Rorug03G0206200

Disease resistance protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
18292997 .. 18293410
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0206200.1

Sequence Viewer

Length: 276 bp
ATGCAAAAACTAGGTGCTGCCGTTCCTGCAACTGCATCAGCCATGGGACGGTTGGAGAATGTGACCCTCGGTCCTCCGCAAATGAAGAACATAGAAATTAAAATATATAGGCTGAAAGTGAAATGTGCAAAAGCTTACTCAAATTCCTACTTGCTTACACCTTTTTCATTGAGATTGCCTCACCAAGTGGCTGTCGGGGACCAACTTGTGTCCAGTGTACCAGTGCCCATTAGAGCCGAAGCCGCAGCAACCCTAGTCAGGCTCAGGCTCACCTAA

Protein Analysis

91

Amino Acids

9.84

Weight (kDa)

10.29

Isoelectric Point (pI)

35.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 77, 243
AcsI RAATTY 1 cut(s) 142
AdeI CACNNNGTG 1 cut(s) 187
AfaI GTAC 1 cut(s) 219
AfiI CCNNNNNNNGG 2 cut(s) 48, 258
AhdI GACNNNNNGTC 1 cut(s) 69
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
ApeKI GCWGC 2 cut(s) 17, 245
ApoI RAATTY 1 cut(s) 142
AspS9I GGNCC 2 cut(s) 71, 199
AsuHPI GGTGA 2 cut(s) 173, 262
AvaII GGWCC 2 cut(s) 71, 199
BaeGI GKGCMC 1 cut(s) 228
BbvI GCAGC 2 cut(s) 4, 257
BceAI ACGGC 1 cut(s) 5
BfaI CTAG 2 cut(s) 11, 254
BisI GCNGC 3 cut(s) 18, 243, 246
BlsI GCNGC 3 cut(s) 19, 244, 247
Bme18I GGWCC 2 cut(s) 71, 199
BmeRI GACNNNNNGTC 1 cut(s) 69
BmgT120I GGNCC 2 cut(s) 71, 199
BmiI GGNNCC 1 cut(s) 200
BmsI GCATC 1 cut(s) 44
BplI GAGNNNNNCTC 2 cut(s) 163, 195
Bpu10I CCTNAGC 1 cut(s) 263
BsaJI CCNNGG 2 cut(s) 42, 67
Bsc4I CCNNNNNNNGG 2 cut(s) 48, 258
Bse1I ACTGG 2 cut(s) 213, 221
BseDI CCNNGG 2 cut(s) 42, 67
BseLI CCNNNNNNNGG 2 cut(s) 48, 258
BseNI ACTGG 2 cut(s) 213, 221
BseSI GKGCMC 1 cut(s) 228
BseXI GCAGC 2 cut(s) 4, 257
BslFI GGGAC 2 cut(s) 60, 212
BslI CCNNNNNNNGG 2 cut(s) 48, 258
BsmFI GGGAC 2 cut(s) 60, 212
Bsp1286I GDGCHC 1 cut(s) 228
Bsp19I CCATGG 1 cut(s) 42
BspACI CCGC 2 cut(s) 77, 243
BspCNI CTCAG 1 cut(s) 276
BspLI GGNNCC 1 cut(s) 200
BsrI ACTGG 2 cut(s) 213, 221
BssECI CCNNGG 2 cut(s) 42, 67
BssT1I CCWWGG 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 263
BstDSI CCRYGG 1 cut(s) 42
BstMWI GCNNNNNNNGC 2 cut(s) 26, 242
BstSLI GKGCMC 1 cut(s) 228
BstV1I GCAGC 2 cut(s) 4, 257
BtgI CCRYGG 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 220, 228
Cfr13I GGNCC 2 cut(s) 71, 199
Csp6I GTAC 1 cut(s) 218
CviAII CATG 1 cut(s) 43
CviJI RGCY 8 cut(s) 41, 112, 134, 191, 236, 242, 262, 268
CviKI_1 RGCY 8 cut(s) 41, 112, 134, 191, 236, 242, 262, 268
CviQI GTAC 1 cut(s) 218
DdeI CTNAG 1 cut(s) 263
DraIII CACNNNGTG 1 cut(s) 187
DriI GACNNNNNGTC 1 cut(s) 69
Eam1105I GACNNNNNGTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 42
Eco47I GGWCC 2 cut(s) 71, 199
EcoT14I CCWWGG 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 1 cut(s) 46
FaiI YATR 4 cut(s) 44, 92, 106, 108
FaqI GGGAC 2 cut(s) 60, 212
FatI CATG 1 cut(s) 42
Fnu4HI GCNGC 3 cut(s) 18, 243, 246
Fsp4HI GCNGC 3 cut(s) 18, 243, 246
FspBI CTAG 2 cut(s) 11, 254
GluI GCNGC 3 cut(s) 18, 243, 246
Hin1II CATG 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 132
HphI GGTGA 2 cut(s) 173, 262
Hpy166II GTNNAC 1 cut(s) 218
Hpy8I GTNNAC 1 cut(s) 218
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4V TGCA 4 cut(s) 4, 29, 35, 128
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 242
HpyF3I CTNAG 1 cut(s) 263
Hsp92II CATG 1 cut(s) 46
LpnPI CCDG 5 cut(s) 39, 226, 234, 244, 250
Lsp1109I GCAGC 2 cut(s) 4, 257
LweI GCATC 1 cut(s) 44
MaeI CTAG 2 cut(s) 11, 254
MaeIII GTNAC 1 cut(s) 61
MboII GAAGA 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 2 cut(s) 96, 142
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 3 cut(s) 77, 84, 189
MseI TTAA 1 cut(s) 99
MwoI GCNNNNNNNGC 2 cut(s) 26, 242
NcoI CCATGG 1 cut(s) 42
NlaIII CATG 1 cut(s) 46
NlaIV GGNNCC 1 cut(s) 200
NmuCI GTSAC 1 cut(s) 61
PkrI GCNGC 3 cut(s) 19, 244, 247
PspN4I GGNNCC 1 cut(s) 200
PspPI GGNCC 2 cut(s) 71, 199
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 3 cut(s) 18, 243, 246
Sau96I GGNCC 2 cut(s) 71, 199
SduI GDGCHC 1 cut(s) 228
SetI ASST 4 cut(s) 16, 136, 163, 275
SfaNI GCATC 1 cut(s) 44
SinI GGWCC 2 cut(s) 71, 199
Sse9I AATT 2 cut(s) 96, 142
SsiI CCGC 2 cut(s) 77, 243
SspMI CTAG 2 cut(s) 11, 254
StyI CCWWGG 1 cut(s) 42
TaaI ACNGT 1 cut(s) 51
TaqII GACCGA 1 cut(s) 59
TasI AATT 2 cut(s) 96, 142
TauI GCSGC 1 cut(s) 245
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 2 cut(s) 220, 228
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 2 cut(s) 17, 245
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 2 cut(s) 98, 156
TspRI CASTG 2 cut(s) 220, 228
VpaK11BI GGWCC 2 cut(s) 71, 199
XapI RAATTY 1 cut(s) 142
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XspI CTAG 2 cut(s) 11, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.