RLG00000025106

Golgi vesicle prefusion complex stabilization

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
42020743 .. 42022604
1862 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025106

Sequence Viewer

Length: 1377 bp
ATGGCGAGCAAAAGCTCCAAATCCAACACCAAGATTAGCACGATCAAGATTAACAGCCCCAACTTTAGCGACATCGTCTTTGATACCCCCATTCCTTCATGTCCTTGGAAAGACCGCGAGGGGTTCACCATTGGCCTTGGACCAGGAGACCCGGAGGACTTGCCGGAAGTTTTTGACAAGGTTAGGAACACCAGTGAAGGCTTTTTCAAGAGTTTTGTCAAGATGTTCGACAATTTGGTTACAGACGGGTACAGGGACTTGGCTATGGAGATTGGGAATCTATACGCTGACCACGGTGTTCTACTCCCGGTTGTGACCTTGATCGGCATCATTGATGAGTATGCCGAAGCCGGCAAGACTGCTGAGGCTCTCCATGTGTACCGGATAATGTTGGATTCTGAAGGTTGTGCCCCCAATGCTTACACTTATAGTGTGATCATCAGGGCTCTGGCTGCAGACCCGGACCCCAATTTTCATGTTGTTGCCAAGGAGTTTGTGATGGAGATGATGGGGAAGGGATGGCAGCCGAATGCCAGCACATACACTGCTGTGTTTGAGGCGTTTGCAGGTCAGGAGAAGATGGAGGAGGCCAAGCAGTTTCTGGAGGAGATGAAAGCTAGTGGGTTTGTGGCTGACAAGAAAGCAATGAGGGCTTTCAGAAAGGTTCTAAAGGTTAAAGGGCCTGTTGTCAAACGCATTTTCGATATTCTATTTGATAACTTTGATGACTATTCAGACGAGTCAGATGATGATGATGATGTTGTAAAGAAGTGCACCAAAGACTTTGACTGGTCGAAGTACCCCTCTGAGAGCTATGTTCCTTTCAGCAAGAAACAAGTCATCGAGGACGACCCAGAAAACCCCAAAGATTTGGAGCAAAAGTTCGACACAATGTGCAGGAATGGAGCCCTCGTCAGCACTGTGACCAGGATGCTCAACATGCTAAAAAATGATGGATTCTTGTCCCAAGCTGAGGAGATCAGGACTGCGTTAGAAGTGGATCATAATCTGCCTGAAGTCGTGACTCATACTAGTGTCATCGAGATCTATGGCAGGCATGATGAGGCCAAGCATGCTCTCAAGGTGTTTTTGCGCATGTTATCCCTTGGAGTTTTCCCAAACGCATACACTTATAGTGTCCTCAAGTACTTACTGGAAATGATGGATAAGGGAATGCAGCCCAATGCCAGGACATACACCCCAGTATTCAAGGCCTTTGCCCGGCTAAAGCAGGATAATGTGAAGAAGGGGAAGGAGTTTCTTATGGAGATGGGAGCTATGGGGTTTAGGACAAACAAGAAGGCTGTGATGGAGGTTCTCAAGGACAGAAAAGGGCCTGTTATTAAAACGGTCATCAAAATTCTCTTTGGCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

459

Amino Acids

51.77

Weight (kDa)

5.6

Isoelectric Point (pI)

