Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8303235.1

Orthogroup ID

OG0013751

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 685

Gene Structure 685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8303235.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 676 bp

atgttggacttgactggaacccgttttgagacagttccctctcaagtgatatcaaggttgtatagattggaagttctgtacatgagatgtaattttggcgagtggggttgtaaagctgcgggaggctgcttgtgttttctttgtaagaatgctagctttgatgagttaattggcttgtcaagtttgaacactttggaggttggcgtatgtggtgcagaatgcttgcctcaaaacgttaagttcaatccaaattgggacaggttttgtataattatccaaagatacggcacgtacaattttggcatttattaccacgacttcctacaccgttcttcaagaacattgatcacggtcgaaaccatgaaaaacttacccgattggttcataagtgtagtgacagaaagaacagatgaattatggtacagaggtcaccatggcttaactaaccttctcgaggaacacgaccgtgggagattacatggactcaagtatttgtgtgtagaatcttccgaatatgccaaagtgttgttgaacacaataacatggactagggtgtcaaatgaacctgtgtttgagaacttggaagcgttggacatctccgggggtctcttggaggagctatgtgtcggtgaattaccacctggctctctacgtaatcttaagaaattgatgatgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

225

Amino Acids

25.79

Weight (kDa)

5.71

Isoelectric Point (pI)

