RLG00000023276

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0013751
Physical Location & Seq
Reverse (-)
21062321 .. 21064629
2309 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023276

Sequence Viewer

Length: 438 bp
ATGTACGTATCAAAGGACATATTTAGTAGGAGGCCTAGGCCCATAAATCTGATTAGTTCATCCAGAATGATGAATTTATCCCTGTCAGTTCTCATCTTTAAAAAGAAGAAGAAGAATAATCACCCAGATACGGAGAAAGTTTTGAGGATCTTTAAAAACCTGTTCCGGATTTGGAAATTGCTTGAGAATGCAAGACTGGACCTGTCTATGGTGCTAAATCAGAAAAGTGCTACTTCACCAAATCTCCCTGCTGTTTCTTCAGTACTGCTTCTAAGGAGCAGTATGGGTATTACTGAAGCATTGCAATTGCAGGTCCAAAAGCGGCTTCATGAACAACTTGAGGTATGCAGTTGGAAGCCATGTACTGTCTTTATGCCTCTGAGCTGGTTGTTGGTTGGGATCTGTTTACAAGATTTTGTAGAGATTCAGAATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.81

Weight (kDa)

10.14

Isoelectric Point (pI)

52.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_CC_LHEQLE PF14379 96 - 115 1e-05 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 301
AccIII TCCGGA 1 cut(s) 165
AciI CCGC 1 cut(s) 322
AclWI GGATC 2 cut(s) 155, 407
AcsI RAATTY 1 cut(s) 73
AcuI CTGAAG 2 cut(s) 243, 315
AfaI GTAC 3 cut(s) 5, 264, 364
AfiI CCNNNNNNNGG 2 cut(s) 130, 208
AjuI GAANNNNNNNTTGG 2 cut(s) 309, 341
AluBI AGCT 1 cut(s) 384
AluI AGCT 1 cut(s) 384
AlwI GGATC 2 cut(s) 155, 407
Aor13HI TCCGGA 1 cut(s) 165
AoxI GGCC 2 cut(s) 32, 38
ApoI RAATTY 1 cut(s) 73
AspA2I CCTAGG 1 cut(s) 35
AspS9I GGNCC 3 cut(s) 39, 199, 313
AsuHPI GGTGA 2 cut(s) 113, 228
AvaII GGWCC 2 cut(s) 199, 313
AvrII CCTAGG 1 cut(s) 35
BfaI CTAG 1 cut(s) 36
BfuAI ACCTGC 1 cut(s) 301
BisI GCNGC 1 cut(s) 323
BlnI CCTAGG 1 cut(s) 35
BlsI GCNGC 1 cut(s) 324
BmcAI AGTACT 1 cut(s) 264
Bme18I GGWCC 2 cut(s) 199, 313
BmgT120I GGNCC 3 cut(s) 39, 199, 313
BpuEI CTTGAG 2 cut(s) 203, 359
BsaAI YACGTR 1 cut(s) 7
BsaJI CCNNGG 1 cut(s) 35
BsaWI WCCGGW 1 cut(s) 165
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 208
Bse1I ACTGG 1 cut(s) 201
Bse3DI GCAATG 1 cut(s) 299
BseAI TCCGGA 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 35
BseGI GGATG 1 cut(s) 59
BseLI CCNNNNNNNGG 2 cut(s) 130, 208
BseMI GCAATG 1 cut(s) 299
BseMII CTCAG 1 cut(s) 371
BseNI ACTGG 1 cut(s) 201
BshFI GGCC 2 cut(s) 34, 40
BsiSI CCGG 1 cut(s) 166
BslI CCNNNNNNNGG 2 cut(s) 130, 208
BsmI GAATGC 1 cut(s) 193
BsnI GGCC 2 cut(s) 34, 40
Bsp13I TCCGGA 1 cut(s) 165
Bsp143I GATC 2 cut(s) 147, 399
BspACI CCGC 1 cut(s) 322
BspANI GGCC 2 cut(s) 34, 40
BspCNI CTCAG 1 cut(s) 372
BspEI TCCGGA 1 cut(s) 165
BspHI TCATGA 1 cut(s) 328
BspMI ACCTGC 1 cut(s) 301
BspPI GGATC 2 cut(s) 155, 407
BsrDI GCAATG 1 cut(s) 299
BsrI ACTGG 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 2 cut(s) 147, 399
BssT1I CCWWGG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 367
BstBAI YACGTR 1 cut(s) 7
BstDEI CTNAG 2 cut(s) 272, 380
BstF5I GGATG 1 cut(s) 59
BstKTI GATC 2 cut(s) 150, 402
BstMBI GATC 2 cut(s) 147, 399
BstSNI TACGTA 1 cut(s) 7
BstX2I RGATCY 2 cut(s) 147, 399
BstYI RGATCY 2 cut(s) 147, 399
BsuRI GGCC 2 cut(s) 34, 40
BtsCI GGATG 1 cut(s) 59
BveI ACCTGC 1 cut(s) 301
CciI TCATGA 1 cut(s) 328
Cfr13I GGNCC 3 cut(s) 39, 199, 313