27.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 104 - 151 7.6e-09 PPR repeat family
PPR_long PF17177 121 - 227 9.6e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 338 - 381 1.4e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1094
Acc36I ACCTGC 1 cut(s) 557
AccII CGCG 1 cut(s) 117
AciI CCGC 1 cut(s) 115
AclWI GGATC 1 cut(s) 1008
AcsI RAATTY 1 cut(s) 1359
AcuI CTGAAG 2 cut(s) 420, 1035
AdeI CACNNNGTG 1 cut(s) 894
AfaI GTAC 4 cut(s) 251, 380, 800, 1148
AfiI CCNNNNNNNGG 3 cut(s) 973, 1188, 1221
AgsI TTSAA 2 cut(s) 208, 1210
AhlI ACTAGT 1 cut(s) 1031
AjnI CCWGG 3 cut(s) 142, 926, 1187
AleI CACNNNNGTG 1 cut(s) 548
AloI GAACNNNNNNTCC 2 cut(s) 866, 898
AluBI AGCT 5 cut(s) 15, 617, 813, 971, 1277
AluI AGCT 5 cut(s) 15, 617, 813, 971, 1277
Alw21I GWGCWC 1 cut(s) 776
Alw26I GTCTC 1 cut(s) 141
Alw44I GTGCAC 1 cut(s) 772
AlwI GGATC 1 cut(s) 1008
AlwNI CAGNNNCTG 1 cut(s) 601
AoxI GGCC 6 cut(s) 133, 588, 680, 1065, 1212, 1334
ApaLI GTGCAC 1 cut(s) 772
ApeKI GCWGC 3 cut(s) 452, 523, 1177
ApoI RAATTY 1 cut(s) 1359
ArsI GACNNNNNNTTYG 2 cut(s) 62, 94
AspLEI GCGC 1 cut(s) 1095
AspS9I GGNCC 4 cut(s) 140, 463, 680, 1334
AsuC2I CCSGG 4 cut(s) 152, 308, 461, 1222
AsuHPI GGTGA 1 cut(s) 118
AvaII GGWCC 2 cut(s) 140, 463
BaeGI GKGCMC 2 cut(s) 412, 776
BanII GRGCYC 2 cut(s) 448, 910
Bbv12I GWGCWC 1 cut(s) 776
BbvCI CCTCAGC 2 cut(s) 363, 972
BbvI GCAGC 3 cut(s) 439, 535, 1189
BccI CCATC 8 cut(s) 493, 502, 513, 574, 947, 1156, 1264, 1303
BciT130I CCWGG 3 cut(s) 144, 928, 1189
BclI TGATCA 1 cut(s) 435
BcnI CCSGG 4 cut(s) 152, 308, 461, 1222
BcoDI GTCTC 1 cut(s) 141
BcuI ACTAGT 1 cut(s) 1031
BfaI CTAG 2 cut(s) 618, 1032
BfmI CTRYAG 1 cut(s) 453
BfuAI ACCTGC 1 cut(s) 557
BglII AGATCT 1 cut(s) 1044
BisI GCNGC 3 cut(s) 453, 524, 1178
BlsI GCNGC 3 cut(s) 454, 525, 1179
BmcAI AGTACT 1 cut(s) 1148
Bme1390I CCNGG 7 cut(s) 144, 152, 308, 461, 928, 1189, 1222
Bme18I GGWCC 2 cut(s) 140, 463
BmgT120I GGNCC 4 cut(s) 140, 463, 680, 1334
BmiI GGNNCC 2 cut(s) 465, 907
BmrFI CCNGG 7 cut(s) 144, 152, 308, 461, 928, 1189, 1222
BmrI ACTGGG 1 cut(s) 1196
BmsI GCATC 2 cut(s) 336, 921
BmuI ACTGGG 1 cut(s) 1196
BpmI CTGGAG 1 cut(s) 623
Bpu10I CCTNAGC 2 cut(s) 363, 972