23.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013751)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0341161 RchiOBHm_Chr1g0372271 RchiOBHm_Chr5g0016161 RchiOBHm_Chr5g0035391
rosa_laevigata	RLG00000023276 RLG00000028206
rosa_multiflora	Rmu_co8303235.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057450 Rroxscaffold_7G00210970
rosa_rugosa	Rorug03G0205900 Rorug03G0206200 Rorug03G0343100 Rorug04G0385400 Rorug04G0385500
rosa_samantha	Rh2AG140100 Rh3AG019500 Rh4AG146100 Rh5AG085400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	553
AciI	CCGC	1 cut(s)	119
AclI	AACGTT	1 cut(s)	234
AfaI	GTAC	3 cut(s)	80, 293, 422
AfiI	CCNNNNNNNGG	1 cut(s)	454
AflII	CTTAAG	1 cut(s)	659
AgsI	TTSAA	4 cut(s)	187, 244, 336, 532
AjnI	CCWGG	1 cut(s)	640
AleI	CACNNNNGTG	1 cut(s)	465
AluBI	AGCT	3 cut(s)	116, 156, 619
AluI	AGCT	3 cut(s)	116, 156, 619
Alw26I	GTCTC	2 cut(s)	23, 611
Ama87I	CYCGRG	1 cut(s)	452
ApeKI	GCWGC	2 cut(s)	116, 126
AsuC2I	CCSGG	1 cut(s)	601
AsuHPI	GGTGA	2 cut(s)	422, 641
AsuNHI	GCTAGC	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	452
BaeI	ACNNNNGTAYC	2 cut(s)	412, 445
BbvI	GCAGC	2 cut(s)	103, 113
BccI	CCATC	1 cut(s)	667
BceAI	ACGGC	1 cut(s)	301
BciT130I	CCWGG	1 cut(s)	642
BclI	TGATCA	1 cut(s)	345
BcnI	CCSGG	1 cut(s)	601
BcoDI	GTCTC	2 cut(s)	23, 611
BfaI	CTAG	2 cut(s)	153, 549
BfrI	CTTAAG	1 cut(s)	659
BisI	GCNGC	2 cut(s)	117, 127
BlsI	GCNGC	2 cut(s)	118, 128
Bme1390I	CCNGG	2 cut(s)	601, 642
BmeT110I	CYCGRG	1 cut(s)	452
BmiI	GGNNCC	1 cut(s)	19
BmrFI	CCNGG	2 cut(s)	601, 642
BmtI	GCTAGC	1 cut(s)	156
BpuEI	CTTGAG	2 cut(s)	27, 470
BpuMI	CCSGG	1 cut(s)	601
BsaAI	YACGTR	2 cut(s)	291, 653
BsaI	GGTCTC	1 cut(s)	611
BsaJI	CCNNGG	3 cut(s)	433, 466, 600
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
Bse1I	ACTGG	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	642
BseDI	CCNNGG	3 cut(s)	433, 466, 600
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseNI	ACTGG	1 cut(s)	19
BseRI	GAGGAG	1 cut(s)	629
BseXI	GCAGC	2 cut(s)	103, 113
BsgI	GTGCAG	1 cut(s)	234
Bsh1285I	CGRYCG	2 cut(s)	354, 466
BsiEI	CGRYCG	2 cut(s)	354, 466
BsiHKCI	CYCGRG	1 cut(s)	452
BsiSI	CCGG	1 cut(s)	600
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmAI	GTCTC	2 cut(s)	23, 611
BsmFI	GGGAC	1 cut(s)	269
BsmI	GAATGC	2 cut(s)	154, 224
Bso31I	GGTCTC	1 cut(s)	611
BsoBI	CYCGRG	1 cut(s)	452
Bsp1407I	TGTACA	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	345
Bsp19I	CCATGG	1 cut(s)	433
BspACI	CCGC	1 cut(s)	119
BspLI	GGNNCC	1 cut(s)	19
BspOI	GCTAGC	1 cut(s)	156
BspTI	CTTAAG	1 cut(s)	659
BspTNI	GGTCTC	1 cut(s)	611
BsrGI	TGTACA	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	19
BssECI	CCNNGG	3 cut(s)	433, 466, 600
BssMI	GATC	1 cut(s)	345
BssT1I	CCWWGG	1 cut(s)	433
Bst2UI	CCWGG	1 cut(s)	642
Bst4CI	ACNGT	4 cut(s)	34, 329, 352, 467
BstAFI	CTTAAG	1 cut(s)	659
BstAUI	TGTACA	1 cut(s)	78
BstBAI	YACGTR	2 cut(s)	291, 653
BstC8I	GCNNGC	2 cut(s)	154, 224
BstDSI	CCRYGG	2 cut(s)	433, 466
BstEII	GGTNACC	1 cut(s)	428
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstKTI	GATC	1 cut(s)	348
BstMAI	GTCTC	2 cut(s)	23, 611
BstMBI	GATC	1 cut(s)	345
BstMCI	CGRYCG	2 cut(s)	354, 466
BstNI	CCWGG	1 cut(s)	642
BstPI	GGTNACC	1 cut(s)	428
BstSCI	CCNGG	2 cut(s)	599, 640
BstSNI	TACGTA	1 cut(s)	653
BstV1I	GCAGC	2 cut(s)	103, 113
BtgI	CCRYGG	2 cut(s)	433, 466
Cac8I	GCNNGC	2 cut(s)	154, 224
Csp6I	GTAC	3 cut(s)	79, 292, 421
CviAII	CATG	5 cut(s)	82, 361, 434, 479, 543
CviJI	RGCY	7 cut(s)	116, 126, 156, 174, 438, 619, 645
CviKI_1	RGCY	7 cut(s)	116, 126, 156, 174, 438, 619, 645
CviQI	GTAC	3 cut(s)	79, 292, 421
DpnI	GATC	1 cut(s)	347
DpnII	GATC	1 cut(s)	345
DrdI	GACNNNNNNGTC	1 cut(s)	553