Csp6I GTAC 3 cut(s) 4, 263, 363
CviAII CATG 2 cut(s) 329, 360
CviJI RGCY 5 cut(s) 34, 40, 325, 358, 384
CviKI_1 RGCY 5 cut(s) 34, 40, 325, 358, 384
CviQI GTAC 3 cut(s) 4, 263, 363
DdeI CTNAG 2 cut(s) 272, 380
DpnI GATC 2 cut(s) 149, 401
DpnII GATC 2 cut(s) 147, 399
DraI TTTAAA 2 cut(s) 100, 154
Eco105I TACGTA 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 35
Eco147I AGGCCT 1 cut(s) 34
Eco47I GGWCC 2 cut(s) 199, 313
Eco57I CTGAAG 2 cut(s) 243, 315
EcoT14I CCWWGG 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 35
FaeI CATG 2 cut(s) 332, 363
FaiI YATR 8 cut(s) 20, 44, 209, 284, 330, 346, 361, 374
FalI AAGNNNNNCTT 2 cut(s) 217, 249
FatI CATG 2 cut(s) 328, 359
Fnu4HI GCNGC 1 cut(s) 323
FokI GGATG 1 cut(s) 46
Fsp4HI GCNGC 1 cut(s) 323
FspBI CTAG 1 cut(s) 36
GluI GCNGC 1 cut(s) 323
HaeIII GGCC 2 cut(s) 34, 40
HapII CCGG 1 cut(s) 166
Hin1II CATG 2 cut(s) 332, 363
HinfI GANTC 1 cut(s) 424
HpaII CCGG 1 cut(s) 166
HphI GGTGA 2 cut(s) 113, 228
Hpy166II GTNNAC 1 cut(s) 407
Hpy188I TCNGA 4 cut(s) 51, 222, 381, 429
Hpy188III TCNNGA 3 cut(s) 63, 166, 329
Hpy8I GTNNAC 1 cut(s) 407
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 4 cut(s) 191, 304, 310, 348
HpyF3I CTNAG 2 cut(s) 272, 380
HpySE526I ACGT 1 cut(s) 6
Hsp92II CATG 2 cut(s) 332, 363
Kpn2I TCCGGA 1 cut(s) 165
Kzo9I GATC 2 cut(s) 147, 399
LmnI GCTCC 1 cut(s) 276
MaeI CTAG 1 cut(s) 36
MaeII ACGT 1 cut(s) 6
MalI GATC 2 cut(s) 149, 401
MboI GATC 2 cut(s) 147, 399
MboII GAAGA 4 cut(s) 118, 121, 124, 249
MfeI CAATTG 1 cut(s) 305
MflI RGATCY 2 cut(s) 147, 399
MluCI AATT 3 cut(s) 73, 176, 305
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 4 cut(s) 24, 138, 334, 387
MroI TCCGGA 1 cut(s) 165
MseI TTAA 2 cut(s) 99, 153
MspI CCGG 1 cut(s) 166
MunI CAATTG 1 cut(s) 305
Mva1269I GAATGC 1 cut(s) 193
NdeII GATC 2 cut(s) 147, 399
NlaIII CATG 2 cut(s) 332, 363
PagI TCATGA 1 cut(s) 328
PceI AGGCCT 1 cut(s) 34
PctI GAATGC 1 cut(s) 193
PfeI GAWTC 1 cut(s) 424
PkrI GCNGC 1 cut(s) 324
Ppu21I YACGTR 1 cut(s) 7
PspPI GGNCC 3 cut(s) 39, 199, 313
PsuI RGATCY 2 cut(s) 147, 399
RsaI GTAC 3 cut(s) 5, 264, 364
RsaNI GTAC 3 cut(s) 4, 263, 363
SaqAI TTAA 2 cut(s) 99, 153
SatI GCNGC 1 cut(s) 323
Sau3AI GATC 2 cut(s) 147, 399
Sau96I GGNCC 3 cut(s) 39, 199, 313
ScaI AGTACT 1 cut(s) 264
SetI ASST 6 cut(s) 9, 162, 204, 315, 345, 386
SinI GGWCC 2 cut(s) 199, 313
SmlI CTYRAG 2 cut(s) 182, 338
SmoI CTYRAG 2 cut(s) 182, 338
SnaBI TACGTA 1 cut(s) 7
Sse9I AATT 3 cut(s) 73, 176, 305
SseBI AGGCCT 1 cut(s) 34
SsiI CCGC 1 cut(s) 322
SspMI CTAG 1 cut(s) 36
StuI AGGCCT 1 cut(s) 34
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 1 cut(s) 367
TaiI ACGT 1 cut(s) 9
TasI AATT 3 cut(s) 73, 176, 305
TatI WGTACW 2 cut(s) 262, 362
TauI GCSGC 1 cut(s) 325
TfiI GAWTC 1 cut(s) 424
Tru1I TTAA 2 cut(s) 99, 153
Tru9I TTAA 2 cut(s) 99, 153
TspDTI ATGAA 4 cut(s) 48, 86, 317, 345
TspGWI ACGGA 1 cut(s) 146
VpaK11BI GGWCC 2 cut(s) 199, 313
XapI RAATTY 1 cut(s) 73
XmaJI CCTAGG 1 cut(s) 35
XspI CTAG 1 cut(s) 36
ZrmI AGTACT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.