BpuEI CTTGAG 3 cut(s) 1064, 1127, 1304
BpuMI CCSGG 4 cut(s) 152, 308, 461, 1222
BsaBI GATNNNNATC 2 cut(s) 326, 1005
BsaI GGTCTC 1 cut(s) 141
BsaJI CCNNGG 5 cut(s) 104, 136, 292, 486, 1105
BsaWI WCCGGW 1 cut(s) 381
BsaXI ACNNNNNCTCC 4 cut(s) 866, 896, 897, 927
Bsc4I CCNNNNNNNGG 3 cut(s) 973, 1188, 1221
Bse118I RCCGGY 1 cut(s) 350
Bse1I ACTGG 4 cut(s) 192, 794, 1158, 1202
Bse3DI GCAATG 1 cut(s) 651
Bse8I GATNNNNATC 2 cut(s) 326, 1005
BseBI CCWGG 3 cut(s) 144, 928, 1189
BseDI CCNNGG 5 cut(s) 104, 136, 292, 486, 1105
BseGI GGATG 2 cut(s) 524, 936
BseJI GATNNNNATC 2 cut(s) 326, 1005
BseLI CCNNNNNNNGG 3 cut(s) 973, 1188, 1221
BseMI GCAATG 1 cut(s) 651
BseMII CTCAG 3 cut(s) 354, 798, 963
BseNI ACTGG 4 cut(s) 192, 794, 1158, 1202
BseRI GAGGAG 3 cut(s) 599, 620, 989
BseSI GKGCMC 2 cut(s) 412, 776
BseXI GCAGC 3 cut(s) 439, 535, 1189
BsgI GTGCAG 1 cut(s) 916
Bsh1236I CGCG 1 cut(s) 117
BshFI GGCC 6 cut(s) 135, 590, 682, 1067, 1214, 1336
BsiHKAI GWGCWC 1 cut(s) 776
BsiSI CCGG 7 cut(s) 152, 164, 308, 351, 382, 461, 1222
BslFI GGGAC 2 cut(s) 269, 949
BslI CCNNNNNNNGG 3 cut(s) 973, 1188, 1221
BsmAI GTCTC 1 cut(s) 141
BsmFI GGGAC 2 cut(s) 269, 949
BsmI GAATGC 2 cut(s) 535, 1179
BsnI GGCC 6 cut(s) 135, 590, 682, 1067, 1214, 1336
Bso31I GGTCTC 1 cut(s) 141
Bsp1286I GDGCHC 4 cut(s) 412, 448, 776, 910
Bsp143I GATC 6 cut(s) 42, 321, 435, 978, 1000, 1044
BspACI CCGC 1 cut(s) 115
BspANI GGCC 6 cut(s) 135, 590, 682, 1067, 1214, 1336
BspCNI CTCAG 3 cut(s) 355, 799, 964
BspFNI CGCG 1 cut(s) 117
BspLI GGNNCC 2 cut(s) 465, 907
BspMAI CTGCAG 1 cut(s) 457
BspMI ACCTGC 1 cut(s) 557
BspPI GGATC 1 cut(s) 1008
BspTNI GGTCTC 1 cut(s) 141
BsrDI GCAATG 1 cut(s) 651
BsrFI RCCGGY 1 cut(s) 350
BsrI ACTGG 4 cut(s) 192, 794, 1158, 1202
BssAI RCCGGY 1 cut(s) 350
BssECI CCNNGG 5 cut(s) 104, 136, 292, 486, 1105
BssMI GATC 6 cut(s) 42, 321, 435, 978, 1000, 1044
BssT1I CCWWGG 4 cut(s) 104, 136, 486, 1105
Bst2UI CCWGG 3 cut(s) 144, 928, 1189
Bst4CI ACNGT 3 cut(s) 296, 922, 1351
BstC8I GCNNGC 5 cut(s) 7, 352, 535, 1055, 1074
BstDEI CTNAG 3 cut(s) 363, 807, 972
BstDSI CCRYGG 1 cut(s) 292
BstF5I GGATG 2 cut(s) 524, 936
BstFNI CGCG 1 cut(s) 117
BstHHI GCGC 1 cut(s) 1095
