RLG00000028206

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0013751
Physical Location & Seq
Forward (+)
20038697 .. 20040892
2196 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028206

Sequence Viewer

Length: 342 bp
ATGGCATTTCGCTTTTATAATTTGGTCTGGGTTATGATTTCATCGCACTCCATCATCCAATACCCTCTCCGCCCACTGCCCCATGCTGCACCACCACATCTTCCAAAACAAGTGCTAAATAAGATAAGTGCTACTTCACCAAATCTCCATGCTGTTTCTTCACTACGGCTTCTAAAGTTGCTTTGGAGTGTTAACCTTTCTTGGTGTTTTGATTGGAGCGGTATGGGTATTATTGAAGCATTGCGATTGCAGGTAGAACTCCAAAAGCGGCTTCATGAACAACTTGAGGGGCAGATGGATGATAAGGTTTATAAAGTTGAGGTGATTGCTCTTGAGCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

13.1

Weight (kDa)

9.25

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_CC_LHEQLE PF14379 77 - 98 1.4e-07 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 18, 312
Acc36I ACCTGC 1 cut(s) 241
AccBSI CCGCTC 1 cut(s) 219
AciI CCGC 3 cut(s) 70, 219, 268
AgsI TTSAA 1 cut(s) 236
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
ApeKI GCWGC 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 129, 334
BbvI GCAGC 1 cut(s) 73
BccI CCATC 2 cut(s) 59, 289
BceAI ACGGC 1 cut(s) 182
BfuAI ACCTGC 1 cut(s) 241
BisI GCNGC 2 cut(s) 87, 269
BlsI GCNGC 2 cut(s) 88, 270
BpuEI CTTGAG 1 cut(s) 305
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bse3DI GCAATG 1 cut(s) 239
BseGI GGATG 2 cut(s) 54, 304
BseMI GCAATG 1 cut(s) 239
BseXI GCAGC 1 cut(s) 73
BsgI GTGCAG 1 cut(s) 72
BspACI CCGC 3 cut(s) 70, 219, 268
BspHI TCATGA 1 cut(s) 274
BspMI ACCTGC 1 cut(s) 241
BsrBI CCGCTC 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 239
BstF5I GGATG 2 cut(s) 54, 304
BstV1I GCAGC 1 cut(s) 73
BtgZI GCGATG 1 cut(s) 27
BtsCI GGATG 2 cut(s) 54, 304
BtsI GCAGTG 1 cut(s) 74
BtsIMutI CAGTG 1 cut(s) 74
BveI ACCTGC 1 cut(s) 241
CciI TCATGA 1 cut(s) 274
CviAII CATG 3 cut(s) 83, 149, 275
CviJI RGCY 2 cut(s) 169, 271
CviKI_1 RGCY 2 cut(s) 169, 271
EciI GGCGGA 1 cut(s) 59
FaeI CATG 3 cut(s) 86, 152, 278
FaiI YATR 7 cut(s) 18, 35, 84, 150, 224, 276, 312
FalI AAGNNNNNCTT 2 cut(s) 118, 150
FatI CATG 3 cut(s) 82, 148, 274
Fnu4HI GCNGC 2 cut(s) 87, 269
FokI GGATG 2 cut(s) 41, 311
Fsp4HI GCNGC 2 cut(s) 87, 269
GluI GCNGC 2 cut(s) 87, 269
Hin1II CATG 3 cut(s) 86, 152, 278
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HpaI GTTAAC 1 cut(s) 193
HphI GGTGA 2 cut(s) 129, 334
Hpy166II GTNNAC 1 cut(s) 193
Hpy188III TCNNGA 2 cut(s) 275, 332
Hpy8I GTNNAC 1 cut(s) 193
HpyCH4V TGCA 2 cut(s) 89, 250
Hsp92II CATG 3 cut(s) 86, 152, 278
KspAI GTTAAC 1 cut(s) 193
LmnI GCTCC 1 cut(s) 216
LpnPI CCDG 2 cut(s) 13, 236
Lsp1109I GCAGC 1 cut(s) 73
MbiI CCGCTC 1 cut(s) 219
MboII GAAGA 2 cut(s) 92, 150
MluCI AATT 1 cut(s) 19
MnlI CCTC 3 cut(s) 75, 280, 313
MseI TTAA 1 cut(s) 192
NlaIII CATG 3 cut(s) 86, 152, 278
PagI TCATGA 1 cut(s) 274
PkrI GCNGC 2 cut(s) 88, 270
PsiI TTATAA 2 cut(s) 18, 312
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 2 cut(s) 87, 269
SetI ASST 4 cut(s) 198, 255, 309, 324
SgeI CNNG 8 cut(s) 40, 95, 122, 161, 213, 263, 287, 296
SmlI CTYRAG 2 cut(s) 284, 332
SmoI CTYRAG 2 cut(s) 284, 332
Sse9I AATT 1 cut(s) 19
SsiI CCGC 3 cut(s) 70, 219, 268
TasI AATT 1 cut(s) 19
TauI GCSGC 1 cut(s) 271
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 1 cut(s) 81
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 3 cut(s) 30, 263, 291
TspRI CASTG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.