Rh2AG140100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0013751
Physical Location & Seq
Reverse (-)
12804727 .. 12809700
4974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG140100.1

Sequence Viewer

Length: 396 bp
ATGCCATTACCTCCCAAAGTAGAAGTGTTTGCAGCTTCAAGAGCCAAAAGAGTAGGAGGAGTTATAGCCGAAGCAAAAAGGTTGCCTGTGAGTAACCGAGTCTGGTCCCTGATTGGGTTAATTGGAAGAGTATCCAAGACTGAGATTGGAGGGGGTGAATTTGCTCTCCGCTCGGGGTGCCGGGCTTGGCTCAATAGTCATCCCACAAGCAGCAGGAGCAGTATGGGTATTACTGAAGCATTGCGATTGCATGTAGAACTCCAAAAGCGGCTTCATGAACAACTTGAGGTATGCAGTTGGAAGCCATGCACTGTCTTTATGTCTCTGAGCTGGTTGTTGGTTGGGATCTGTTTACAAGAAGATTTTTGTAGAGATTCGGAATATATAGAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.62

Weight (kDa)

8.97

Isoelectric Point (pI)

69.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_CC_LHEQLE PF14379 76 - 97 2.2e-08 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 177
AccBSI CCGCTC 1 cut(s) 171
AciI CCGC 2 cut(s) 169, 268
AclWI GGATC 1 cut(s) 353
AcsI RAATTY 2 cut(s) 158, 390
AcuI CTGAAG 1 cut(s) 255
AfiI CCNNNNNNNGG 1 cut(s) 114
AgsI TTSAA 1 cut(s) 39
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
AluBI AGCT 2 cut(s) 35, 330
AluI AGCT 2 cut(s) 35, 330
Alw26I GTCTC 1 cut(s) 327
AlwI GGATC 1 cut(s) 353
Ama87I CYCGRG 1 cut(s) 172
ApeKI GCWGC 2 cut(s) 32, 210
ApoI RAATTY 2 cut(s) 158, 390
AspS9I GGNCC 1 cut(s) 105
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 167
AvaI CYCGRG 1 cut(s) 172
AvaII GGWCC 1 cut(s) 105
BanI GGYRCC 1 cut(s) 177
BbvI GCAGC 2 cut(s) 44, 222
BciVI GTATCC 1 cut(s) 142
BcnI CCSGG 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 327
BfuI GTATCC 1 cut(s) 142
BisI GCNGC 3 cut(s) 33, 211, 269
BlsI GCNGC 3 cut(s) 34, 212, 270
Bme1390I CCNGG 1 cut(s) 182
Bme18I GGWCC 1 cut(s) 105
BmeT110I CYCGRG 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 105
BmiI GGNNCC 2 cut(s) 107, 179
BmrFI CCNGG 1 cut(s) 182
BpuEI CTTGAG 1 cut(s) 305
BpuMI CCSGG 1 cut(s) 182
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse3DI GCAATG 1 cut(s) 239
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMI GCAATG 1 cut(s) 239
BseMII CTCAG 2 cut(s) 132, 317
BseRI GAGGAG 1 cut(s) 72
BseXI GCAGC 2 cut(s) 44, 222
BshNI GGYRCC 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 172
BsiSI CCGG 1 cut(s) 181
BslFI GGGAC 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 327
BsmFI GGGAC 1 cut(s) 91
BsoBI CYCGRG 1 cut(s) 172
Bsp143I GATC 1 cut(s) 345
BspACI CCGC 2 cut(s) 169, 268
BspCNI CTCAG 2 cut(s) 133, 318
BspHI TCATGA 1 cut(s) 274
BspLI GGNNCC 2 cut(s) 107, 179
BspPI GGATC 1 cut(s) 353
BspT107I GGYRCC 1 cut(s) 177
BsrBI CCGCTC 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 239
BssMI GATC 1 cut(s) 345
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 1 cut(s) 121
BstDEI CTNAG 2 cut(s) 141, 326
BstF5I GGATG 1 cut(s) 199
BstKTI GATC 1 cut(s) 348
BstMAI GTCTC 1 cut(s) 327
BstMBI GATC 1 cut(s) 345
BstMWI GCNNNNNNNGC 3 cut(s) 41, 177, 216
BstNSI RCATGY 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 180