BstKTI GATC 6 cut(s) 45, 324, 438, 981, 1003, 1047
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 6 cut(s) 42, 321, 435, 978, 1000, 1044
BstMWI GCNNNNNNNGC 5 cut(s) 416, 452, 650, 940, 1073
BstNI CCWGG 3 cut(s) 144, 928, 1189
BstNSI RCATGY 4 cut(s) 943, 1076, 1099, 1375
BstSCI CCNGG 7 cut(s) 142, 150, 306, 459, 926, 1187, 1220
BstSFI CTRYAG 1 cut(s) 453
BstSLI GKGCMC 2 cut(s) 412, 776
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 3 cut(s) 439, 535, 1189
BstX2I RGATCY 1 cut(s) 1044
BstXI CCANNNNNNTGG 1 cut(s) 871
BstYI RGATCY 1 cut(s) 1044
BsuRI GGCC 6 cut(s) 135, 590, 682, 1067, 1214, 1336
BtgI CCRYGG 1 cut(s) 292
BtsCI GGATG 2 cut(s) 524, 936
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 3 cut(s) 199, 543, 918
BveI ACCTGC 1 cut(s) 557
Cac8I GCNNGC 5 cut(s) 7, 352, 535, 1055, 1074
CaiI CAGNNNCTG 1 cut(s) 601
CfoI GCGC 1 cut(s) 1095
Cfr10I RCCGGY 1 cut(s) 350
Cfr13I GGNCC 4 cut(s) 140, 463, 680, 1334
Csp6I GTAC 4 cut(s) 250, 379, 799, 1147
CviAII CATG 8 cut(s) 99, 374, 476, 940, 1058, 1073, 1096, 1372
CviQI GTAC 4 cut(s) 250, 379, 799, 1147
DdeI CTNAG 3 cut(s) 363, 807, 972
DpnI GATC 6 cut(s) 44, 323, 437, 980, 1002, 1046
DpnII GATC 6 cut(s) 42, 321, 435, 978, 1000, 1044
DraIII CACNNNGTG 1 cut(s) 894
Eco130I CCWWGG 4 cut(s) 104, 136, 486, 1105
Eco147I AGGCCT 1 cut(s) 1214
Eco24I GRGCYC 2 cut(s) 448, 910
Eco31I GGTCTC 1 cut(s) 141
Eco47I GGWCC 2 cut(s) 140, 463
Eco57I CTGAAG 2 cut(s) 420, 1035
EcoO109I RGGNCCY 2 cut(s) 680, 1334
EcoRII CCWGG 3 cut(s) 142, 926, 1187
EcoT14I CCWWGG 4 cut(s) 104, 136, 486, 1105
EcoT38I GRGCYC 2 cut(s) 448, 910
ErhI CCWWGG 4 cut(s) 104, 136, 486, 1105
FaeI CATG 8 cut(s) 102, 377, 479, 943, 1061, 1076, 1099, 1375
FaqI GGGAC 2 cut(s) 269, 949
FatI CATG 8 cut(s) 98, 373, 475, 939, 1057, 1072, 1095, 1371
FbaI TGATCA 1 cut(s) 435
Fnu4HI GCNGC 3 cut(s) 453, 524, 1178
FokI GGATG 2 cut(s) 531, 943
FriOI GRGCYC 2 cut(s) 448, 910
Fsp4HI GCNGC 3 cut(s) 453, 524, 1178
FspBI CTAG 2 cut(s) 618, 1032
FspI TGCGCA 1 cut(s) 1094
GlaI GCGC 1 cut(s) 1094
GluI GCNGC 3 cut(s) 453, 524, 1178
GsuI CTGGAG 1 cut(s) 623
HaeIII GGCC 6 cut(s) 135, 590, 682, 1067, 1214, 1336
HapII CCGG 7 cut(s) 152, 164, 308, 351, 382, 461, 1222
