Rroxscaffold_1G00057450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0013751
Physical Location & Seq
Forward (+)
79396164 .. 79399346
3183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00057450.1

Sequence Viewer

Length: 459 bp
ATGGCATATCGCTTTTATAATTTGGTCCGGGTTATGATTTCATCGCACTCCAATACCCTCTCCGCCCACCGCCTTTGCGTCTTCATGCAAAGCAAATTCGCTCGGCACGATTGGGATTACAAGGAAACCCAAGTTGAGGATGAAGAATCTAAAATTAAGCAGATGGAATTGCCTCGCATTGGTTCGCGCATCTCGTGGGGTTTGGTGCCCGTCCCGAGAGCAGCTGATGATTGCTTGGTCCATTGTCCCTCCACTCGCAAAGCTAAGATCGCTGACCACAAAGTTTGTTCAAACAAAAATGTTCAAGTCACCCGTATGGAAGAATTGGTCAAATCCAATGCCTTCTCCACTCGTCATTTCCTCATAGTGCTTCAAAGAAGAAGCTCCTTTTCAAACCTGCAAAGTCAAGAAACTCTTGGGATGACTAACGACTATGCAGGGCTGATGGAAACATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.54

Weight (kDa)

9.16

Isoelectric Point (pI)

47.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 18
Acc36I ACCTGC 1 cut(s) 405
AccB1I GGYRCC 1 cut(s) 205
AccII CGCG 1 cut(s) 187
AciI CCGC 2 cut(s) 63, 70
AcsI RAATTY 1 cut(s) 95
AfiI CCNNNNNNNGG 2 cut(s) 136, 179
AgsI TTSAA 4 cut(s) 291, 305, 374, 393
AluBI AGCT 3 cut(s) 224, 263, 384
AluI AGCT 3 cut(s) 224, 263, 384
Ama87I CYCGRG 1 cut(s) 214
ApeKI GCWGC 1 cut(s) 221
ApoI RAATTY 1 cut(s) 95
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 2 cut(s) 25, 238
AsuC2I CCSGG 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 301
AvaI CYCGRG 1 cut(s) 214
AvaII GGWCC 2 cut(s) 25, 238
BaeGI GKGCMC 1 cut(s) 210
BanI GGYRCC 1 cut(s) 205
BauI CACGAG 1 cut(s) 193
BbsI GAAGAC 1 cut(s) 73
BbvI GCAGC 1 cut(s) 233
BccI CCATC 2 cut(s) 157, 439
BcnI CCSGG 1 cut(s) 29
BfuAI ACCTGC 1 cut(s) 405
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
Bme1390I CCNGG 1 cut(s) 29
Bme18I GGWCC 2 cut(s) 25, 238
BmeT110I CYCGRG 1 cut(s) 214
BmgT120I GGNCC 2 cut(s) 25, 238
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 29
BmsI GCATC 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 29
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 179
BseGI GGATG 2 cut(s) 145, 426
BseLI CCNNNNNNNGG 2 cut(s) 136, 179
BseSI GKGCMC 1 cut(s) 210
BseXI GCAGC 1 cut(s) 233
Bsh1236I CGCG 1 cut(s) 187
BshNI GGYRCC 1 cut(s) 205
BsiHKCI CYCGRG 1 cut(s) 214
BsiSI CCGG 1 cut(s) 28
BslFI GGGAC 2 cut(s) 197, 231
BslI CCNNNNNNNGG 2 cut(s) 136, 179
BsmFI GGGAC 2 cut(s) 197, 231
BsoBI CYCGRG 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 1 cut(s) 267
BspACI CCGC 2 cut(s) 63, 70
BspFNI CGCG 1 cut(s) 187
BspLI GGNNCC 1 cut(s) 207
BspMI ACCTGC 1 cut(s) 405
BspT107I GGYRCC 1 cut(s) 205
BssMI GATC 1 cut(s) 267
BssSI CACGAG 1 cut(s) 193
Bst2BI CACGAG 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 264
BstF5I GGATG 2 cut(s) 145, 426
BstFNI CGCG 1 cut(s) 187
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 1 cut(s) 270
BstMBI GATC 1 cut(s) 267
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 27
BstSLI GKGCMC 1 cut(s) 210
BstUI CGCG 1 cut(s) 187