BstV1I GCAGC 2 cut(s) 44, 222
BstX2I RGATCY 1 cut(s) 345
BstYI RGATCY 1 cut(s) 345
BsuI GTATCC 1 cut(s) 142
BtsCI GGATG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 309
CciI TCATGA 1 cut(s) 274
Cfr13I GGNCC 1 cut(s) 105
CviAII CATG 3 cut(s) 251, 275, 306
CviJI RGCY 8 cut(s) 35, 44, 68, 185, 190, 271, 304, 330
CviKI_1 RGCY 8 cut(s) 35, 44, 68, 185, 190, 271, 304, 330
DdeI CTNAG 2 cut(s) 141, 326
DpnI GATC 1 cut(s) 347
DpnII GATC 1 cut(s) 345
Eam1104I CTCTTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 255
Eco88I CYCGRG 1 cut(s) 172
FaeI CATG 3 cut(s) 254, 278, 309
FaiI YATR 9 cut(s) 65, 224, 252, 276, 292, 307, 320, 384, 386
FaqI GGGAC 1 cut(s) 91
FatI CATG 3 cut(s) 250, 274, 305
Fnu4HI GCNGC 3 cut(s) 33, 211, 269
FokI GGATG 1 cut(s) 186
Fsp4HI GCNGC 3 cut(s) 33, 211, 269
GluI GCNGC 3 cut(s) 33, 211, 269
HapII CCGG 1 cut(s) 181
Hin1II CATG 3 cut(s) 254, 278, 309
HinfI GANTC 2 cut(s) 99, 374
HpaII CCGG 1 cut(s) 181
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 353
Hpy188I TCNGA 2 cut(s) 327, 379
Hpy188III TCNNGA 2 cut(s) 39, 275
Hpy8I GTNNAC 1 cut(s) 353
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4V TGCA 4 cut(s) 32, 250, 294, 309
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 177, 216
HpyF3I CTNAG 2 cut(s) 141, 326
Hsp92II CATG 3 cut(s) 254, 278, 309
Kzo9I GATC 1 cut(s) 345
LmnI GCTCC 1 cut(s) 216
LpnPI CCDG 6 cut(s) 88, 99, 122, 194, 199, 316
Lsp1109I GCAGC 2 cut(s) 44, 222
MaeIII GTNAC 1 cut(s) 92
MalI GATC 1 cut(s) 347
MbiI CCGCTC 1 cut(s) 171
MboI GATC 1 cut(s) 345
MboII GAAGA 2 cut(s) 138, 371
MflI RGATCY 1 cut(s) 345
MluCI AATT 3 cut(s) 120, 158, 390
MlyI GAGTC 1 cut(s) 108
MmeI TCCRAC 1 cut(s) 278
MnlI CCTC 4 cut(s) 21, 50, 143, 280
MseI TTAA 2 cut(s) 119, 394
MspI CCGG 1 cut(s) 181
MspR9I CCNGG 1 cut(s) 182
MwoI GCNNNNNNNGC 3 cut(s) 41, 177, 216
NciI CCSGG 1 cut(s) 182
NdeII GATC 1 cut(s) 345
NlaIII CATG 3 cut(s) 254, 278, 309
NlaIV GGNNCC 2 cut(s) 107, 179
NspI RCATGY 1 cut(s) 254
PagI TCATGA 1 cut(s) 274
PfeI GAWTC 1 cut(s) 374
PkrI GCNGC 3 cut(s) 34, 212, 270
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
PspN4I GGNNCC 2 cut(s) 107, 179
PspPI GGNCC 1 cut(s) 105
PsuI RGATCY 1 cut(s) 345
SaqAI TTAA 2 cut(s) 119, 394
SatI GCNGC 3 cut(s) 33, 211, 269
Sau3AI GATC 1 cut(s) 345
Sau96I GGNCC 1 cut(s) 105
SchI GAGTC 1 cut(s) 108
ScrFI CCNGG 1 cut(s) 182
SetI ASST 5 cut(s) 13, 37, 83, 291, 332
SinI GGWCC 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 3 cut(s) 120, 158, 390
SsiI CCGC 2 cut(s) 169, 268
StyD4I CCNGG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 313
TasI AATT 3 cut(s) 120, 158, 390
TauI GCSGC 1 cut(s) 271
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 2 cut(s) 119, 394
Tru9I TTAA 2 cut(s) 119, 394
TscAI CASTG 1 cut(s) 316
TseI GCWGC 2 cut(s) 32, 210
TspDTI ATGAA 2 cut(s) 263, 291
TspRI CASTG 1 cut(s) 316
VpaK11BI GGWCC 1 cut(s) 105
XapI RAATTY 2 cut(s) 158, 390
XceI RCATGY 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.