Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0013751

Physical Location & Seq

Genomic Coordinates Reverse (-)

61374241 .. 61378756

Gene Structure 4516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00210970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGGGTATTACCGAAGCATTGCGATTGCGGGTAGAACTCCAAAAGTGGCTTCATGAACAACTTGAGCGTCACCAATTTTTTTCTGGGATAGATTGGAGTGCAAAGTCAAACAAAATAGTTACTTCATATCATGATTGGAACTTGAGAAGACTTCCTTGTACCTCCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030838 GO:0031334 GO:0032271 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

56

Amino Acids

6.7

Weight (kDa)

9.1

Isoelectric Point (pI)

56.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_CC_LHEQLE	PF14379	1 - 22	2.2e-06	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0013751)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0341161 RchiOBHm_Chr1g0372271 RchiOBHm_Chr5g0016161 RchiOBHm_Chr5g0035391
rosa_laevigata	RLG00000023276 RLG00000028206
rosa_multiflora	Rmu_co8303235.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057450 Rroxscaffold_7G00210970
rosa_rugosa	Rorug03G0205900 Rorug03G0206200 Rorug03G0343100 Rorug04G0385400 Rorug04G0385500
rosa_samantha	Rh2AG140100 Rh3AG019500 Rh4AG146100 Rh5AG085400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	28, 165
AfaI	GTAC	1 cut(s)	160
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 65
AsuHPI	GGTGA	1 cut(s)	62
BbsI	GAAGAC	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	154
BpuEI	CTTGAG	2 cut(s)	83, 163
Bse3DI	GCAATG	1 cut(s)	17
BseMI	GCAATG	1 cut(s)	17
BspACI	CCGC	2 cut(s)	28, 165
BspHI	TCATGA	2 cut(s)	52, 130
BsrDI	GCAATG	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	154
CciI	TCATGA	2 cut(s)	52, 130
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	2 cut(s)	53, 131
CviJI	RGCY	1 cut(s)	49
CviKI_1	RGCY	1 cut(s)	49
CviQI	GTAC	1 cut(s)	159
FaeI	CATG	2 cut(s)	56, 134
FaiI	YATR	3 cut(s)	54, 127, 132
FalI	AAGNNNNNCTT	2 cut(s)	139, 171
FatI	CATG	2 cut(s)	52, 130
FauI	CCCGC	1 cut(s)	21
HgaI	GACGC	1 cut(s)	56
Hin1II	CATG	2 cut(s)	56, 134
HphI	GGTGA	1 cut(s)	62
Hpy188III	TCNNGA	2 cut(s)	53, 131
HpyCH4V	TGCA	1 cut(s)	101
Hsp92II	CATG	2 cut(s)	56, 134
LpnPI	CCDG	1 cut(s)	69
MaeIII	GTNAC	2 cut(s)	68, 118
MboII	GAAGA	1 cut(s)	159
MluCI	AATT	1 cut(s)	74
MseI	TTAA	1 cut(s)	169
NlaIII	CATG	2 cut(s)	56, 134
NmuCI	GTSAC	1 cut(s)	68
PagI	TCATGA	2 cut(s)	52, 130
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	169
SetI	ASST	1 cut(s)	164
SgeI	CNNG	6 cut(s)	41, 65, 74, 96, 143, 154
SmlI	CTYRAG	2 cut(s)	62, 142
SmoI	CTYRAG	2 cut(s)	62, 142
Sse9I	AATT	1 cut(s)	74
SsiI	CCGC	2 cut(s)	28, 165
TasI	AATT	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	169
Tru9I	TTAA	1 cut(s)	169
TseFI	GTSAC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	3 cut(s)	41, 69, 114
XcmI	CCANNNNNNNNNTGG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.