BstV1I GCAGC 1 cut(s) 233
BstV2I GAAGAC 1 cut(s) 73
BtgZI GCGATG 1 cut(s) 27
BtsCI GGATG 2 cut(s) 145, 426
BveI ACCTGC 1 cut(s) 405
CfoI GCGC 1 cut(s) 189
Cfr13I GGNCC 2 cut(s) 25, 238
CseI GACGC 1 cut(s) 67
CspCI CAANNNNNGTGG 4 cut(s) 56, 91, 266, 301
CviAII CATG 1 cut(s) 85
CviJI RGCY 4 cut(s) 224, 263, 384, 442
CviKI_1 RGCY 4 cut(s) 224, 263, 384, 442
DdeI CTNAG 1 cut(s) 264
DpnI GATC 1 cut(s) 269
DpnII GATC 1 cut(s) 267
EciI GGCGGA 1 cut(s) 52
Eco47I GGWCC 2 cut(s) 25, 238
Eco88I CYCGRG 1 cut(s) 214
FaeI CATG 1 cut(s) 88
FaiI YATR 7 cut(s) 7, 18, 35, 86, 317, 365, 435
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FaqI GGGAC 2 cut(s) 197, 231
FatI CATG 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 222
FokI GGATG 2 cut(s) 152, 433
Fsp4HI GCNGC 1 cut(s) 222
GlaI GCGC 1 cut(s) 188
GluI GCNGC 1 cut(s) 222
HapII CCGG 1 cut(s) 28
HgaI GACGC 1 cut(s) 67
HhaI GCGC 1 cut(s) 189
Hin1II CATG 1 cut(s) 88
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HinfI GANTC 1 cut(s) 146
HpaII CCGG 1 cut(s) 28
HphI GGTGA 1 cut(s) 301
Hpy188III TCNNGA 3 cut(s) 214, 407, 456
HpyAV CCTTC 1 cut(s) 352
HpyCH4V TGCA 3 cut(s) 88, 400, 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 1 cut(s) 264
Hsp92II CATG 1 cut(s) 88
HspAI GCGC 1 cut(s) 187
Kzo9I GATC 1 cut(s) 267
LmnI GCTCC 1 cut(s) 389
LpnPI CCDG 3 cut(s) 41, 410, 423
Lsp1109I GCAGC 1 cut(s) 233
LweI GCATC 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 307
MalI GATC 1 cut(s) 269
MboI GATC 1 cut(s) 267
MboII GAAGA 4 cut(s) 73, 155, 332, 390
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 5 cut(s) 19, 95, 153, 167, 323
MnlI CCTC 5 cut(s) 68, 130, 183, 259, 371
MseI TTAA 1 cut(s) 156
MslI CAYNNNNRTG 1 cut(s) 314
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 1 cut(s) 28
MspR9I CCNGG 1 cut(s) 29
MvnI CGCG 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 269
NciI CCSGG 1 cut(s) 29
NdeII GATC 1 cut(s) 267
NlaIII CATG 1 cut(s) 88
NlaIV GGNNCC 1 cut(s) 207
NmeAIII GCCGAG 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 307
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 191
PfeI GAWTC 1 cut(s) 146
PkrI GCNGC 1 cut(s) 223
PsiI TTATAA 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 207
PspPI GGNCC 2 cut(s) 25, 238
PvuII CAGCTG 1 cut(s) 224
RseI CAYNNNNRTG 1 cut(s) 314
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 1 cut(s) 267
Sau96I GGNCC 2 cut(s) 25, 238
ScrFI CCNGG 1 cut(s) 29
SduI GDGCHC 1 cut(s) 210
SetI ASST 4 cut(s) 226, 265, 386, 399
SfaNI GCATC 1 cut(s) 198
SinI GGWCC 2 cut(s) 25, 238
SmiMI CAYNNNNRTG 1 cut(s) 314
Sse9I AATT 5 cut(s) 19, 95, 153, 167, 323
SsiI CCGC 2 cut(s) 63, 70
StyD4I CCNGG 1 cut(s) 27
TasI AATT 5 cut(s) 19, 95, 153, 167, 323
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 3 cut(s) 30, 73, 156
VpaK11BI GGWCC 2 cut(s) 25, 238
XapI RAATTY 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.