632
HinfI GANTC 5 cut(s) 200, 362, 380, 823, 1123
HpaII CCGG 2 cut(s) 311, 391
Hpy166II GTNNAC 1 cut(s) 674
Hpy188I TCNGA 1 cut(s) 367
Hpy188III TCNNGA 5 cut(s) 524, 574, 701, 1006, 1082
Hpy8I GTNNAC 1 cut(s) 674
HpyAV CCTTC 5 cut(s) 92, 133, 540, 973, 1042
HpyCH4III ACNGT 3 cut(s) 215, 625, 1091
HpyCH4V TGCA 6 cut(s) 119, 208, 344, 674, 1060, 1100
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 488, 855, 939
HpyF3I CTNAG 1 cut(s) 113
Hsp92II CATG 3 cut(s) 298, 1016, 1146
HspAI GCGC 4 cut(s) 404, 467, 491, 553
KspI CCGCGG 1 cut(s) 267
Kzo9I GATC 4 cut(s) 182, 576, 688, 1078
LguI GCTCTTC 1 cut(s) 149
LmnI GCTCC 3 cut(s) 30, 393, 645
Lsp1109I GCAGC 2 cut(s) 372, 475
MaeIII GTNAC 1 cut(s) 256
MalI GATC 4 cut(s) 184, 578, 690, 1080
MboI GATC 4 cut(s) 182, 576, 688, 1078
MboII GAAGA 5 cut(s) 166, 716, 757, 1128, 1167
MflI RGATCY 1 cut(s) 1078
MhlI GDGCHC 3 cut(s) 484, 540, 676
MluCI AATT 6 cut(s) 132, 143, 563, 679, 716, 1030
MlyI GAGTC 2 cut(s) 389, 1132
Mph1103I ATGCAT 1 cut(s) 1102
MseI TTAA 6 cut(s) 135, 164, 549, 714, 719, 752
MslI CAYNNNNRTG 1 cut(s) 46
MspA1I CMGCKG 2 cut(s) 194, 266
MspI CCGG 2 cut(s) 311, 391
MspR9I CCNGG 2 cut(s) 644, 1036
MvaI CCWGG 2 cut(s) 644, 1036
MvnI CGCG 4 cut(s) 266, 404, 406, 424
MwoI GCNNNNNNNGC 4 cut(s) 11, 488, 855, 939
NdeI CATATG 1 cut(s) 1102
NdeII GATC 4 cut(s) 182, 576, 688, 1078
NlaIII CATG 3 cut(s) 298, 1016, 1146
NlaIV GGNNCC 1 cut(s) 338
NmeAIII GCCGAG 1 cut(s) 74
NmuCI GTSAC 1 cut(s) 256
NsiI ATGCAT 1 cut(s) 1102
PciSI GCTCTTC 1 cut(s) 149
PfeI GAWTC 3 cut(s) 200, 362, 823
Pfl23II CGTACG 1 cut(s) 425
PkrI GCNGC 6 cut(s) 13, 161, 196, 268, 387, 490
PleI GAGTC 2 cut(s) 388, 1131
PpsI GAGTC 2 cut(s) 388, 1131
PsiI TTATAA 1 cut(s) 986
Psp6I CCWGG 2 cut(s) 642, 1034
PspFI CCCAGC 1 cut(s) 650
PspGI CCWGG 2 cut(s) 642, 1034
PspLI CGTACG 1 cut(s) 425
PspN4I GGNNCC 1 cut(s) 338
PspPI GGNCC 2 cut(s) 97, 337
PstI CTGCAG 1 cut(s) 210
PsuI RGATCY 1 cut(s) 1078
RsaI GTAC 4 cut(s) 212, 299, 395, 427
RsaNI GTAC 4 cut(s) 211, 298, 394, 426
RseI CAYNNNNRTG 1 cut(s) 46
SacII CCGCGG 1 cut(s) 267
SapI GCTCTTC 1 cut(s) 149
SaqAI TTAA 6 cut(s) 135, 164, 549, 714, 719, 752
SatI GCNGC 6 cut(s) 12, 160, 195, 267, 386, 489
Sau3AI GATC 4 cut(s) 182, 576, 688, 1078
Sau96I GGNCC 2 cut(s) 97, 337
SchI GAGTC 2 cut(s) 389, 1132
ScrFI CCNGG 2 cut(s) 644, 1036
SduI GDGCHC 3 cut(s) 484, 540, 676
SfcI CTRYAG 2 cut(s) 206, 412
Sfr303I CCGCGG 1 cut(s) 267
SgrBI CCGCGG 1 cut(s) 267
SinI GGWCC 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 46
Sse9I AATT 6 cut(s) 132, 143, 563, 679, 716, 1030
SsiI CCGC 8 cut(s) 11, 76, 160, 194, 264, 266, 334, 926
SspI AATATT 1 cut(s) 990
StyD4I CCNGG 2 cut(s) 642, 1034
TaaI ACNGT 3 cut(s) 215, 625, 1091
TaqI TCGA 2 cut(s) 525, 540
TasI AATT 6 cut(s) 132, 143, 563, 679, 716, 1030
TatI WGTACW 1 cut(s) 297
TauI GCSGC 4 cut(s) 14, 162, 197, 269
TfiI GAWTC 3 cut(s) 200, 362, 823
Tru1I TTAA 6 cut(s) 135, 164, 549, 714, 719, 752
Tru9I TTAA 6 cut(s) 135, 164, 549, 714, 719, 752
TscAI CASTG 1 cut(s) 321
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 2 cut(s) 385, 488
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 6 cut(s) 578, 804, 816, 888, 900, 992
TspGWI ACGGA 2 cut(s) 329, 392
TspRI CASTG 1 cut(s) 321
VneI GTGCAC 1 cut(s) 672
VpaK11BI GGWCC 1 cut(s) 337
XapI RAATTY 1 cut(s) 563
XcmI CCANNNNNNNNNTGG 1 cut(s) 313
Zsp2I ATGCAT 1 cut(s) 1102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.