HhaI GCGC 1 cut(s) 1095
Hin1II CATG 8 cut(s) 102, 377, 479, 943, 1061, 1076, 1099, 1375
Hin6I GCGC 1 cut(s) 1093
HinP1I GCGC 1 cut(s) 1093
HinfI GANTC 5 cut(s) 277, 395, 740, 957, 1024
HpaII CCGG 7 cut(s) 152, 164, 308, 351, 382, 461, 1222
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 3 cut(s) 126, 379, 774
Hpy188I TCNGA 5 cut(s) 400, 659, 736, 745, 808
Hpy188III TCNNGA 8 cut(s) 46, 208, 220, 572, 602, 982, 1021, 1042
Hpy8I GTNNAC 3 cut(s) 126, 379, 774
HpyAV CCTTC 7 cut(s) 105, 191, 395, 508, 1240, 1246, 1294
HpyCH4III ACNGT 3 cut(s) 296, 922, 1351
HpyCH4V TGCA 5 cut(s) 455, 566, 774, 897, 1177
HpyF10VI GCNNNNNNNGC 5 cut(s) 416, 452, 650, 940, 1073
HpyF3I CTNAG 3 cut(s) 363, 807, 972
Hsp92II CATG 8 cut(s) 102, 377, 479, 943, 1061, 1076, 1099, 1375
HspAI GCGC 1 cut(s) 1093
KroI GCCGGC 1 cut(s) 350
KroNI GCCGGC 1 cut(s) 352
Ksp22I TGATCA 1 cut(s) 435
Kzo9I GATC 6 cut(s) 42, 321, 435, 978, 1000, 1044
LmnI GCTCC 4 cut(s) 20, 874, 905, 1274
Lsp1109I GCAGC 3 cut(s) 439, 535, 1189
LweI GCATC 2 cut(s) 336, 921
MaeI CTAG 2 cut(s) 618, 1032
MaeIII GTNAC 4 cut(s) 238, 313, 922, 1021
MalI GATC 6 cut(s) 44, 323, 437, 980, 1002, 1046
MboI GATC 6 cut(s) 42, 321, 435, 978, 1000, 1044
MboII GAAGA 2 cut(s) 589, 1255
MflI RGATCY 1 cut(s) 1044
MhlI GDGCHC 4 cut(s) 412, 448, 776, 910
MluCI AATT 3 cut(s) 232, 469, 1359
MlyI GAGTC 2 cut(s) 749, 1018
MmeI TCCRAC 2 cut(s) 48, 372
MroNI GCCGGC 1 cut(s) 350
MseI TTAA 3 cut(s) 51, 675, 1344
MslI CAYNNNNRTG 2 cut(s) 548, 1032
MspI CCGG 7 cut(s) 152, 164, 308, 351, 382, 461, 1222
MspR9I CCNGG 7 cut(s) 144, 152, 308, 461, 928, 1189, 1222
Mva1269I GAATGC 2 cut(s) 535, 1179
MvaI CCWGG 3 cut(s) 144, 928, 1189
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 5 cut(s) 416, 452, 650, 940, 1073
NaeI GCCGGC 1 cut(s) 352
NciI CCSGG 4 cut(s) 152, 308, 461, 1222
NdeII GATC 6 cut(s) 42, 321, 435, 978, 1000, 1044
NgoMIV GCCGGC 1 cut(s) 350
NlaIII CATG 8 cut(s) 102, 377, 479, 943, 1061, 1076, 1099, 1375
NlaIV GGNNCC 2 cut(s) 465, 907
NmuCI GTSAC 3 cut(s) 313, 922, 1021
NsbI TGCGCA 1 cut(s) 1094
NspI RCATGY 4 cut(s) 943, 1076, 1099, 1375
OliI CACNNNNGTG 1 cut(s) 548
PaeI GCATGC 1 cut(s) 1076