DseDI	GACNNNNNNGTC	1 cut(s)	553
Eco105I	TACGTA	1 cut(s)	653
Eco130I	CCWWGG	1 cut(s)	433
Eco31I	GGTCTC	1 cut(s)	611
Eco32I	GATATC	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	452
Eco91I	GGTNACC	1 cut(s)	428
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoO65I	GGTNACC	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	640
EcoRV	GATATC	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	433
FaeI	CATG	5 cut(s)	85, 364, 437, 482, 546
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	5 cut(s)	81, 360, 433, 478, 542
FauI	CCCGC	1 cut(s)	112
FbaI	TGATCA	1 cut(s)	345
Fnu4HI	GCNGC	2 cut(s)	117, 127
Fsp4HI	GCNGC	2 cut(s)	117, 127
FspBI	CTAG	2 cut(s)	153, 549
GluI	GCNGC	2 cut(s)	117, 127
HapII	CCGG	1 cut(s)	600
Hin1II	CATG	5 cut(s)	85, 364, 437, 482, 546
HinfI	GANTC	2 cut(s)	483, 503
HpaII	CCGG	1 cut(s)	600
HphI	GGTGA	2 cut(s)	422, 641
Hpy188I	TCNGA	1 cut(s)	511
Hpy188III	TCNNGA	2 cut(s)	336, 452
HpyAV	CCTTC	1 cut(s)	458
HpyCH4III	ACNGT	4 cut(s)	34, 329, 352, 467
HpyCH4IV	ACGT	3 cut(s)	234, 290, 652
HpyCH4V	TGCA	1 cut(s)	215
HpySE526I	ACGT	3 cut(s)	234, 290, 652
Hsp92II	CATG	5 cut(s)	85, 364, 437, 482, 546
Ksp22I	TGATCA	1 cut(s)	345
Kzo9I	GATC	1 cut(s)	345
LmnI	GCTCC	1 cut(s)	616
LpnPI	CCDG	5 cut(s)	244, 579, 613, 627, 654
Lsp1109I	GCAGC	2 cut(s)	103, 113
MaeI	CTAG	2 cut(s)	153, 549
MaeII	ACGT	3 cut(s)	234, 290, 652
MaeIII	GTNAC	2 cut(s)	394, 428
MalI	GATC	1 cut(s)	347
MboI	GATC	1 cut(s)	345
MboII	GAAGA	2 cut(s)	324, 498
MluCI	AATT	8 cut(s)	91, 168, 250, 270, 295, 413, 632, 665
MlyI	GAGTC	1 cut(s)	477
MmeI	TCCRAC	1 cut(s)	570
MnlI	CCTC	7 cut(s)	49, 116, 190, 237, 419, 448, 607
MseI	TTAA	4 cut(s)	167, 237, 440, 660
MslI	CAYNNNNRTG	1 cut(s)	465
MspCI	CTTAAG	1 cut(s)	659
MspI	CCGG	1 cut(s)	600
MspR9I	CCNGG	2 cut(s)	601, 642
Mva1269I	GAATGC	2 cut(s)	154, 224
MvaI	CCWGG	1 cut(s)	642
NciI	CCSGG	1 cut(s)	601
NcoI	CCATGG	1 cut(s)	433
NdeII	GATC	1 cut(s)	345
NheI	GCTAGC	1 cut(s)	152
NlaIII	CATG	5 cut(s)	85, 364, 437, 482, 546
NlaIV	GGNNCC	1 cut(s)	19
NmuCI	GTSAC	2 cut(s)	394, 428
OliI	CACNNNNGTG	1 cut(s)	465
PaeR7I	CTCGAG	1 cut(s)	452
PcsI	WCGNNNNNNNCGW	1 cut(s)	459
PctI	GAATGC	2 cut(s)	154, 224
PfeI	GAWTC	1 cut(s)	503
PkrI	GCNGC	2 cut(s)	118, 128
PleI	GAGTC	1 cut(s)	477
PpsI	GAGTC	1 cut(s)	477
Ppu21I	YACGTR	2 cut(s)	291, 653
Psp1406I	AACGTT	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	640
PspEI	GGTNACC	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	640
PspN4I	GGNNCC	1 cut(s)	19
RsaI	GTAC	3 cut(s)	80, 293, 422
RsaNI	GTAC	3 cut(s)	79, 292, 421
RseI	CAYNNNNRTG	1 cut(s)	465
SaqAI	TTAA	4 cut(s)	167, 237, 440, 660
SatI	GCNGC	2 cut(s)	117, 127
Sau3AI	GATC	1 cut(s)	345
SchI	GAGTC	1 cut(s)	477
ScrFI	CCNGG	2 cut(s)	601, 642
Sfr274I	CTCGAG	1 cut(s)	452
SlaI	CTCGAG	1 cut(s)	452
SmiMI	CAYNNNNRTG	1 cut(s)	465
SmlI	CTYRAG	4 cut(s)	42, 452, 485, 659
SmoI	CTYRAG	4 cut(s)	42, 452, 485, 659
SnaBI	TACGTA	1 cut(s)	653
Sse9I	AATT	8 cut(s)	91, 168, 250, 270, 295, 413, 632, 665
SsiI	CCGC	1 cut(s)	119
SspMI	CTAG	2 cut(s)	153, 549
StyD4I	CCNGG	2 cut(s)	599, 640
StyI	CCWWGG	1 cut(s)	433
TaaI	ACNGT	4 cut(s)	34, 329, 352, 467
TaiI	ACGT	3 cut(s)	237, 293, 655
TaqI	TCGA	2 cut(s)	354, 453
TasI	AATT	8 cut(s)	91, 168, 250, 270, 295, 413, 632, 665
TatI	WGTACW	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	503
Tru1I	TTAA	4 cut(s)	167, 237, 440, 660
Tru9I	TTAA	4 cut(s)	167, 237, 440, 660
TseFI	GTSAC	2 cut(s)	394, 428
TseI	GCWGC	2 cut(s)	116, 126
Tsp45I	GTSAC	2 cut(s)	394, 428
TspDTI	ATGAA	4 cut(s)	373, 377, 426, 576
Vha464I	CTTAAG	1 cut(s)	659
XagI	CCTNNNNNAGG	1 cut(s)	452
XhoI	CTCGAG	1 cut(s)	452
XspI	CTAG	2 cut(s)	153, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.