PceI AGGCCT 1 cut(s) 1214
PctI GAATGC 2 cut(s) 535, 1179
PdiI GCCGGC 1 cut(s) 352
PfeI GAWTC 3 cut(s) 277, 395, 957
PflFI GACNNNGTC 1 cut(s) 74
PkrI GCNGC 3 cut(s) 454, 525, 1179
PleI GAGTC 2 cut(s) 748, 1018
PpsI GAGTC 2 cut(s) 748, 1018
Psp6I CCWGG 3 cut(s) 142, 926, 1187
PspGI CCWGG 3 cut(s) 142, 926, 1187
PspN4I GGNNCC 2 cut(s) 465, 907
PspPI GGNCC 4 cut(s) 140, 463, 680, 1334
PstI CTGCAG 1 cut(s) 457
PstNI CAGNNNCTG 1 cut(s) 601
PsuI RGATCY 1 cut(s) 1044
PsyI GACNNNGTC 1 cut(s) 74
RsaI GTAC 4 cut(s) 251, 380, 800, 1148
RsaNI GTAC 4 cut(s) 250, 379, 799, 1147
RseI CAYNNNNRTG 2 cut(s) 548, 1032
SaqAI TTAA 3 cut(s) 51, 675, 1344
SatI GCNGC 3 cut(s) 453, 524, 1178
Sau3AI GATC 6 cut(s) 42, 321, 435, 978, 1000, 1044
Sau96I GGNCC 4 cut(s) 140, 463, 680, 1334
ScaI AGTACT 1 cut(s) 1148
SchI GAGTC 2 cut(s) 749, 1018
ScrFI CCNGG 7 cut(s) 144, 152, 308, 461, 928, 1189, 1222
SduI GDGCHC 4 cut(s) 412, 448, 776, 910
SfaNI GCATC 2 cut(s) 336, 921
SfcI CTRYAG 1 cut(s) 453
SinI GGWCC 2 cut(s) 140, 463
SmiMI CAYNNNNRTG 2 cut(s) 548, 1032
SmlI CTYRAG 3 cut(s) 1079, 1142, 1319
SmoI CTYRAG 3 cut(s) 1079, 1142, 1319
SpeI ACTAGT 1 cut(s) 1031
SphI GCATGC 1 cut(s) 1076
Sse9I AATT 3 cut(s) 232, 469, 1359
SseBI AGGCCT 1 cut(s) 1214
SsiI CCGC 1 cut(s) 115
SspMI CTAG 2 cut(s) 618, 1032
StuI AGGCCT 1 cut(s) 1214
StyD4I CCNGG 7 cut(s) 142, 150, 306, 459, 926, 1187, 1220
StyI CCWWGG 4 cut(s) 104, 136, 486, 1105
TaaI ACNGT 3 cut(s) 296, 922, 1351
TaqI TCGA 6 cut(s) 228, 702, 794, 843, 885, 1041
TasI AATT 3 cut(s) 232, 469, 1359
TatI WGTACW 1 cut(s) 1146
TfiI GAWTC 3 cut(s) 277, 395, 957
Tru1I TTAA 3 cut(s) 51, 675, 1344
Tru9I TTAA 3 cut(s) 51, 675, 1344
TscAI CASTG 3 cut(s) 199, 550, 925
TseFI GTSAC 3 cut(s) 313, 922, 1021
TseI GCWGC 3 cut(s) 452, 523, 1177
Tsp45I GTSAC 3 cut(s) 313, 922, 1021
TspDTI ATGAA 3 cut(s) 87, 464, 626
TspRI CASTG 3 cut(s) 199, 550, 925
Tth111I GACNNNGTC 1 cut(s) 74
VneI GTGCAC 1 cut(s) 772
VpaK11BI GGWCC 2 cut(s) 140, 463
XapI RAATTY 1 cut(s) 1359
XceI RCATGY 4 cut(s) 943, 1076, 1099, 1375
XcmI CCANNNNNNNNNTGG 1 cut(s) 598
XspI CTAG 2 cut(s) 618, 1032
ZrmI AGTACT 1 cut(s) 1148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.